BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50270.1
Length=2225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914136 jgi|Araly1|914136|Al_scaffold_0001_4390 2571 0.0
Ahg923472 jgi|Araly1|923472|scaffold_104753.1 579 4e-164
> Ahg914136 jgi|Araly1|914136|Al_scaffold_0001_4390
Length=1791
Score = 2571 bits (1392), Expect = 0.0
Identities = 1660/1790 (93%), Gaps = 15/1790 (1%)
Strand=Plus/Plus
Query 26 AGCTCAAAACATTGCTTGATCTTCCATTACACTTTCTTCATCTCAAGCAGATCCATTGCT 85
|||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 11 AGCTCAAAGCCTTGCTCGATCTTCCATTACTGTTTCTTCATCTCAAGCAGATCCATTGCT 70
Query 86 TACTCCTAACTTCTCCGATATTCTATACTCGTCGCGATCTCTTTCTCTCACGTCTTCTCC 145
|| |||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 71 TAGTCCTCACTTCTCCGATCTTCTACACTCGCCGCGATCTCTTTCTCTCCCGTCTTCTCC 130
Query 146 GTCGCTGCTGCACCGCCGCAACTCAATTCCGCTACGCTCGTCGTTTATTATGTCAACTCC 205
|| | ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 131 GT--C-GCTGCACCGCCGCTACTCAATTCCGGTACGCTCGTCGTTTATTATGTCAAATCC 187
Query 206 AAACTCTGAGCATTCAACTATGGGATTCGCTCATTGGTCACTTCTCCGG-CGGGATTACT 264
|||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 188 AAACTCCCAGCATTCAACTATGGGATTCGCTCGTTGGTCACTTCTCCGGTCGGG-TTACT 246
Query 265 CTCAACCGTCGGTTATCATTTCTTGCTTATCGTCATATGCGGCGAAACGGCGTCATCCCT 324
||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||
Sbjct 247 CTCAACCGTCGGTTATCGTTTCTTTCTTATCGTCAAATGCGGCGAAACGGCGTCGTCCCT 306
Query 325 AGCCGCCACACGTTTCCTCCGCTTCTCAAAGCGGTTTTCAAACTGAGAGACTCGAACCCG 384
||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||
Sbjct 307 AGCCGCCACACGTTTCCTCCGCTTCTCAAGGCGGTTTTCAAACTGAGAGACGCTAATCCG 366
Query 385 TTTCAGTTTCATGCTCATATCGTT-AAATTCGGGTTGGATTCGGATCCTTTTGTCAGGAA 443
||||||||||||||||||||| || ||||||||||| |||||||||| |||||| |||||
Sbjct 367 TTTCAGTTTCATGCTCATATC-TTGAAATTCGGGTTCGATTCGGATCTTTTTGTGAGGAA 425
Query 444 TTCGTTGATTTCGGGTTATTCTAGTTCTGGGTTATTCGATTTTGCAAGTCGTCTTTTTGA 503
||||||||||||||||||||||| || |||||||||||| |||| ||| ||| |||||||
Sbjct 426 TTCGTTGATTTCGGGTTATTCTAATTGTGGGTTATTCGAATTTGGAAGCCGTGTTTTTGA 485
Query 504 TGGAGCTGAAGATAAGGACGTGGTTACTTGGACTGCAATGATTGATGGGTTTGTGAGAAA 563
|||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 486 TGGAACTGAAGATAAGGACGTGGTTTCTTGGACTGCGATGATTGATGGGTTTGTGAGAAA 545
Query 564 TGGTTCTGCTTCGGAAGCAATGGTGTATTTCGTGGAGATGAAGAAGACTGGAGTCGCGGC 623
| |||| ||| |||||||||| ||| |||||||||||||||| | |||||||||||||
Sbjct 546 CGATTCTTCTTTGGAAGCAATGACGTACTTCGTGGAGATGAAGAGGTCTGGAGTCGCGGC 605
Query 624 TAACGAAATGACCGTTGTTAGCGTCTTGAAAGCTGCAGGGAAGGTTGAAGATGTTCGATT 683
|||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||
Sbjct 606 TAACGAAATGACTGTTGTTAGCGTCCTGAAAGCTACACGGAAGGCTGAAGATGTTCGATT 665
Query 684 TGGGAGAAGCGTTCATGGGCTTTACTTAGAAACAGGGAGAGTGAAATGCGATGTGTTCAT 743
|||||||||| |||||||| ||||||||||| |||| ||||||| || |||||||||||
Sbjct 666 TGGGAGAAGCATTCATGGGTTTTACTTAGAAGCAGGAAGAGTGAGGTGTGATGTGTTCAT 725
Query 744 AGGAAGTTCTCTAGTAGATATGTATGGGAAATGTAGTTGTTATGATGATGCCCAGAAAGT 803
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 726 AGGAAGTTCTCTAGTAGATATGTATGGGAAATGTGGTTGTTATGATGATGCCCAGAAAGT 785
Query 804 GTTCGATGAAATGCCTAGCAGAAACGTGGTTACTTGGACGGCGTTGATTGCTGGATATGT 863
|||||| |||||||||||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 786 GTTCGACGAAATGCCTAGCAGAAACGTAGTTACTTGGACCGCATTGATTGCTGGATACGT 845
Query 864 GCAAAGCCGTTGCTTCGATAAAGGGATGTTGGTTTTCGAGGAGATGTTAAAGAGTGATGT 923
|||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 846 GCAAGGCCGTTGCTTCGAGAAAGGGATGTTTGTTTTCGAAGAGATGTTAAAGAGTGATGT 905
Query 924 TGCGCCTAATGAGAAGACTCTAAGCAGTGTTCTTTCGGCGTGCGCTCATGTCGGGGCACT 983
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 906 TGCACCTAATGAGAAGACTCTAAGCAGTGTTCTTTCGGCATGCGCTCACGTAGGGGCACT 965
Query 984 TCACCGAGGAAGAAGGGTGCATTGTTATATGATTAAGAATTCGATTGAGATAAACACTAC 1043
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 966 TCACCGAGGAAGAAGGGTGCATTGTTATGTGATTAAGAATTCGATTGAGATAAACACTAC 1025
Query 1044 AGCT-GGAACTACATTGATTGATCTTTATGTCAAGTGCGGGTGTTTAGAGGAAGCTATAC 1102
|| | ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1026 AG-TGGGAACAACATTGATTGATTTTTATGCCAAGTGCGGGTGTTTAGAGGAAGCTATA- 1083
Query 1103 TT-GTTTTTGAGAGACTTCATGAGAAAAATGTGTATACTTGGACCGCGATGATTAATGGA 1161
|| ||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 1084 TTGGTTTTCGAGAGACTTCGTGAAAAAAATGTGTATACTTGGACAGCGATGATTAATGGA 1143
Query 1162 TTTGCAGCACACGGATATGCTAGAGATGCAT-TTGATCTCTTTTATACCATGTTGAGTAG 1220
|||||||| || |||||||| | || || | ||||||||||| ||||||||||||||||
Sbjct 1144 TTTGCAGCGCATGGATATGCAATAGGCGC-TGTTGATCTCTTTCATACCATGTTGAGTAG 1202
Query 1221 TCATGTTTCACCAAATGAAGTTACTTTCATGGCTGTCTTAAGTGCCTGCGCTCATGGAGG 1280
|||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct 1203 TCATGTTTCACCAAATGAAGTTACTTTCATCGTTGTCTTAAGCGCCTGCGCTCATGGAGG 1262
Query 1281 TCTTGTGGAAGAGGGTCGAAGGCTTTTCCTGAGCATGAAGGGACGTTTCAATATGGAGCC 1340
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1263 CCTTGTGGAAGAGGGTCGAAGGCTTTTCCTAAGCATGAAGGAACGTTTCAATTTGGAGCC 1322
Query 1341 AAAAGCGGATCACTATGCGTGTATGGTTGATTTATTTGGAAGAAAAGGTTTGCTAGAAGA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 AAAAGCGGATCACTATGCGTGTATGGTTGATTTATTTGGAAGAAAAGGTTTGCTAGAAGA 1382
Query 1401 GGCGAAAGCTTTGATAGAAAGAATGCCAATGGAGCCAACAAATGTGGTATGGGGAGCTCT 1460
||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1383 GGCAAAAGCTTTGATAGAGAGAATGCCAATGGAGCCAACAAATGCGGTATGGGGAGCTCT 1442
Query 1461 GTTCGGCTCTTGTTTGTTACACAAAGACTATGAGTTAGGTAAATACGCAGCCTCCCGTGT 1520
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GTTCGGGTCTTGTTTGATACACAAAGACTATGAGTTAGGTAAATACGCAGCCTCCCGTGT 1502
Query 1521 GATCAAGCTGCAACCTAGTCATAGTGGGAGATACACTCTCTTGGCTAATTTGTACTCGGA 1580
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1503 GATCAAGCTGCAACCTAGTCACAGCGGGAGATACACACTCTTGGCTAATTTGTACTCGGA 1562
Query 1581 ATCCCAAAACTGGGATGAAGTCGCTCGGGTAAGAAAGCAAATGAAAGATCAACAGGTGGT 1640
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 ATCCCAAAACTGGGATGATGTCGCTCGGGTAAGAAAGCAAATGAAAGATCAACAGGTGGT 1622
Query 1641 GAAATCGCCAGGATTTAGTTGGATCGAAGTGAAAGGCAAGCTTTGTGAATTCATAGCTTT 1700
|||||| || |||| ||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 1623 GAAATCACCGGGATGTAGCTGGATCGAAGTGAAAGGTAAGCTTCATGAATTCATAGCTTT 1682
Query 1701 CGATGATAAGAAACCCCTTGAATCTGATGATTTGTACAAGACTCTCGACA-CTGTTGGGG 1759
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 1683 CGATGATAAGAAACCCCTTGAATCTGATGATTTGTACAAGACTCTCGACAAC-GTAGGGG 1741
Query 1760 TGCAAATGAGATTGCCAGATGAATTGGAAGATGTGACTGCTGAATCATGA 1809
|||||||||||||||||||||||||||||||| ||||| || |||| |||
Sbjct 1742 TGCAAATGAGATTGCCAGATGAATTGGAAGATTTGACTTCTCAATCTTGA 1791
> Ahg923472 jgi|Araly1|923472|scaffold_104753.1
Length=1612
Score = 579 bits (313), Expect = 4e-164
Identities = 345/360 (96%), Gaps = 4/360 (1%)
Strand=Plus/Minus
Query 1812 TGGGACGTTTACCATTTTCCTCATAAGCCTTCTCTGAAACTATCCATAAC-CTTCAAATT 1870
|||||| |||| |||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 1612 TGGGACCTTTAGCATTTTCCTCATAAGCCTTCTCTGAAACTATCCATAACAC-TCAAGTT 1554
Query 1871 ATATCCTCCTTTAGTCTTCAACCTCTCGGCTAATTTCTCTGTTATCTCGAGATGCAATA- 1929
|||||||||| || ||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 1553 ATATCCTCCTCTACTCTTCAACCTCTCGGCTAATTTCTCGGATATCTCAAGATGCAATAG 1494
Query 1930 CTACAGGCTTCTTCTTCTCTTCTGAATATCTACAAGAAAAACTCTTGTTTGCAACTTTAA 1989
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 C-ACAGGCTTCTTCTTCTCTTCTGAATATCTACAAGAAAAACTCTTGTTTGCAACTTTAA 1435
Query 1990 CATCTGAAGTTGTGTGTTCTTGATTCCCACATCTGGACTTGAGTGCTTCAATGGCGATTT 2049
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1434 CATCTGAAGTTGTGTGTTCTTGATTGTCACATCTGGACTTAAGTGCTTCAATGGCGATTT 1375
Query 2050 CTGGAGGGATCTTAGGGTTTCTGGCGAGCTGTTTGCACGTCTCCATTGTTAGTTTCTTGT 2109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CTGGAGGGATCTTAGGGTTTCTGGCGAGCTGTTTGCACGTCTCCATTGTTAGTTTCTTGT 1315
Query 2110 AGTTGAGACATCGACATATCTCTGTTCGATCTTGGGGTGTTAGATTCGGATGAGACTGTA 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGTTGAGACATCGACATATCTCTGTTCGATCTTGGGGTGTTAGATTCGGATGAGACTGTA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83760448755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5