BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50350.1 Length=402 Score E Sequences producing significant alignments: (Bits) Value Ahg474162 jgi|Araly1|474162|fgenesh2_kg.1__4116__AT1G50350.1 577 2e-164 > Ahg474162 jgi|Araly1|474162|fgenesh2_kg.1__4116__AT1G50350.1 Length=405 Score = 577 bits (312), Expect = 2e-164 Identities = 375/405 (93%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 1 ATGACCTCCGGCGGAAACTCAATCGAACCCTCCGTCGT---GGCAGAGGCGGAGAAGATG 57 ||||| ||||||||||||||||||||| |||||||||| ||| | |||||| |||||| Sbjct 1 ATGACTTCCGGCGGAAACTCAATCGAATCCTCCGTCGTGGCGGCGGCGGCGGATAAGATG 60 Query 58 TTATTTTGTTACCAATACGATCAGACCATCACAATCTCTATTACTTCCTCCGCTGATCC- 116 || || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 TTCTTCTGCTACCAATGCGATCAGACGATCACAATCTCTATTACTTCCTCCGCTGATCCT 120 Query 117 --TTGTCCTCTTTGCAACGGAGGTTTTCTGGACGAATACGTTGACCCTAACCCTAATCCA 174 ||| ||||||||||||||||||||||| || |||||||| || ||||||||||||||| Sbjct 121 TTTTGCCCTCTTTGCAACGGAGGTTTTCTCGAAGAATACGTAGATCCTAACCCTAATCCA 180 Query 175 ATCCCCAATCTAATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCTCATTCATCCCA 234 ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 181 ATCCCCAATCTGATTCTCCCGATGTCGGATCCAATCTCATCTCGCTTCCCCTTCATCCCA 240 Query 235 GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTCATGGACTTCACGAATCCGAGTTTCTTAGGTGAATCAATGGAGCCACAGTCTACTCAG 300 Query 295 CAACAGCTTAATGCTTTTGATCCGAATCAACTCTCGGATCAAGCTAATCCGTTAGCGGGG 354 ||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 301 CAACAGCCTGATGCTTTTGATCAGAATCAACTCTCGGATCAAGCTAATCCGTTACCGGGA 360 Query 355 AATCACGGAGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT 399 |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 AATCACGGGGATTACTTCTTTGGTCGTGGTCTTGAGGATCTGATT 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14422812642 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5