BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50280.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923472 jgi|Araly1|923472|scaffold_104753.1 2446 0.0
Ahg914136 jgi|Araly1|914136|Al_scaffold_0001_4390 198 1e-49
> Ahg923472 jgi|Araly1|923472|scaffold_104753.1
Length=1612
Score = 2446 bits (1324), Expect = 0.0
Identities = 1530/1627 (94%), Gaps = 24/1627 (1%)
Strand=Plus/Plus
Query 84 CTTCCTAGTTGTTCTATGAAATGTCTCCTCTCAACGATCTTAAGATCAATCTCAATGGCC 143
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCATAGTTGTTCTATGAAATGTCTCCTCTCAACGATCTTAAGATCAATCTCAATGGCC 60
Query 144 AATACACATTCTTCCTCAATCAGAACGTGATTTCAAAGTACTCTGGAAGCTTGAGGAAGA 203
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 61 AATACACATTCTTCCTCAATCAGGACGTGATTTCAAAGTACTCTGGAAGTTTGAGGAAGA 120
Query 204 TGATTAAACAGAGCAAAAAGAAGAGAAACAAGAAAAAGAGAATCATCACTATCGAGATTA 263
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTAAACAGAGCAAAAGGAAGAGAAACAAGAAAAAGAGAATCATCACTATCGAGATTG 180
Query 264 ATGATTTTCCAGGAGGACCAGATGGGTTTGAGCTGGTTTCAAGGTTCTGTTACCACAACG 323
|||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 ATGATTTTCCTGGTGGACCAGATGGGTTTGAGCTGGTTTCAAGGTTCTGTTACAACAACG 240
Query 324 GAGAAATCTTAATCGACGTCTCAAACGTCTCGACTTTGTACTGCTGCTCTGTTTTTCTAG 383
||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAAATCTCAATCGATGTCTCAAATGTCTCGACTTTGTACTGCTGCTCTGTTTTTCTAG 300
Query 384 GCATGTCGGAGAAGTTCTGTTTCTCTAATCTCTTCCTTCAGACAGAGAAGTTTCTAGAAG 443
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CCATGTCGGAGAAGTTCTGTTTCTCTAATCTCTTCCTTCAGACCGAGAAGTTTCTAGAAG 360
Query 444 AAGTGTTCTATGGGTCTTGGAGCGACATCGTTTCGTGTCTCAAGAACTGCGAGCAAGTGT 503
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 AAGTGTTATATGGGTCTTGGAGCGACATCGTTTTGTGTCTCAAGAACTGCGAGCAAGTGT 420
Query 504 TCTTCCAAGCAGATTCGTATGGTCTTGTAGATAAACTCATTTTCGCAGCTTTGAACAAAA 563
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 421 TCTTCCAAGCAGATTCGTATGGTCTTGTAGATAAACTCATCTTCGCAGCTTTGACCAAAA 480
Query 564 TCTCTCAGAATTCAG--ACGAtttttcttcttcttcgctttcttccttcgcctcttctct 621
|||||| |||||||| || | ||||||||||||||||| |||||||||||||| |||||
Sbjct 481 TCTCTCGGAATTCAGAAAC-A-TTTTCTTCTTCTTCGCTCTCTTCCTTCGCCTCCTCTCT 538
Query 622 ttctCCTGAGATGGCCAAGAACACGTCAGAATCAGACGGTAGGTATATTTCGCGGTCTGT 681
||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||
Sbjct 539 TTCTCCTGAGATGGCCAAGAACACGCCGGAATCAGACAGTAGGTATATTTCACGGTCTGT 598
Query 682 TGCTTGCGGAAGAAGCAACGAGTGGTGGTTCGAAGATATGACAAATCTTTCCCCGAAG-A 740
| ||||||||||||||||||||||||||||||| |||||||||| ||||||| || || |
Sbjct 599 TTCTTGCGGAAGAAGCAACGAGTGGTGGTTCGACGATATGACAACTCTTTCCTCG-AGTA 657
Query 741 TCATATTGAAG-CTAGTTATGATCATTGGAGCTTACAAAACCAACATAAAAAGCTTAGTC 799
| || ||| || ||| | |||||||||||||||||||| || ||||||||||||||||||
Sbjct 658 TTATTTTG-AGACTAATCATGATCATTGGAGCTTACAAGACAAACATAAAAAGCTTAGTC 716
Query 800 CTAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAAGAACTACC 859
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAACCAGATTTCTTCTCCATTATCTCAAGACAAAACTCCAAACCAAATCAAGAACTACT 776
Query 860 ACTGAGCTTATGAGGAACAAGCTCGAGTACT-CAGATTTAGCTGACACAGCGGTTAGAGG 918
|| |||||||||||||||||||||||||||| || |||||||||||||||||| || |||
Sbjct 777 ACAGAGCTTATGAGGAACAAGCTCGAGTACTCCA-ATTTAGCTGACACAGCGGCTAAAGG 835
Query 919 AGTGATTTCCGCAGGG-ACA-CGTACGTTTTCTTGCAGGAAACTCTTCTGGATTCTTCGA 976
||||||||| |||||| | | || |||||||||||||||||||||| ||| ||||| |
Sbjct 836 AGTGATTTCTGCAGGGAAAACCG--CGTTTTCTTGCAGGAAACTCTTTTGGGTTCTTTGG 893
Query 977 GTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCAAGAATCGGTTTAGAAACCCTAATAGGA 1036
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 894 GTTTTATCCAGTTTTAGCCTAAGTAGAGAGTCGAGAATTGGTTTAGAAACCCTAATAGGA 953
Query 1037 GAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATATCTGCAAGAGGAAGCAGAGAA 1096
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 954 GAAATGCTGGAACAAGCAACACTTGATGATCTTCTGATACCTGCAGGAGGAAGCAAAGAG 1013
Query 1097 AGTGGTTTCTACAATGTTGATCTTGTGATAAGATTACTAAAAGTATTTGTgaagaacaga 1156
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 1014 AGCGGTTTCTACAATGTGGATCTTGTGATAAGATTACTAAAAGTGTTTGTGAAGAAC--A 1071
Query 1157 gaagaagaagaagaagaatcaagagagaggaatatgaaagaaATTGGGAAATTGATTGAT 1216
| |||||||| | || ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1072 G-AGAAGAAG-A-AA-TATCAAGAGAGAAGAACATGAAAGAAATTGGGAAATTGATTGAT 1127
Query 1217 AAGTATTTGAGAGAAATATCTCCAGATCAGAATTTGAAAGTCCCCAAGTTTCTTGGTGTT 1276
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1128 AAGTATTTGAGAGAGATATCTCCAGATCAGAATTTGAAAGTCTCCAAGTTTCTTGGTGTT 1187
Query 1277 GCAGAGAGCTTGCCGGATTCAGCTAGAGATTGCTTTGATGGAGTTTACAGAGCAATTGAC 1336
|||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1188 GCAGAGAGTTTGCCAGATTCAGCTAGAGATTGCTTTGATGGAGTTTACAGAGGAATTGAC 1247
Query 1337 ATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 ATCTATCTACAGTCTCATCCGAATCTAACACCCCAAGATCGAACAGAGATATGTCGATGT 1307
Query 1397 CTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATC 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CTCAACTACAAGAAACTAACAATGGAGACGTGCAAACAGCTCGCCAGAAACCCTAAGATC 1367
Query 1457 CCTCCAGAAATCGCCATTGAAGCACTCAAGTCCAGATGTGGGAATCAAGAACACACAACT 1516
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1368 CCTCCAGAAATCGCCATTGAAGCACTTAAGTCCAGATGTGACAATCAAGAACACACAACT 1427
Query 1517 TCAGATGTTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAG 1576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TCAGATGTTAAAGTTGCAAACAAGAGTTTTTCTTGTAGATATTCAGAAGAGAAGAAGAAG 1487
Query 1577 CCTGTAG-TATTGCATCTCGAGATAACAGAGAAATTAGCCGAGAGGTTGAAGACTAAAGG 1635
||||| | |||||||||| |||||| | ||||||||||||||||||||||||| || |||
Sbjct 1488 CCTGT-GCTATTGCATCTTGAGATATCCGAGAAATTAGCCGAGAGGTTGAAGAGTAGAGG 1546
Query 1636 AGGATATAATTTGAAG-GTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGGTAAA 1694
||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1547 AGGATATAACTTGA-GTGTTATGGATAGTTTCAGAGAAGGCTTATGAGGAAAATGCTAAA 1605
Query 1695 CGTCCCA 1701
||||||
Sbjct 1606 GGTCCCA 1612
> Ahg914136 jgi|Araly1|914136|Al_scaffold_0001_4390
Length=1791
Score = 198 bits (107), Expect = 1e-49
Identities = 128/138 (93%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 1704 TCATGATTCAGCAGTCACATCTTCCAATTCATCTGGCAATCTCATTTGCACCCCAACAG- 1762
||| |||| || ||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 1791 TCAAGATTGAGAAGTCAAATCTTCCAATTCATCTGGCAATCTCATTTGCACCCCTAC-GT 1733
Query 1763 TGTCGAGAGTCTTGTACAAATCATCAGATTCAAGGGGTTTCTTATCATCGAAAGCTATGA 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 TGTCGAGAGTCTTGTACAAATCATCAGATTCAAGGGGTTTCTTATCATCGAAAGCTATGA 1673
Query 1823 ATTCACAAAGCTTGCCTT 1840
||||| |||||| ||||
Sbjct 1672 ATTCATGAAGCTTACCTT 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5