BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50320.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923475 jgi|Araly1|923475|scaffold_104756.1 963 0.0
Ahg952532 jgi|Araly1|952532|scaffold_85100002.1 566 1e-160
> Ahg923475 jgi|Araly1|923475|scaffold_104756.1
Length=595
Score = 963 bits (521), Expect = 0.0
Identities = 570/594 (96%), Gaps = 2/594 (0%)
Strand=Plus/Plus
Query 53 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGTTCGACGATTCTTATGCGAT 112
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGCTCAACGATTCTTATTCGAT 60
Query 113 CATATCTCACTCCTCCGGTTCGTTCATGTTCTCCGGCAACCTCCGTTTCCGTCAAACCTC 172
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 CATATCTCACTCCTCCGGTCCGTTCATGTTCTTCGGCAACCTCCGTTTCCGTCAAATCTG 120
Query 173 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCGTTAAGCTCCG 232
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCCTTAAGCTCCG 180
Query 233 GTGCTAGAAGAA-CCAGAAAAAGCTCTAGTTCGGTGATAAGATGCGGCGGAATCAAAGAG 291
||| |||| ||| | || ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 181 GTGGTAGAGGAAGCAAG-AAATTCTCTAGTTCGGCGATAAGATGCGGCGGAATCAAAGAG 239
Query 292 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGCCCAGCCGGTTTTGGTTGAA 351
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 240 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGACCGGCCGGTTTTGGTTGAA 299
Query 352 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT 359
Query 412 CAGGAATATGGTGACAAATTGACGATTGTAAAGATTGATCACGACGCTAATCCAAAGTTA 471
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 360 CAGGAATATGGTGACAAATTGACGATTGTAAAGATTGATCATGACGCTAACCCAAAGTTA 419
Query 472 ATAGCGGAGTTCAAGGTTTATGGTTTACCGCATTTCATTCTCTTCAAGGACGGGAAGGAA 531
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATAGCGGATTTCAAGGTTTATGGTTTACCGCATTTCATTCTCTTCAAGGACGGGAAGGAA 479
Query 532 GTTCCAGGGAGCAGAAGGGAAGGTGCTATTACAAAGGCCAAGCTTAAGGAGTACATTGAT 591
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTCCAGGGAGTAGAAGGGAAGGTGCTATTACAAAGGCCAAGCTTAAGGAGTACATTGAC 539
Query 592 GGTCTCTTGAACTCAATATCTGTTGCTTAATCGTCTCTCTCCCCACCGGTATTC 645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 GGTCTCTTGAACTCAATATCTGTTGCTTAATCGTCTCTCTTCCCACCGGTATTC 593
> Ahg952532 jgi|Araly1|952532|scaffold_85100002.1
Length=391
Score = 566 bits (306), Expect = 1e-160
Identities = 345/364 (95%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 53 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGTTCGACGATTCTTATGCGAT 112
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1 AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGCTCAACGATTCTTATTCGAT 60
Query 113 CATATCTCACTCCTCCGGTTCGTTCATGTTCTCCGGCAACCTCCGTTTCCGTCAAACCTC 172
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 CATATCTCACTCCTCCGGTCCGTTCATGTTCTTCGGCAACCTCCGTTTCCGTCAAATCTG 120
Query 173 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCGTTAAGCTCCG 232
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCCTTAAGCTCCG 180
Query 233 GTGCTAGAAGAA-CCAGAAAAAGCTCTAGTTCGGTGATAAGATGCGGCGGAATCAAAGAG 291
||| |||| ||| | || ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 181 GTGGTAGAGGAAGCAAG-AAATTCTCTAGTTCGGCGATAAGATGCGGCGGAATCAAAGAG 239
Query 292 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGCCCAGCCGGTTTTGGTTGAA 351
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 240 ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGACCGGCCGGTTTTGGTTGAA 299
Query 352 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT 411
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCCGCTATGGAAGCCTTATCT 359
Query 412 CAGG 415
||||
Sbjct 360 CAGG 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5