BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50340.1

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg887694 jgi|Araly1|887694|Al_scaffold_0851_1                       475    1e-133


> Ahg887694 jgi|Araly1|887694|Al_scaffold_0851_1
Length=441

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 375/431 (87%), Gaps = 11/431 (3%)
 Strand=Plus/Plus

Query  7    GTCAATACGTCATTTTGCTATGAGTTCATGAAATCA-ATCCCTCAAATTGCAACATTGGA  65
            |||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct  4    GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCATA-CCCTCAAATTGCAACAATGGA  62

Query  66   TATTTATGATCTCACCAAATTTCTGATCAATTACGATTTTCAAATAACATTAGATTTGAC  125
            ||||| ||||||| |||||||| |||||||||| |||||||||| ||| |||||| ||| 
Sbjct  63   TATTTCTGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAAAACCTTAGATCTGAT  122

Query  126  GAAGCATTTCCAGTCACTCACAAACAACACAACAGATCGCAGTTCTAAAGATTCCTATAA  185
            |||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||
Sbjct  123  GAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCGCAGTTCTAAGGAATCCTATAA  182

Query  186  GTTATGTTTAGATCTTTTTAGTCTTATTGATCC----GCTTGAAACCGCTCTTAAAGCTT  241
            | |||||| ||| |||||||| |||  | ||||    ||||||  |  ||||||||||||
Sbjct  183  GATATGTTCAGAGCTTTTTAGCCTTGGT-ATCCATTTGCTTGAGTCTTCTCTTAAAGCTT  241

Query  242  TAGCAGCCAATGACTATGACACTTTAAACACGAACGTTGGTGTTATGTCT-CAATATGCA  300
            | ||| |||||||||||||||| ||| ||| ||||||| ||| ||||||| |  ||||| 
Sbjct  242  TGGCAACCAATGACTATGACACCTTAGACAGGAACGTTAGTGATATGTCTGCC-TATGCG  300

Query  301  GAGGAATGTGGAAGCGAGCTGTCAAGTATCATCAAGCCTATTTCAAAACT-TTCGAAAGG  359
            ||||||||||||||||||||||||||| |||||||||||||| || | || ||  |||||
Sbjct  301  GAGGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCACAGCTCTTA-AAAGG  359

Query  360  GGTTTCTATTGTCGAAAATGTATCTGACATTGTTCTTGTAATTTCGGAATATTTTTTAAG  419
            ||||||||||||||||||||||  | |||||||||||||||||| ||||| |||| ||||
Sbjct  360  GGTTTCTATTGTCGAAAATGTAGGTCACATTGTTCTTGTAATTTTGGAATGTTTTCTAAG  419

Query  420  aaaaaaaaaaa  430
            |||| ||||||
Sbjct  420  AAAAGAAAAAA  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17170015050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5