BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50300.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923473 jgi|Araly1|923473|scaffold_104754.1 1520 0.0
> Ahg923473 jgi|Araly1|923473|scaffold_104754.1
Length=985
Score = 1520 bits (823), Expect = 0.0
Identities = 886/916 (97%), Gaps = 5/916 (1%)
Strand=Plus/Plus
Query 118 TCCTACTAATGGATCAGTCTACGTTTCAAATCTCCCCTTAGGAACTGACGAGAATATGTT 177
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 47 TCCTACTAATGGATCAGTCTACGTTTCCAATCTCCCATTAGGAACTGACGAGAATATGTT 106
Query 178 GGCTGACTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGTACTCCTAA 237
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 107 GGCTGAGTATTTTGGGACCATTGGGTTGCTTAAGAGAGACAAACGAACTGGCACTCCTAA 166
Query 238 GGTATGGCTGTACCGGGATAAAGAAACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 167 GGTATGGCTGTACCGGGATAAAGAGACTGATGAGCCCAAGGGAGATGCTACTGTTACCTA 226
Query 298 TGAGGATCCGCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TGAGGATCCCCATGCTGCTTTGGCTGCTGTTGAATGGTTCAATAACAAAGATTTTCATGG 286
Query 358 AAACACCATTGGAGTTTTTATGGCCGAGTCGAAGA-ATAAAAATGCTGGTGATGCAGTTG 416
|||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 287 AAACACCATTGGAGTTTTTATGGCTGAGTCG-AGACATAAAAATGCTGGTGATGCAGTTG 345
Query 417 AGTTTGTTGAATTCGATGGAGGTGCTGAGGAAACAAATGGAGGTGCTGGAAGGGGGAGGG 476
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |
Sbjct 346 AGTTTGTTGAATTCGATGGAGGTGCTCAGGAAACAAATGAAGGTGCTGGAAGGGGTAGAG 405
Query 477 GTCAGGCTGATTCTTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCTAATA 536
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 406 GTCAGGCTGATCCGTCGGCAAAGCCATGGCAGCAAGATGGTGACTGGATGTGCCCAAATA 465
Query 537 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAAGTTGTACAAATGTGAATTTTGCATTCCGTGGGGTTTGTAACCGCTGTGGAACTGCTA 525
Query 597 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGT---CGTGGAAGGGGTCGAGGTG 653
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 526 GACCAGCTGGTGCATCTGGTGGCAGCATGGGTGCTGGTGGTCGTGGAAGGGGTCGAGGTG 585
Query 654 GAGGCGCTGATGGTGGGGCCCCGGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 713
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 586 GAGGCGCTGATGGTGGGGCACCTGGGAAGCAGCCCAGTGGTGCTCCTACTGGTCTCTTTG 645
Query 714 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCGAAACGTCTAAAAT 773
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 646 GTCCAAATGATTGGGCTTGTCCAATGTGTGGCAATGTCAACTGGGCTAAGCGTTTAAAAT 705
Query 774 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGCCGTG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 706 GTAATATCTGCAACACCAATAAACCTGGTCAGAATGAAGGTGGTGTGAGGGGAGGTCGTG 765
Query 834 GTGGTGGTTACAAGGAATTAGATGAACAAGAATTAGAGGAAACGAAGAGACGCAGGCGTG 893
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 766 GTGGTGGTTACAAGGAATTGGATGAACAAGAATTAGAGGAAACAAAGAGACGCAGGCGTG 825
Query 894 AGGCTGAAGAAGATGATGGTGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 953
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AGGCTGAAGAAGATGATGGCGAAATGTATGATGAGTTTGGGAATCTAAAGAAGAAGTACC 885
Query 954 GTGTTAAAACAAACCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 1013
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GTGTTAAAACAAGCCAAGCTGACACCAGACCTGCTGTTGCTGCTGGTCGTGCTGGGTGGG 945
Query 1014 AAGTCGAGGAACTAGG 1029
|||| |||||||||||
Sbjct 946 AAGTAGAGGAACTAGG 961
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 87 TTTGATGAAATTGGATTACGATGGCTGGATAT 118
||||||||||||||||||||||||||||||||
Sbjct 1 TTTGATGAAATTGGATTACGATGGCTGGATAT 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5