BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50330.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914143 jgi|Araly1|914143|Al_scaffold_0001_4397 800 0.0
> Ahg914143 jgi|Araly1|914143|Al_scaffold_0001_4397
Length=1101
Score = 800 bits (433), Expect = 0.0
Identities = 619/707 (88%), Gaps = 19/707 (3%)
Strand=Plus/Plus
Query 140 GCCATCGATGGAAATTGGTTCATGGCCCAGGATCTTTGGATACAGAACACGGCTGGACCA 199
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 403 GCCATCGATGGAGATTGGTTCATGGCCCAGGATATTTGGATACAGAACACGGCTGGACCG 462
Query 200 GCAAAGGGACAGGCTGTTGCTCTTCGAGTGAGCGGTGATGCTGTAGTCATCTATCGGTGT 259
||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||||
Sbjct 463 GCAAAGGGACAGGCTGTTGCTCTTCGAGTTAGCGGTAATTATGTAGTCATCTATCAGTGT 522
Query 260 CGCATTGATGCTTATCAGGATACCCTCTATGCCCATTCATACAGACAATTTTACCGTGAC 319
||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 523 CGCATTGATGCTTATCAGGATACACTCTATGCCCATTCAAACACACAATTTTACCGTGAC 582
Query 320 TGCTTCATCACGGGCACCGTAGACTTCATTTTCGGTCATGCCTCAGCAATTTTTCAAAAC 379
|||||||||||||| |||||||||||||| | ||| | ||| |||||| |||| ||||||
Sbjct 583 TGCTTCATCACGGGTACCGTAGACTTCATATGCGGACGTGCATCAGCAGTTTTCCAAAAC 642
Query 380 TGTC-GAATTGAGGCCCGGAAGCCAATGGAAGGACAGAGCAATGTTATAACTGCTCAACA 438
|||| || |||||||||| ||||||| |||||||||||| || || ||||||||||||||
Sbjct 643 TGTCAGA-TTGAGGCCCGAAAGCCAACGGAAGGACAGAGTAACGTCATAACTGCTCAACA 701
Query 439 AAGTGACAAGCCGGGTA--CAT-CGGGGTTTT-CAATTCAGAATTGCAGTAT-AACGGCA 493
| ||| |||| | | ||| |||| |||| || ||||||| |||||||| || |||
Sbjct 702 ACGTGGCAAGGATGACAAACATTCGGG-TTTTACATTTCAGAACTGCAGTATCAA-GGCG 759
Query 494 AGTTCAGATCTTGTTCCAGTAAAAAGAATGGTGAAGACGTTCTTGGGAAGACCGTGGGGT 553
||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 760 AGTTCAGATCTTGCTCCACTAAAAAGAATGGTGAAAACGTTCCTGGGAAGACCGTGGGGT 819
Query 554 GATTTCTCAACAGTAGTGTTTATGGAGTCTTATCTGGATGATATGATAGATCCAA-TGGG 612
||| ||||||| || ||||| ||||| || ||| |||||||| |||||||||| | |||
Sbjct 820 GATCTCTCAACTGTGGTGTTCATGGAATCATATATGGATGATTTGATAGATCCTACTGG- 878
Query 613 ATGGACTCCGTGGAATAGCAGCACCAC-AGGACGTTTGTCCACACTATACTATGGAGAGT 671
||||||||||||||||||||||||||| || ||| ||||||||| ||| ||||||||| |
Sbjct 879 ATGGACTCCGTGGAATAGCAGCACCACTAG-ACGATTGTCCACAATATTCTATGGAGAAT 937
Query 672 A-CAAAAACAAAGGCCCCAGAGCAAACACAAGCCAGAGAGTTCG-CTGAAAGGGGTTCAA 729
| | ||| |||||||||| |||||||||||||||||||||| || ||| ||||| |||||
Sbjct 938 ATCGAAA-CAAAGGCCCCGGAGCAAACACAAGCCAGAGAGT-CGACTGGAAGGGCTTCAA 995
Query 730 GATAATAACCGATCCGATAGAAGCGAACAAGTTTACTGTTGG-GAAGTTGATAAATAAAG 788
| |||| |||||||||||||||||| ||||||||||||||| ||| || ||||| | ||
Sbjct 996 GGTAATTACCGATCCGATAGAAGCGGGCAAGTTTACTGTTGGAGAA-TTCATAAACAGAG 1054
Query 789 ACCCGTGGCTGAACGCCACCGGAATTCCGTACAACGAGGGTCTTTGA 835
|| | |||||||||||||||||| |||||| |||||||||| |||
Sbjct 1055 ACTCTTGGCTGAACGCCACCGGAGTTCCGTTTTACGAGGGTCTCTGA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5