BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50350.1

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474162 jgi|Araly1|474162|fgenesh2_kg.1__4116__AT1G50350.1         577    2e-164


> Ahg474162 jgi|Araly1|474162|fgenesh2_kg.1__4116__AT1G50350.1
Length=405

 Score =  577 bits (312),  Expect = 2e-164
 Identities = 375/405 (93%), Gaps = 6/405 (1%)
 Strand=Plus/Plus

Query  1    ATGACCTCCGGCGGAAACTCAATCGAACCCTCCGTCGT---GGCAGAGGCGGAGAAGATG  57
            ||||| ||||||||||||||||||||| ||||||||||   ||| | |||||| ||||||
Sbjct  1    ATGACTTCCGGCGGAAACTCAATCGAATCCTCCGTCGTGGCGGCGGCGGCGGATAAGATG  60

Query  58   TTATTTTGTTACCAATACGATCAGACCATCACAATCTCTATTACTTCCTCCGCTGATCC-  116
            || || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  61   TTCTTCTGCTACCAATGCGATCAGACGATCACAATCTCTATTACTTCCTCCGCTGATCCT  120

Query  117  --TTGTCCTCTTTGCAACGGAGGTTTTCTGGACGAATACGTTGACCCTAACCCTAATCCA  174
              ||| ||||||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct  121  TTTTGCCCTCTTTGCAACGGAGGTTTTCTCGAAGAATACGTAGATCCTAACCCTAATCCA  180

Query  175  ATCCCCAATCTAATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCTCATTCATCCCA  234
            ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  181  ATCCCCAATCTGATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCCCCTTCATCCCA  240

Query  235  GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG  300

Query  295  CAACAGCTTAATGCTTTTGATCCGAATCAACTCTCGGATCAAGCTAATCCGTTAGCGGGG  354
            ||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||| 
Sbjct  301  CAACAGCCTGATGCTTTTGATCAGAATCAACTCTCGGATCAAGCTAATCCGTTACCGGGA  360

Query  355  AATCACGGAGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT  399
            |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  361  AATCACGGGGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14422812642


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5