BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50260.1
Length=2334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914129 jgi|Araly1|914129|Al_scaffold_0001_4383 2843 0.0
Ahg479501 jgi|Araly1|479501|fgenesh2_kg.3__2202__AT3G19830.1 1626 0.0
> Ahg914129 jgi|Araly1|914129|Al_scaffold_0001_4383
Length=2031
Score = 2843 bits (1539), Expect = 0.0
Identities = 1887/2050 (92%), Gaps = 43/2050 (2%)
Strand=Plus/Plus
Query 48 ATGATTCCACAAACTTCTTCTTCGAA-TTTTGATTTCCGATTACCTGTTGATGTGTCTTG 106
|||||||| ||| |||||| ||| || |||||||||||| |||||||||||||||||| |
Sbjct 1 ATGATTCCGCAATCTTCTTTTTC-AAGTTTTGATTTCCGGTTACCTGTTGATGTGTCTCG 59
Query 107 -CACTCTGCTCTGTCCATGCTCTAATGAGCTCCGCGCGGttttttttACAAGGAGTCGGG 165
| |||||||||||||||||||| ||||||||||||||||| | | | ||||||||||||
Sbjct 60 TC-CTCTGCTCTGTCCATGCTCTTATGAGCTCCGCGCGGTTGTGTCTCCAAGGAGTCGGG 118
Query 166 TTCTGCGTCCGAGCGTCAAAATTTCGAACTTTAGGTTTA-TTTCCTGTGGATTTCGTGG- 223
|||| |||| || | ||||| ||| ||||||| || ||| ||||||| ||| |||||||
Sbjct 119 TTCTTCGTCGGAACTTCAAAGTTTTGAACTTTCGG-TTAGTTTCCTGCGGAGTTCGTGGC 177
Query 224 GAATTCGAAAAACCTAAGATTGACGGATTCTAGTAGAAAGGCTGCAAATAGGTTTGTAAT 283
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 178 G-ATTCGAAAAACCTAAGATTGACGGATTCTAGTAGAAAGGCTGCAAATAGGTTTCTTTT 236
Query 284 TGCTAGGTTTACGAATGAATTTGAAGACGAGGGTAGTTCGAAAGAG--TC-----CA--A 334
| |||||||| | |||||||| ||| ||||| | |||| ||||| || || |
Sbjct 237 TTCTAGGTTTTCAAATGAATTCAAAGTCGAGGAAACTTCGCAAGAGTCTCTGATTCATGA 296
Query 335 TGACCAAGCCAATT-TCAGTAACTTTAGGGAAGATCCGATAGTGGATAAGCTTAGGACCC 393
||||||| ||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 297 TGACCAAAACAATTAT-AGTAATTTTAGGGAAGATCCGATAGTGGATAAGCTTAGGACCC 355
Query 394 AGTTAGGTGTAATCCATCCACTTCCGTCACCGA-CCATTAATCGTAGTGTAATTAGTCTA 452
| || |||||||||||||||||||||||||| | || | ||||||| ||| ||| |||||
Sbjct 356 AATTGGGTGTAATCCATCCACTTCCGTCACC-ACCCCTAAATCGTACTGTGATTGGTCTA 414
Query 453 TTCGTCTTCTTCTTTTTCGTTGGTGTTGCTTTTGATAAGCTATGGACTTGGAGAAAGAGG 512
||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 415 TTCGTCTTCTTCTTTTTCGTTGGTGTTGCTTTTGATAAGCTATGGACGT-G-G--AGA-- 468
Query 513 CAAAGAGAAACAGGTGGAGATGGAAACCAACGAGGAGTAGGGCCATGGCCACAGGTTCCC 572
| |||| |||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 469 C------AAACGGGTGGAGATGGAGGGCAAAGAGGATTAGGGCCATGGCCACAGGTTCCC 522
Query 573 ACCAGCTTCTCTTTGTTCCTAGAGAAGGATTTGCAAAGGAAAGAGTCCGTGGAGTGGGTC 632
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 523 ACCAGCTTCTCTTTGTTCCTAGAGAAGGACTTGCAAAGGAAAGAGTCGGTGGAGTGGGTC 582
Query 633 AACATGGTGTTAGGGAAGCTCTGGAAAGTGTATAGAGC-GGGTATTGAGAATTGGCTCGT 691
||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 583 AACATGGTGTTGGGGAAGCTCTGGAAAGTGTATAGAGCTGGG-ATTGAGAATTGGCTCGT 641
Query 692 TGGTTTGTTACAGCCTGTGATTGATGACTTGAAAAAGCCTGATTATGTGCAGAGAGTTGA 751
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 642 TGGTTTGTTGCAGCCAGTGATTGATGACTTGAAGAAGCCTGATTATGTGCAGAGAGTTGA 701
Query 752 GATTAAGCAGTTTTCTTTAGGGGATGAGCCGTTGTCTGTCAGAAATGTTGAGAGGAAGAC 811
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 702 AATTAAGCAGTTTTCTTTAGGGGATGAGCCTTTGTCTGTCAGAAATGTTGAGAGGAGGAC 761
Query 812 ATCTCGCCGTGCCAATGACTTGCAGTACCAAATTGGCCTTCGGTATACTGGCGGTGCACG 871
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 762 ATCTCGCCGTGCCAATGACTTGCAGTACCAAATTGGCCTTAGGTATACTGGTGGTGCCCG 821
Query 872 CATGTTGTTAATGCTCTCTTTGAAATTCGGTGTTATCCCAATAGTTGTTCCAGTTGGTGT 931
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 822 CATGTTGTTAATGCTCTCTTTGAAATTCGGAATTATCCCAATCGTTGTTCCAGTTGGTGT 881
Query 932 CCGAGATTTTGACATTGATGGTGAGCTTTGGGTCAAACTAAGATTAATACCGACACAACC 991
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 882 CCGGGATTTCGACATTGATGGTGAGCTTTGGGTCAAACTAAGATTGATACCGACACAGCC 941
Query 992 TTGGGTGGGAGCTGTATCATGTTCGTTTGTATCACTTCCAAAGGTCACATTTCAACTTGC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 942 TTGGGTGGGAGCTGTATCATGTTCGTTTGTATCACTTCCAAAGGTCACATTTCAACTCGC 1001
Query 1052 AGCATTCAGATTGTTTAATCTAATGGGAATTCCCGTTCTATCAATGTTCTTGACCAAACT 1111
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AGCATTCATATTGTTTAACCTAATGGGAATTCCCGTTCTATCAATGTTCTTGACCAAACT 1061
Query 1112 GCTGACTGTGGATTTGCCTCGATTATTTGTCCGACCGAAGAAAATTGTCTTGGACTTTCA 1171
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1062 GCTGACGGAGGATTTGCCTCGATTATTTGTCCGACCAAAGAAAATTGTCTTGGATTTTCA 1121
Query 1172 GAAAGGAAAAGCTGTTGGACCTGTTTTAGAAGACCTGAAATCAGGAGAAATGCAGGAAGG 1231
||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1122 AAAAGGAAAAGCTGTTGGCCCTGTTTCAGAAGACCTGAAATCAGGGGAAATGCAGGAAGG 1181
Query 1232 CAATAAGGATTTTGTCGGGGAACTATCTGTTACTCTTGTTGACGCCCAGAAACTTCGATA 1291
|||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 1182 CAATAATGATTTTGTCGGGGAACTATCTGTTACTCTTGTAGACGCTCAGAATCTTCGTTA 1241
Query 1292 CATGTTTTTTGGTAAAACGGATCCATATGCAATTCTCAGATTAGGGGATCAAGTTATCCG 1351
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CATGTTCTCTGGTAAAACGGATCCATATGCAATTCTCAGATTAGGGGATCAAGTTATCCG 1301
Query 1352 TAGTAAAAGGAACAGTCAAACTACTGTCATTGGGGCTCCTGGTCAGCCAATTTGGAATCA 1411
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TGGTAAAAGGAACAGTCAAACTACTGTCATTGGGGCTCCTGGTCAGCCAATTTGGAATCA 1361
Query 1412 GGACTTTCAATTCCTTGTTTCAAATCCTAGAGAGCAAGTATTACAAATTGAGGTCAATGA 1471
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1362 GGACTTTCAATTCCTTGTTTCAAATCCTAGAGAGCAAATACTACAAATTGAGGTCAATGA 1421
Query 1472 TCGTCTTGGGTTTGCTGATATGGCTATTGGTACTGGAGAGGTTGATCTCAGATTTCTGCA 1531
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1422 TCGTCTTGGGTTTGCTGATATGGCTATTGGTACTGGAGAGGTTGATATCAGATTTCTGCA 1481
Query 1532 AGATACGGTTCCTACAGACAGAATTGTGGTTTTGCGTGGTGGTTGGAGTTTGTTTGGAAA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AGATACGGTTCCTACAGACAGAATTGTGGTTTTGCGTGGTGGTTGGAGTTTGTTTGGAAA 1541
Query 1592 GGGATCTGCGGGTGAGATACTGCTACGGCTTACATACAAATCATATGTGGAGGAGGAAGA 1651
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1542 GGGATCTGCGGGTGAGATACTGCTACGGCTTACATACAAAGCATATGTGGAGGAGGAAGA 1601
Query 1652 AGATGACAAGACCAATGTCAAAGCCATTGAT--A----CTTCTGACGATGAAATGTCTGA 1705
||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 1602 AGATGACAAGACCAATGTCAAAGCCATTGATGCAGATGCTTCTGATGATGAAATGTCTGA 1661
Query 1706 TTCAGAAGAACTTGGCTCATTTGTGCGGAAGGGAAAGCTTTCGTCAGATGATATTGATCA 1765
|||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||| |||
Sbjct 1662 TTCAGAAGGACTTGGCTCATTTGTGCGGAATGAAAAGGTTTCTTCAGATGATATTGGTCA 1721
Query 1766 AGAGTCATTTATGAACGTGTTGTCTGCATTGATTGTGAGTGAGGAGTTTCAAGGCATAGT 1825
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1722 AGAGTCATTTATGAACGTGTTGTCTGCTTTGATTGTGAGTGAGGAGTTTCAAGGCATAGT 1781
Query 1826 TTCATCTGAAGCTAGAGACGGTATAATTGATGGTGGTGACTCACTTGGGGCACCAGTACC 1885
|||||||||||| ||||| ||| |||| |||||||||||| |||||||| ||||||||
Sbjct 1782 TTCATCTGAAGCCGGAGACAGTAAAATTTCTGGTGGTGACTCGCTTGGGGCTCCAGTACC 1841
Query 1886 TTCTAAGCCAGATACTAGTAAGGGGTCTGAAAGAAACGCAGATGTATCAAATTTGGATTT 1945
||||||| |||||| |||||| ||||||||||| ||| ||||||||||| ||| ||||||
Sbjct 1842 TTCTAAGGCAGATAGTAGTAATGGGTCTGAAAGCAACACAGATGTATCAGATTCGGATTT 1901
Query 1946 GTTAGTTGCAAATTCTGGTAGAGG-AGCTGGCGGTGATGGAGGATTAGCATTACTGTGGT 2004
||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1902 GTTAGTTAAAAATTCTGGTAGAGGGA-CTGGCGGTGATGGAGGGTTAGCATTACTGTGGT 1960
Query 2005 TCGGTATTATCACGGGTATATTGGTTCTTGTTGCTATCAACATGGAAGGCTCAAGTTTCT 2064
||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1961 TCGGTATAATCACGGGTATATTGGTTCTTGTTGCTATCAACATGGAAGGCACACGTTTCT 2020
Query 2065 TCAACCCGTA 2074
||||||||||
Sbjct 2021 TCAACCCGTA 2030
> Ahg479501 jgi|Araly1|479501|fgenesh2_kg.3__2202__AT3G19830.1
Length=2322
Score = 1626 bits (880), Expect = 0.0
Identities = 1556/1875 (83%), Gaps = 76/1875 (4%)
Strand=Plus/Plus
Query 347 TTTCAGTAACTTTAGGGAAGATCCGATAGTGGATAAGCTTAGGACCCAGTTAGGTGTAAT 406
||||| ||||||||| ||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 324 TTTCACTAACTTTAGAGAAGATCCGATTGTGGATAAGCTCAGGACTCACCTAGGTGTAAT 383
Query 407 CCATCCACTTCCGTCACCGACC-ATTAATCGTAGTGTAATTAGTCTATTCGTCTTCTTCT 465
||||||| | || || || ||| |||| ||||| || ||| || |||||| ||||||||
Sbjct 384 CCATCCAATCCCCTCGCC-ACCAATTAGTCGTAATGCGATTGGTTTATTCGCCTTCTTCT 442
Query 466 T-TTTCGTTGGTGTTGCTTT-TGATAAGCTATGGACTTGGAGAAAGAGGCAAAGAGAAAC 523
| ||| ||||||||| ||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct 443 TCTTT-GTTGGTGTT-ATTTGTGACAAGCTATGGACTTGGAGAAAGAGGCGGAGACAAAC 500
Query 524 AG-GT-G-GA-GATGGAAACCAACGAGGAGTAGGGCCATGGCCACAGGTTCCCACCAGCT 579
| || | || || ||| ||||||||||| ||||||||| |||| |||||||||||||
Sbjct 501 -GAGTGGTGATGAGGGAGGCCAACGAGGAGCCGGGCCATGGGCACAAGTTCCCACCAGCT 559
Query 580 TCTCTTTGTTCCTAGAGAAGGATTTGCAAAGGAAAGAGTCCGTGGAGTGGGTCAACATGG 639
|||| ||| ||| |||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 560 TCTCGCTGTCCCTTGAGAAGGACTTGCAAAGGAAAGAGTCAGTGGAGTGGGTGAACATGG 619
Query 640 TGTTAGG-GAAGCTCTGGAAAGTGTATAGA-GCGGGTATTGAGAATTGGCTCGTTGGTTT 697
|||| || |||||||||||||| |||||| | ||| |||||||||||||| ||||| ||
Sbjct 620 TGTT-GGTTAAGCTCTGGAAAGTTTATAGAGGTGGG-ATTGAGAATTGGCTTGTTGGATT 677
Query 698 GTTACAGCCTGTGATTGATGACTTGAAAAAGCCTGATTATGTGCAGAGAGTTGAGATTAA 757
||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 678 GTTGCAGCCTGTCATTGATGACTTGAAGAAGCCAGATTATGTGCAGAGAGTTGAAATTAA 737
Query 758 GCAGTTTTCT-TTAGGGGATGAGCCGTTGTCTGTCAGAAATGTTGAGAGGAAGACATCTC 816
||| || ||| || || |||||||| |||||||| |||||||||||||||| ||||||||
Sbjct 738 GCAATTCTCTCTT-GGAGATGAGCCTTTGTCTGTTAGAAATGTTGAGAGGAGGACATCTC 796
Query 817 GCCGTGCCAATGACTTGCAGTACCAAATTGGCCTTCGGTATACTGGCGGTGCACGCATGT 876
|||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || ||||
Sbjct 797 GCCGTGTTAATGACTTGCAGTACCAGATTGGTCTTCGGTATACTGGTGGTGCTCGGATGT 856
Query 877 TGTTAATGCTCTCTTTGAAATTCGGTGTTATCCCAATAGTTGTTCCAGTTGGTGTCCGAG 936
|||||||||||||||| ||||| ||| | |||||| |||| || ||||| ||| | || |
Sbjct 857 TGTTAATGCTCTCTTTAAAATTTGGTATCATCCCAGTAGTCGTGCCAGTAGGTATTCGGG 916
Query 937 ATTTTGACATTGATGGTGAGCTTTGGGTCAAACTAAGATTAATACCGACA-CAACCTTGG 995
||||||||||||| |||||||| ||||| ||| ||||||| || ||| || | ||||||
Sbjct 917 ATTTTGACATTGACGGTGAGCTATGGGTTAAATTAAGATTGATTCCGTCAGC-GCCTTGG 975
Query 996 GTGGGAGCTGTATCATGTTCGTTTGTATCACTTCCAAAGGTCACATTTCAACTTGCAGCA 1055
|| ||||| | |||||| |||||||||||||||||||| ||| |||| | ||||| ||
Sbjct 976 GTTGGAGCAGCATCATGGGCGTTTGTATCACTTCCAAAGATCAAATTTGAGCTTGCTCCA 1035
Query 1056 TTCAGATTGTTTAATCTAATGGGAATTCCCGT-TCTATCAATGTTCTTGACCAAACTGCT 1114
||| ||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1036 TTCCGATTGTTTAATCTAATGGGAATTCCTGTGT-TATCAATGTTCTTGACCAAACTGCT 1094
Query 1115 GACTGTGGATTTGCCTCGATTATTTGTCCGACCGAAGAAAATTGTCTTGGACTTT-CAGA 1173
||| | ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||
Sbjct 1095 GACAGAAGATTTGCCTCGATTATTTGTCCGCCCCAAGAAAATTGTCTTGGA-TTTCCAGA 1153
Query 1174 AAGGAAAAGCTGTTGGACCTGTTTTAGAAGACCTGAAATCAGGAGAAATGCAGGAAGGCA 1233
|||||||||||||||| ||||||| ||||||| | ||||| ||||||||||||||||| |
Sbjct 1154 AAGGAAAAGCTGTTGGGCCTGTTTCAGAAGACTTAAAATCTGGAGAAATGCAGGAAGGGA 1213
Query 1234 ATAAGGATTTTGTCGGGGAACTATCTGTTACTCTTGTTGACGCCCAGAAACTTCGATACA 1293
| ||||||||||| ||||| || |||||||||||||| | ||||||||||||| |||||
Sbjct 1214 ACAAGGATTTTGTAGGGGAGCTGTCTGTTACTCTTGTAAATGCCCAGAAACTTCCATACA 1273
Query 1294 TGTTTTTTGGTAAAACGGATCCATATGCAATTCTCA-GATTAGGGGATCAAGTTATCCGT 1352
|||| | ||||| |||||||||||||| ||| | | || |||| ||||||||||||||
Sbjct 1274 TGTTCTCTGGTAGAACGGATCCATATGTTATT-TTACGAATAGGTGATCAAGTTATCCGC 1332
Query 1353 AGTAA-AAGGAACAGTCAAACTACTGTCATTGGGGCTCCTGGTCAGCCAATTTGGAATCA 1411
||||| || |||||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1333 AGTAAGAA-GAACAGTCAAACTACTGTGTTTGGTGCTCCTGGTCAGCCAATCTGGAATCA 1391
Query 1412 GGACTTTCAATTCCTTGTTTCAAATCCTAGAGAGCAAGTATTACAAATTGAGGTCAATGA 1471
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1392 GGACTTCCAATTCCTTGTTTCAAATCCTAGAGAGCAAGTATTACAAATTGAAGTCAACGA 1451
Query 1472 -TCGTCTTGGGTTTGCTGATATGGCTATTGGTA-CTGGAGAGGTTGATCTCAGATTT-CT 1528
| ||||||| ||||| |||||||||||||||| | ||||||||||| ||| || | ||
Sbjct 1452 CT-GTCTTGGATTTGCCGATATGGCTATTGGTATC-GGAGAGGTTGACCTC-GAATCACT 1508
Query 1529 GCAAGATACGGTTCCTACAGACAGAATT-GTG-GTTTTGCGTGGTGGTTGGAGTTTGTTT 1586
|| |||||||||||||||||||||| || || |||| ||| || ||||||||||||||
Sbjct 1509 GCCAGATACGGTTCCTACAGACAGA-TTCGTTAGTTT-GCGAGGCGGTTGGAGTTTGTTC 1566
Query 1587 GGAAAGGGATCTGCGGGTGAGATACTGCTACGGCTTACATACAAATCATATGTGGAGGAG 1646
|||||||||||| | || || ||||| || ||||||||||||||| |||| ||||||||
Sbjct 1567 GGAAAGGGATCTACTGGAGAAATACTACTCCGGCTTACATACAAAGCATACGTGGAGGAT 1626
Query 1647 GAAGAAGATGACAAGAC-CAATGTCAAA-GCCATTGAT--A----CTTCTGACGATGAAA 1698
||||||||||| || || ||| | |||| |||||| || | |||| || ||||||
Sbjct 1627 GAAGAAGATGATAA-ACGCAACG-CAAAAGCCATTTATGCAGATGCTTCCGATGATGAAT 1684
Query 1699 TGTCTGATTCAGAAGAACTTGGCTCATTTGTGCGGAAGGGA-AAGCTTTCGTCAGATGAT 1757
|||||||||| ||||||| | |||||||||||| ||| | | ||| | | || ||||||
Sbjct 1685 TGTCTGATTCTGAAGAACGTAGCTCATTTGTGCAGAATG-ACAAGATCCCTTCTGATGAT 1743
Query 1758 ATTGATCAAGAGTCATTTATGAACGTGTTGTCTGCATTGATTGTGAGTGAGGAGTTTCAA 1817
|||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1744 ATTGGTCAAGAGTCATTTATGAACGTGTTGTCTGCATTGATTTTGAGCGAGGAATTTCAA 1803
Query 1818 GGCATAGTTTCATCTGAAGCTAGAGA-CGGTATAA-TTGATGGTGGTGACTCACTTGGGG 1875
|||||||||||||| |||||| | || | ||| || |||||| |||||| ||| | |
Sbjct 1804 GGCATAGTTTCATCAGAAGCTGG-GAACAGTA-AAGTTGATGATGGTGAATCAAGCGTGT 1861
Query 1876 CACCAGTACCTTCTAAGCCAGATACTAG--T-AAGGGGTCTGAA--AGAA-ACGCAG--A 1927
|||| || ||||| ||| | | | || | || ||| || | || | || | |
Sbjct 1862 CACCTGTTCCTTCAAAGGCTGGGGC-AGACTCAAAA--TCTCAACCAAAAGATGCTGGCA 1918
Query 1928 -TG------TATCAAATTTGGATTTGTTAGTTGCAAATTCTGGTAGAGGAGCTGGCGGTG 1980
|| ||||| ||||||| || | ||| ||||||| |||||| || | ||
Sbjct 1919 ATGGGGACATATCAGATTTGGAAATGAAAAATGCGAATTCTGATAGAGGTTCTATTGATG 1978
Query 1981 ATGGAGGATTAGCATTACTGTGGTTCGGTATTATCACGGGTATATTGGTTCTTGTTGCTA 2040
||||||||||||||||| ||||||||||| | ||||| | || ||| || |||||||
Sbjct 1979 ATGGAGGATTAGCATTATTGTGGTTCGGTGTAATCACTTCTGTACTGGCGCTCGTTGCTA 2038
Query 2041 TCAACATGGAAGGCTCAAGTTTCTTCAACCCGTAGTATAGTACTATACATCTCGCTGGAG 2100
||||||||| ||||||||||||||||||||||| || || | || | | || |
Sbjct 2039 TCAACATGGGCGGCTCAAGTTTCTTCAACCCGTAACATGGTGTTGTATGGATAGTTGC-G 2097
Query 2101 ATTTCTGTTGC-A-AG-TCTGGTGGTCATCTCTTCTCAACCTTAGATATGGCTTATAACG 2157
|||||| |||| | || | || | | ||||||||| || ||| ||||||||| |||
Sbjct 2098 ATTTCTTTTGCCACAGGT-TGTTAATTTTCTCTTCTCGGCCACAGAGATGGCTTATTACG 2156
Query 2158 AGGTCTCAGTTTTGT 2172
|||||||||||||||
Sbjct 2157 AGGTCTCAGTTTTGT 2171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87912285460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5