BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50325.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887694 jgi|Araly1|887694|Al_scaffold_0851_1 464 3e-130
Ahg914141 jgi|Araly1|914141|Al_scaffold_0001_4395 462 1e-129
Ahg923476 jgi|Araly1|923476|scaffold_104757.1 346 1e-94
Ahg897211 jgi|Araly1|897211|Al_scaffold_0005_1177 93.5 2e-18
> Ahg887694 jgi|Araly1|887694|Al_scaffold_0851_1
Length=441
Score = 464 bits (251), Expect = 3e-130
Identities = 379/438 (87%), Gaps = 19/438 (4%)
Strand=Plus/Plus
Query 145 GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCAT-CCACTCAAGTTGCAACATTGGA 203
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 4 GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCATACC-CTCAAATTGCAACAATGGA 62
Query 204 TACTTATGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAACACCTTTGATCTAAT 263
|| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 63 TATTTCTGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAAAACCTTAGATCTGAT 122
Query 264 AAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCCCAGTTCTAAGGGTTCTTATGA 323
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 123 GAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCGCAGTTCTAAGGAATCCTATAA 182
Query 324 GCTATGTTTACATCTTTTTAATCTT---ATCAATCCT-CTTGAAACCGCACTTAAAGCTT 379
| |||||| | | ||||||| ||| ||| || | ||||| | | ||||||||||
Sbjct 183 GATATGTTCAGAGCTTTTTAGCCTTGGTATCCATT-TGCTTGAGTCTTCTCTTAAAGCTT 241
Query 380 TGGCAACCAATGACTATGACACTTTAAACAGGAATGTT-GATGCTATGTCT-CA-ATTCG 436
|||||||||||||||||||||| ||| ||||||| ||| | || ||||||| | || ||
Sbjct 242 TGGCAACCAATGACTATGACACCTTAGACAGGAACGTTAG-TGATATGTCTGCCTATGCG 300
Query 437 CGATGGAATGTGAAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCAAAGCTCTTGAAAA 496
|| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 301 -GA-GGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCACAGCTCTT-AAAA 357
Query 497 GGG-TTTCTATCGTCGAAAATGTA--TCCGACATTATTTTTGTAATTGTGGAATGTTTTT 553
||| ||||||| |||||||||||| || ||||| || |||||||| |||||||||||
Sbjct 358 GGGGTTTCTATTGTCGAAAATGTAGGTC--ACATTGTTCTTGTAATTTTGGAATGTTTTC 415
Query 554 TAAGAAAAGAAGAAACTT 571
||||||||||| ||||||
Sbjct 416 TAAGAAAAGAAAAAACTT 433
> Ahg914141 jgi|Araly1|914141|Al_scaffold_0001_4395
Length=411
Score = 462 bits (250), Expect = 1e-129
Identities = 360/412 (87%), Gaps = 11/412 (3%)
Strand=Plus/Plus
Query 172 ATGAAATCATCCACTCAAGTTGCAACATTGGATACTTATGATCTCGCCAAATTTTTGATC 231
|||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||
Sbjct 1 ATGAAATCATCCCCTCAAATTGCAACATTGGATATTTCTGATCTCGCCAAATTTTTGATC 60
Query 232 AATTATGATTTTCAAAACACCTTTGATCTAATAAAGCATTTCCAGTCACTCACAAACAGC 291
||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 61 AATTATGATTTTCAAAAAACCTTAGATCTGATGAAGCATTTCCAGTCACTCACAAACAGC 120
Query 292 ACAACCGATCCCAGTTCTAAGGGTTCTTATGAGCTATGTTTACATCTTTTTAATCTT--- 348
|||||||||| ||||||||||| ||||||| || |||||| | ||||||||| |||
Sbjct 121 ACAACCGATCGCAGTTCTAAGGATTCTTATAAGATATGTTCAGATCTTTTTAGCCTTGGT 180
Query 349 ATCAATCCTCTTGAAACCGCACTTAAAGCTTTGGCAACCAATGACTATGACACTTTAAAC 408
||| || | ||||||| ||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 181 ATCCATTCGCTTGAAATCGCTTTTAAAGCTTTGACAACCAATGACTATGACACCTTAAAC 240
Query 409 AGGAATGTTGATGCTATGTCTCAAT-TCGCG-ATGGAATGTGAAAGCGAGCTGTCAAGTG 466
|||| ||||| | ||||||| | | | ||| | ||| |||| |||||||||||||||||
Sbjct 241 AGGACTGTTGGTAATATGTCTGACTAT-GCGGA-GGACTGTGGAAGCGAGCTGTCAAGTG 298
Query 467 TCATCAAGCCTATTCCAAAGCTCTTGAAAAGGG-TTTCTATCGTCGAAAATGTATCCGAC 525
| ||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||| |||
Sbjct 299 TTATCAAGCCTATTCCACAGCTCTT-AAAAGGGGTTTCTATTGTCCAAAATGTATCTGAC 357
Query 526 ATTATTT-TTGTAATTGTGGAATGTTTTTTAAGAAAAGAAGAAACTTCATGT 576
||| ||| |||||||| ||||||||||| ||||||||||| |||||| ||||
Sbjct 358 ATT-TTTCTTGTAATTTTGGAATGTTTTCTAAGAAAAGAAAAAACTTTATGT 408
> Ahg923476 jgi|Araly1|923476|scaffold_104757.1
Length=362
Score = 346 bits (187), Expect = 1e-94
Identities = 312/369 (85%), Gaps = 22/369 (6%)
Strand=Plus/Plus
Query 242 TTCAAAACA-CCTTTGATCTAATAAAGCATTTCCAGTCACTCACAAACAGCACAACCGAT 300
||||||| | |||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCAAAA-AGCCTTAGATCTGATGAAGCATTTCCAGTCACTCACAAACAGCACAACCGAT 59
Query 301 CCCAGTTCTAAGGGTTCTTATGAGCTATGTTTACATCTTTTTAATCTT---ATCAATCCT 357
| ||||||||||| ||| ||| ||||||||| | | ||||||| ||| ||| || |
Sbjct 60 CGCAGTTCTAAGGATTCCTATAAGCTATGTTCAGAACTTTTTAGCCTTGGTATCCATTCG 119
Query 358 CTTGAAACCGCACTTAAAGCTTTGGCAACCAATGACTATGACACTTTAAACAGGAATGTT 417
||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 120 CTTGAAATCGCTTTTAAAGCTTTGGCAACCAATGACTATGACACCTTAAACAGGACCGTT 179
Query 418 GATGCTATGTCT-CA-ATTCGCGATGGAATGTGAAAGCGAGCTGTCAAGTGTCATCAAGC 475
| | ||||||| | || || || |||||||| ||||||||||||||||||||||||||
Sbjct 180 GGTAATATGTCTGCCTATGCG-GA-GGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGC 237
Query 476 CTATTCCAAAGCTCTTGAAAAGGG-TTTCTATCGTCGAAAATGTA--TCCGACATTATTT 532
|||||||| ||||||| ||||||| ||||||| |||||||||||| || ||||| ||
Sbjct 238 CTATTCCACAGCTCTT-AAAAGGGGTTTCTATTGTCGAAAATGTAGGTC--ACATTGTTC 294
Query 533 TTGTAATTGTGGAATGTTTTTTAAG-AAAAGAAGAAACTT-CATGT-AAGGAATCAGTAT 589
|||||||| ||||||||||| || | ||||||| |||||| | ||| ||| ||||||||
Sbjct 295 TTGTAATTTTGGAATGTTTTCTA-GTAAAAGAAAAAACTTTC-TGTTAAG-AATCAGTAC 351
Query 590 C-AAATCTA 597
| |||||||
Sbjct 352 CCAAATCTA 360
> Ahg897211 jgi|Araly1|897211|Al_scaffold_0005_1177
Length=588
Score = 93.5 bits (50), Expect = 2e-18
Identities = 153/201 (76%), Gaps = 14/201 (7%)
Strand=Plus/Plus
Query 55 GTTTTACTTCTTTTTGTTGTCTCATCATATGCAA-GATTTAATACGAAGGTTACAACAGA 113
|||||||||||||||||||||||||||||||||| | |||| ||| | ||||||||||||
Sbjct 46 GTTTTACTTCTTTTTGTTGTCTCATCATATGCAAAG-TTTAGTACCATGGTTACAACAGA 104
Query 114 TGAAATATGTGGCATGTGCGCACGCAGAGCAG-T--CAA-TGCGTCATTTTGCTATGAG- 168
||| || | | | ||| || || ||||| | ||| | | ||||| || | ||||
Sbjct 105 TGAGATCCGCACCTTATGC--AC-CAAAGCAGGTGTCAAAT-CTTCATTGTGTTTTGAGG 160
Query 169 TTCATGAAATCATC-CACTCAAGTTGCAACATTGGATACTTATGATCTCGCCAAATTTTT 227
||| | ||| || | | || || |||| | | | ||| || || ||||||||||| |||
Sbjct 161 TTC-TAAAAGCAACTC-CTGAAATTGCTAGACTAGATTTTTCTGGTCTCGCCAAATATTT 218
Query 228 GATCAATTATGATTTTCAAAA 248
||| |||||| || ||||||
Sbjct 219 GATTAATTATCATGCTCAAAA 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5