BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50310.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314430 jgi|Araly1|314430|fgenesh1_pm.C_scaffold_1003210 2560 0.0
Ahg318745 jgi|Araly1|318745|fgenesh1_pm.C_scaffold_3001761 1177 0.0
> Ahg314430 jgi|Araly1|314430|fgenesh1_pm.C_scaffold_1003210
Length=1554
Score = 2560 bits (1386), Expect = 0.0
Identities = 1499/1555 (96%), Gaps = 2/1555 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGGAGCCTTTGTATCAGAAGGTGGTGGTGGAGGAAACAGCTATGAAGGCGGA 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGGAGGAGCCTTTGTATCAGAGGGTGGTGGTGGAGGAAACAGCTATGAAGGCGGA 60
Query 61 GTCACCGTCTTTGTCATCATGACATGTATTGTGGCCGCTATGGGAGGTCTCCTCTTTGGT 120
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 GTCACCGTCTTTGTCATCATGACCTGTATTGTGGCCGCTATGGGAGGTCTTCTCTTTGGT 120
Query 121 TATGACCTCGGTATCTCAGGTGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTTTC 180
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGACCTCGGAATCTCAGGAGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTTTC 180
Query 181 CCGGAGGTGGATAAGCAAATGCACGAAGCAAGGCGCGAGACTGCTTACTGCAAATTCGAT 240
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCGGAGGTGGATAGGCAAATGCACGAAGCGAGGCGCGAGACTGCTTACTGCAAATTCGAT 240
Query 241 AACCAATTGCTACAGTTGTTCACTTCCTCACTCTACCTCGCGGCACTCGCGTCTTCCTTT 300
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 241 AACCAATTGCTCCAGTTGTTCACTTCCTCACTCTACCTCGCGGCTCTCGTGTCTTCCTTT 300
Query 301 GTAGCTTCGGCTGTCACAAGGAAGTACGGACGCAAAATCTCCATGTTTGTTGGAGGGGTT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GTAGCTTCGGCTGTCACAAGGAAGTACGGACGTAAAATCTCCATGTTTGTTGGAGGGGTT 360
Query 361 GCTTTCCTCATAGGTTCTCTATTCAACGCATTTGCTACCAATGTCGCAATGCTCATCGTT 420
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 361 GCTTTCCTCATAGGTTCTCTATTTAACGCATTTGCCACCAATGTCGCAATGCTCATCATT 420
Query 421 GGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCCAATCAGTCTACGCCTGTTTATCTC 480
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 421 GGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCTAATCAGTCTACGCCGGTTTATCTC 480
Query 481 TCGGAGATGGCTCCAGCGAAGATCCGAGGAGCACTTAACATCGGGTTTCAAATGGCTATA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGGAGATGGCTCCTGCGAAGATCCGAGGAGCACTTAACATCGGGTTTCAAATGGCTATA 540
Query 541 ACCATCGGGATTTTGA-TTGCAAACTTAATCAACTACGGAACATCTCAAATGGCTAAGAA 599
|||||||||||||| | |||| ||| |||||||||| ||||||||||||||||||| |||
Sbjct 541 ACCATCGGGATTTT-AGTTGCGAACCTAATCAACTATGGAACATCTCAAATGGCTAGGAA 599
Query 600 CGGATGGAGAGTATCATTGGGTTTAGCCGCTGTACCGGCAGTTATTATGGTTATTGGATC 659
|||||||||||| || ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 600 CGGATGGAGAGTGTCCTTGGGTTTAGCCGCTGTTCCGGCAGTTGTTATGGTTATCGGATC 659
Query 660 TTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAACAAGCGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAGCAAGCGAG 719
Query 720 AGAGATGTTGCAAAAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAAGATCTGTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AGAGATGTTGCAAAAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAAGATCTATG 779
Query 780 TGATGCTTGTGAGGCTGCTAAGAAAGTGGATAATCCATGGAAGAACATTTTCCAACAGGC 839
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 780 TGATGCTTGTGAGGCTGCTAAGAAAGTGGAGAACCCGTGGAAGAACATTTTCCAACATGC 839
Query 840 AAAATACAGACCCGCTCTTGTTTTCTGTTCTGCGATTCCTTTCTTCCAACAGATTACTGG 899
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AAAATACAGACCCGCGCTTGTTTTCTGTTCTGCAATTCCTTTCTTCCAACAGATTACTGG 899
Query 900 TATCAATGTTATCATGTTCTACGCCCCCGTTCTCTTTAAGACTCTCGGTTTTGCGGATGA 959
||||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 900 TATCAATGTGATCATGTTCTACGCCCCGGTTCTCTTTAAAACACTCGGTTTCGCGGATGA 959
Query 960 TGCCTCGCTCATCTCAGCGGTTATTACGGGTGCGGTCAATGTTGTCTCTACCCTTGTCTC 1019
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 TGCCTCGCTCATCTCAGCCGTTATTACGGGTGCTGTCAATGTTGTCTCTACCCTTGTCTC 1019
Query 1020 CATCTATGCGGTTGACAGGTACGGAAGAAGGATTCTCTTCCTTGAAGGAGGCATCCAAAT 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATCTATGCGGTTGACAGATACGGAAGAAGGATTCTCTTCCTTGAAGGAGGCATCCAAAT 1079
Query 1080 GATTGTTTCCCAGATCGTTGTTGGTACCTTGATTGGTATGAAGTTTGGAACCACGGGATC 1139
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 GATCATTAGCCAGATCGTTGTTGGTACCTTGATTGGTATGAAGTTTGGAACCACAGGATC 1139
Query 1140 AGGGACCTTAACACCTGCAACAGCAGATTGGATCCTGGCTTTCATATGTTTGTATGTTGC 1199
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 AGGGACCTTAACACCTGCAACAGCAGATTGGATCCTAGCTTTCATATGTTTGTATGTTGC 1199
Query 1200 AGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAGTACCAAGTGAGATCTGTCCATT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAGTACCAAGTGAGATCTGTCCATT 1259
Query 1260 GGAAATCAGACCAGCGGGACAAGCCATCAACGTCTCTGTCAACATGTTCTTCACTTTCCT 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 GGAAATCAGACCAGCGGGGCAAGCCATCAACGTCTCTGTCAACATGTTCTTCACTTTTCT 1319
Query 1320 CATTGGACAGTTTTTCCTCACGATGCTTTGCCACATGAAGTTTGGTCTCTTCTACTTCTT 1379
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATTGGACAATTTTTCCTCACGATGCTTTGCCACATGAAGTTTGGTCTCTTCTACTTCTT 1379
Query 1380 TGGAGGAATGGTTGCAGTCATGACCGTCTTCATCTACTTCTTGTTGCCGGAGACAAAAGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGAGGAATGGTTGCAGTCATGACCGTCTTCATCTACTTCTTGTTGCCGGAGACAAAAGG 1439
Query 1440 GGTTCCAATTGAAGAAATGGGAAGAGTATGGAAGCAACATCCGTTCTGGAAACGTTACAT 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGTTCCTATTGAAGAAATGGGAAGAGTATGGAAGCAACATCCGTTCTGGAAACGTTACAT 1499
Query 1500 GCCAGATGATGCTGTTATTGGAGGAGGTGAAGAAAACTACGTCAAGGAGGTTTGA 1554
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1500 CCCAGATGATGCTGTTATTGGAGGAGGTGAAGAAAACTATGTCAAGGAGGTTTGA 1554
> Ahg318745 jgi|Araly1|318745|fgenesh1_pm.C_scaffold_3001761
Length=1548
Score = 1177 bits (637), Expect = 0.0
Identities = 1259/1554 (81%), Gaps = 63/1554 (4%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGGAGCCTTTGTATCAGAAGGTGGTGGTGGAGGAA-ACAGCTATGAAGGCGG 59
||||| |||||||| ||||||| |||||| || ||||| |||| | || |||||||| ||
Sbjct 1 ATGGCAGGAGGAGCTTTTGTATTAGAAGGAGGAGGTGGTGGAAGA-AGTTATGAAGGAGG 59
Query 60 AGTCACCGTC-TTTGTCATCATGACATGTATTGTGGCCGCTATGGGAGGTCTCCTCTTTG 118
|||||| | | || || ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 60 AGTCACAG-CATTCGTTATCATTACATGTATTGTGGCCGCCATGGGAGGTCTCCTCTTTG 118
Query 119 GTTATGACCTCGGTATCTCAGGTGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTT 178
|||| ||||| || |||||||| ||||| ||||| |||||||||||||| | |||||| |
Sbjct 119 GTTACGACCTTGGAATCTCAGGAGGAGTTACATCAATGGAGGAGTTTCTTACCAAGTTCT 178
Query 179 TCCCGGAGGTGGATAAG-CAAATGCACGAA-GC-AAGGCGCGAGACTGCTTACTGCAAAT 235
|||| | || || || || ||||| || || || || ||| || ||||| |||||||
Sbjct 179 TCCCTCAAGTAGA-GAGCCAGATGCA-AAAGGCGAA-GCACGACACGGCTTATTGCAAAT 235
Query 236 TCGATAACCAATTGCTACAGTTGTTCACTTCCTCACTCTACCTCGCGGCACTCG-CGTCT 294
||||||||||| |||| || ||||||||||| || |||||||| || || || | | ||
Sbjct 236 TCGATAACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTTGCAGCTCTTGTAG-CT 294
Query 295 TCCTTTGTAGCTTCGGCTGTCACAAGGAAGTACGGACGCAAAATCTCCATGTTTGTTGGA 354
|||||| | ||||||| | | || |||||| | ||||| ||| |||| |||||| | ||
Sbjct 295 TCCTTTATGGCTTCGGTTATAACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATCGGT 354
Query 355 GGGGTTGCTTTCCTCATAGGTTCTCTATTCAACGCATTTGCTACCAATGTCGCAATGCTC 414
|| ||||||||||||| ||| | || |||||||||||||| ||||| |||||||||
Sbjct 355 GGACTTGCTTTCCTCATCGGTGCACTTTTCAACGCATTTGCCGTTAATGTTGCAATGCTC 414
Query 415 ATCGTTGGTAGA-TTGTTGCTCGGAGTCGGTGTTGGATTTGCCAATCAGTCTACGCCTGT 473
|| | |||||| || |||||||| || |||||||||||||| ||||||||||| || ||
Sbjct 415 ATAATCGGTAGACTT-TTGCTCGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGT 473
Query 474 TTATCTCTCGGAGATGGCTCCAGCGAAGATCCGAGGAGCACTT-AACATCGGGTTTCAAA 532
|| || ||||| ||||||||||||||||| ||||||| || |||||||| ||||| |
Sbjct 474 ATACCTATCGGAAATGGCTCCAGCGAAGATAAGAGGAGC-TTTAAACATCGGTTTTCAGA 532
Query 533 TGGCTATAACCATCGGGATTTTGATTGC-AAACTTAATCAACTACGGAACATCTCAA-AT 590
|||||||||| || || || ||| | || || | | || ||||| |||||||| || ||
Sbjct 533 TGGCTATAACGATTGGAATCTTGGTGGCTAATC-TGATAAACTATGGAACATC-AAAGAT 590
Query 591 GGCT-AAGAACGGATGGAGAGTATCATTGGGTTTAGCCGCTGTACCGGCAGTTATTATGG 649
|||| || | |||||||| || || || |||||||| ||||| || || ||| | ||||
Sbjct 591 GGCTCAA-CATGGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTAATGG 649
Query 650 TTATTGGATCTTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACG 709
| |||||||| || | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 650 TGATTGGATCATTCATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATG 709
Query 710 AACAAGCGAGAGAGATGTTGCAA-AAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTT 768
| |||| | | |||||||| || ||||| ||||||||||| ||||| || | ||||||
Sbjct 710 AGGAAGCAAAACAGATGTTG-AAGAAGATACGTGGAGCTGACAACGTTGACCATGAGTTT 768
Query 769 CAAGATCTG-TGTGATGCTTGT-GAGGCTGCTAAGAAAG-TGGA-TAATCCATGGAAGAA 824
|||||||| | |||||| || || ||||| || |||| |||| || ||||||||||||
Sbjct 769 CAAGATCTCATA-GATGCT-GTTGAAGCTGCCAA-AAAGGTGGAATA-TCCATGGAAGAA 824
Query 825 CATTTTCCAACAGGCAAAATACAGACCCGCTCTTGTT-TTCTGTTCTGCGATTCC-TTTC 882
||| | | || | | |||||||| ||| || | ||||| || |||||||| |||
Sbjct 825 CATCATGGAG-AGT-AGA-TACAGACCAGCT-TTAATCTTCTGCTCGGCGATTCCCTTT- 879
Query 883 TTCCAACAGATTACTGGTATCAATGTTATCATGTTCTACGCCCCCGTTCTCTTTAAGACT 942
||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||||||
Sbjct 880 TTCCAACAGATCACTGGAATCAATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACT 939
Query 943 CTCGGTTTTGCG-GATGATGCCTCGCTC--ATCTCAGCGGTTATTACGGGTGCGGTCAAT 999
|| ||||||| | || ||||| | |||| || || || ||||| || |||| || ||
Sbjct 940 CTTGGTTTTG-GTGACGATGC-T-GCTCTTATGTCCGCCGTTATAACCGGTGTTGTTAAC 996
Query 1000 GTTG-TCTCTACCCTTGTCTCCATCTATGCGGTTGACAGGTACGGAAGAAGGATT-CTCT 1057
| | |||| ||| ||||||| || || |||||||| || || ||||| ||| || || |
Sbjct 997 AT-GCTCTCAACCTTTGTCTCTATTTACGCGGTTGATAGATATGGAAGGAGG-TTGCTTT 1054
Query 1058 TCCTTGAAGGAGGCATCCAAATGATTG-TTTCCCAGAT-CGTTGTTGGTACCTTGATTGG 1115
|||| ||||| ||||| |||||| || ||| ||| | | | |||||| | || || ||
Sbjct 1055 TCCTCGAAGGTGGCATTCAAATG-TTCATTTGTCAGCTTC-TCGTTGGTTCTTTCATCGG 1112
Query 1116 TATGAAG-TTTGGAACCACGGGATCAGGGACCTTAACACCTGCAACAGCAGATTGGATCC 1174
| ||| ||||||||||| ||| | || ||||| || || ||||||||||| ||||| |
Sbjct 1113 TGC-AAGATTTGGAACCACAGGAACCGGAACCTTGACGCCAGCAACAGCAGACTGGATTC 1171
Query 1175 TGGCTTTCATATGTTTGTATGTTGCAGGATTTGCATGGTCATGGGGTCCATTAGGATGGT 1234
| |||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1172 TTGCTTTCATATGTGTGTACGTTGCAGGATTTGCATGGTCATGGGGCCCATTGGGATGGT 1231
Query 1235 TAGTACCAAGTGAGATCTGTCCATTGGAAAT-CAGACCAGCGGGACAAGCCATCAACGTC 1293
| ||||| ||||| |||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1232 TGGTACCGAGTGAAATCTGTCCATTGGAGATTC-GACCAGCGGGACAAGCCATCAACGTC 1290
Query 1294 TCTGTCAACATGTTCTTCACTTTCCTCATTGGACAGTT-TTTCCTCACGATGCTTTGCCA 1352
|| ||||||||||||||||||||||||||||| || || ||| | || |||||||| ||
Sbjct 1291 TCGGTCAACATGTTCTTCACTTTCCTCATTGGTCAATTCTTTT-TGACAATGCTTTGTCA 1349
Query 1353 CATGAAGTTTGGTCTCTTCTACTTCTTTGGAGGAATGGTTGC-AGTCATGACCGTCTTCA 1411
||||||||||||||| ||||||||||||| | | |||||||| | ||||||| || ||||
Sbjct 1350 CATGAAGTTTGGTCTATTCTACTTCTTTGCAAGCATGGTTGCGA-TCATGACGGTTTTCA 1408
Query 1412 TCTACTTCTTGTTGCCGGAGACAAAAGGGGTTCCAATTGAAGAAATGGGAAGAGTATGGA 1471
| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||
Sbjct 1409 TTTACTTTTTGTTGCCGGAGACCAAAGGTGTTCCTATTGAAGAGATGGGAAGAGTTTGGA 1468
Query 1472 AGCAACATCCGTTCTGGAAAC-GTTACATGCCAGATGATGCTGTTATTGGAGGA 1524
|||||||| |||||||||| || | || ||||||||||| ||||||| |||
Sbjct 1469 AGCAACATTGGTTCTGGAAAAAGT-ATATCCCAGATGATGCAATTATTGGTGGA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5