BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50360.1
Length=4149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474163 jgi|Araly1|474163|fgenesh2_kg.1__4117__AT1G50360.1 6106 0.0
Ahg479514 jgi|Araly1|479514|fgenesh2_kg.3__2215__AT3G19960.1 3535 0.0
> Ahg474163 jgi|Araly1|474163|fgenesh2_kg.1__4117__AT1G50360.1
Length=3959
Score = 6106 bits (3306), Expect = 0.0
Identities = 3668/3842 (95%), Gaps = 28/3842 (1%)
Strand=Plus/Plus
Query 106 tccatttttctgatctttctctccaattttATCAGTCGCCATTTGTTACTGTTAAACCCC 165
||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 53 TCCTTTTTTCCGATC-TTCTCTCCAATTTTATCAGTCGCCA-TTGTTACTGTTAAACCCC 110
Query 166 AACTGTTATATCTCTTT-TTCTTCTTCCAAAACATGTTTTAAT-TAAT-CTATATTCTTT 222
||||||||||| ||||| || |||||||| || || | | || || | || |||| |||
Sbjct 111 AACTGTTATATATCTTTCTTTTTCTTCCACAATAT-ATAT-ATATATTCCT-TATTTTTT 167
Query 223 TCATTGTTTGTTTCCTGAG------TTTTACATTCAGGATCACCGAATTTATTCAGAGAT 276
||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 168 TCA----TTGTTTCCTGAGTTTTTTTTTTACATTCAGGATCACCGAATTTATTCACAGAT 223
Query 277 TGCCATTCTTTTGTGTGTATGATTGAGATCGATCTCATCGGCGAATTCAATTTTGTATGA 336
|| | ||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 224 TGTGA--ATTTTGTGTGTATGATTGAGATCGATCTCATCGGGGAATTCAATTTCATACGA 281
Query 337 ATCTGAAGTTTCTCCAATAAAGTGGGTTTCTGATTGGCGGGGTTTCTCCttttttttGAG 396
|||||| |||||||| || ||| ||||||||| |||| |||||| | || ||||||||
Sbjct 282 TTCTGAAATTTCTCCATTACAGTTGGTTTCTGACTGGC-GGGTTT-T-CTCATTTTTGAG 338
Query 397 TTTCTAA----AATTTGAAAGGAAAATGGCACACAAGGTTAAGGCATCTTTTCAGTCACT 452
||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 339 TTTCTAAGTTTTATTTGAAAGGAAAATGTCACACAAGGTTAAGCCATCTATTCAGTCACT 398
Query 453 TAAAACGATGCCGGCTGACTATAGATTTCTTGGTTCACCAATCTCTGATCACCTTGAGAC 512
|||| ||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 399 TAAATCGATGCCCGCTGACTATAGATTTCTTGGTTCACCAATCTCTGGTCCCCCTGAGAC 458
Query 513 CAATTTGATTACTCCACCAAATGGTCACTTAAAGAATGGGGTTAATGGCACTGCAAGTTC 572
||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 459 CAATTTGATTATTCCACCAAATGGTCACTTAAAGAATGGGGTCAATGGCACTGAAAGTTC 518
Query 573 TGTTGGTGGAATGGATAGTGTTAATGAGGATTCACCTTATAGTGTCCGCAGCATTTTAAA 632
|||||||||||||||||||| ||||||||||||||| ||||| || |||||||||| |||
Sbjct 519 TGTTGGTGGAATGGATAGTGCTAATGAGGATTCACCGTATAGCGTGCGCAGCATTTCAAA 578
Query 633 TGGAGAGCGGTCTTCAATTGGTGATGGAGATTCTATTTTGCCCTTGCCTGAGAGTAATGA 692
||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 579 TGGAGTGCGGTCTTCAATTAGTGATGGAGATTCTAATTTGCCCTTGCCTCAGAGTAATGA 638
Query 693 TCGCAAGTGGAGCGACACAAATGTATATGCTCGGAAAAAGGTACTGCAATTTTGGGTCCA 752
||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 639 TCGCAGGTGGAGCGATACAAGTGCATATGCTCGGAAAAAGGTACTGCAATTTTGGGTCCA 698
Query 753 ACTTCCAAACGGTAACTGGGAGCTGGGAAAGATAATGTCAACTTCAGGAGAAGAGTCTGT 812
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 699 ACTTCCAAACGGTAACTGGGAGCTGGGGAAGATAGTGTCAACTTCAGGAGAAGAGTCTGT 758
Query 813 TATCGTGGTAACTGAGGGAAAAGTTTTAAAAGTCAAATCAGAGACTTTAGTACCTGCAAA 872
||| |||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 759 TATTGTGGTACCTGAGGGAAAAGTTTTAAAAGTCAGATCAGAGACGTTAGTACCGGCAAA 818
Query 873 TCCTGATATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TCCTGATATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGC 878
Query 933 AGTGTTGTACAACCTTGAGTATAGGTACAACCAGGACATGATATATACAAAAGCAGGGCC 992
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 879 AGTGTTGTACAACCTTGAGTATAGGTACAACCAGGACATGATATATACAAAAGCGGGGCC 938
Query 993 GGTTCTGGTGGCTGTGAATCCCTTCAAGGAGGTTCCTTTGTACGGTAATCGCAACATTGA 1052
|| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 939 TGTACTGGTGGCTGTGAATCCCTTCAAGGAGGTTCCTTTGTATGGAAATCGCAATATTGA 998
Query 1053 AGCATACAGGAAGAGATCAAATGAGAGCCCTCATGTCTATGCTATTGCAGATACAGCAAT 1112
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 999 AGCATACAGGAAGAGATCAAATGAGAGCCCTCATGTCTATGCCATTGCAGATACAGCAAT 1058
Query 1113 ACGTGAAATGATACGAGATGAAGTTAACCAATCAATCATTATCAGTGGAGAGAGTGGAGC 1172
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1059 ACGTGAAATGATACGAGATGAAGTTAACCAATCAATCATTATCAGCGGAGAGAGTGGAGC 1118
Query 1173 AGGAAAGACTGAGACAGCAAAGATAGCGATGCAATACTTGGCTGCTCTTGGAGGTGGAAG 1232
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1119 AGGAAAAACTGAGACAGCAAAGATAGCAATGCAATACTTGGCTGCTCTTGGAGGTGGAAG 1178
Query 1233 TGGGATCGAGTATGAGATACTAAAGACTAATCCCATCTTGGAAGCATTTGGAAATGCAAA 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 TGGGATCGAGTATGAGATACTAAAGACTAATCCCATCTTGGAAGCATTTGGAAATGCAAA 1238
Query 1293 AACATTGAGAAACGATAATTCTAGTCGTTTTGGTAAGTTGATAGAAATTCATTTTAGTGA 1352
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1239 AACATTGAGAAACGATAATTCTAGTCGTTTTGGTAAGTTGATAGAGATTCATTTTAGTGA 1298
Query 1353 AACAGGGAAGATTTCGGGTGCTCAAATTCAAACATTTTTACTAGAAAAGTCAAGAGTGGT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 AACAGGGAAGATTTCGGGTGCTCAAATTCAAACATTTTTACTAGAAAAGTCAAGAGTGGT 1358
Query 1413 TCAATGTACGGAAGGAGAAAGGTCATATCATATATTCTATCAACTTTGTGCTGGGGCTTC 1472
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1359 TCAATGTACGGAAGGAGAAAGGTCATATCATATCTTTTATCAACTGTGTGCTGGGGCTTC 1418
Query 1473 ACCTACACTTAGAGAGAAGTTAAATTTGACAAGTGCAAAACAGTATAACTATTTGAAACA 1532
||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 1419 ACCTACACTTAGAGAGAAGCTAAATTTGACAAGCGCAAAACAGTATAAATATTTGAAACA 1478
Query 1533 AAGCAATTGCTATTCAATTAACGGAGTTGATGACGCTGAACGTTTTCACGCCGTTAAGGA 1592
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1479 GAGCAATTGCTATTCAATTAACGGAGTTGATGACGCTGAACGTTTTCACACCGTGAAGGA 1538
Query 1593 AGCTTTAGATATTGTGCATGTTAGTAAAGAAGATCAAGAAAATGTATTTGCAATGCTTGC 1652
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1539 AGCTTTAGATGTTGTGCATGTTAGTAAAGAAGATCAAGAAAGTGTATTTGCAATGCTTGC 1598
Query 1653 TGCAGTATTATGGCTAGGGAATGTTTCTTTTACCATTATTGACAACGAAAATCACGTTGA 1712
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1599 TGCAGTATTATGGCTGGGGAATGTTTCCTTTACCATTATTGACAACGAAAATCACGTTGA 1658
Query 1713 ACCTGAACCAGATGAAAGTTTGTCAACTGTTGCTAAATTGATTGGGTGCAACATCAATGA 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 ACCTGAACCAGATGAAAGTTTGTCAACTGTTGCTAAATTGATTGGGTGCAACATCAATGA 1718
Query 1773 GCTTAAGCTAGCTCTATCAAAGCGTAATATGAGAGTTAATAATGATACTATTGTACAGAA 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GCTTAAGCTAGCTCTATCAAAGCGTAATATGAGAGTTAATAATGATACTATTGTACAGAA 1778
Query 1833 GCTAACACTATCGCAGGCCATTGACGCAAGAGATGCTTTAGCAAAGTCAATCTATGCCTG 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 GCTAACACTATCGCAGGCCATTGACGCAAGAGATGCTTTAGCAAAGTCAATCTATGCCTG 1838
Query 1893 CCTATTTGACTGGCTAGTTGAACAGATTAACAAATCTCTTGCGGTGGGAAAGAGGAGAAC 1952
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1839 CCTATTCGACTGGCTGGTTGAACAGATAAACAAATCTCTTGCGGTGGGAAAGAGGAGAAC 1898
Query 1953 TGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTCAATAAAAATAGTTT 2012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTCAATAAAAATAGTTT 1958
Query 2013 TGAGCAGTTCTGTATAAATTATGCAAATGAGAGATTGCAGCAACACTTCAACCGTCATCT 2072
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1959 TGAGCAGTTCTGTATAAATTATGCAAATGAGAGATTGCAGCAACACTTCAATCGTCATCT 2018
Query 2073 CTTCAAGCTTGAGCAGGAGGAATATATTCAGGATGGCATTGACTGGACAAGGGTTGATTT 2132
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2019 CTTCAAGCTTGAGCAGGAGGAATATATACAGGATGGCATTGACTGGACAAGGGTTGATTT 2078
Query 2133 TGAGGACAACCAAGAATGTCTTAGTCTCTTTGAAAAGAAACCATTAGGGCTGCTTTCTCT 2192
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2079 TGAGGACAACCAAGATTGTCTCAGTCTCTTTGAAAAGAAACCATTAGGCCTGCTTTCTCT 2138
Query 2193 TCTGGATGAGGAATCCACATTTCCAAATGGCACAGATTTGACACTTGCCAACAAGCTTAA 2252
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 TCTGGATGAAGAATCCACATTTCCAAATGGCACAGATTTGACACTTGCCAACAAGCTTAA 2198
Query 2253 ACAACATCTAAATGATAATTCCTGTTTTAGAGGAGATCGGGGGAAGGCTTTCACAGTTGC 2312
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2199 ACAACATCTAAATGATAATTCCTGTTTTAGAGGAGATCGGGGGAAGGTTTTCACAGTTGC 2258
Query 2313 GCATTATGCTGGAGAGGTTACATATGAGACGACTGGATTTCTAGAGAAGAACCGAGATTT 2372
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2259 ACATTATGCTGGAGAGGTTACATATGAGACCACTGGATTTCTAGAGAAGAACCGAGATTT 2318
Query 2373 GTTGCATTCAGATTCTATTCAACTTTTGTCGTCTTGCTCTTGCCACCTCCCTCAGGCGTT 2432
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2319 GTTGCATTCGGATTCTATTCAACTTTTGTCATCTTGCTCTTGCCACCTTCCTCAGGCGTT 2378
Query 2433 TGCTTCTAGTATGCTCATTTATTCTGAAAAACCTCTTGTCGGTCCTTTACACAAAGCAGG 2492
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 2379 TGCTTCTAGTATGCTCATTCATTCTGAAAAACCTGTTTTCGGTCCTTTACACAAAGCAGG 2438
Query 2493 TGGAGCTGATTCCCAGCGACTGAGTGTAGCAACTAAATTTAAGGGTCAACTTTTCCAATT 2552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 TGGAGCTGATTCCCAGCGACTGAGTGTAGCAACTAAATTTAAGGGTCAACTTTTCCAATT 2498
Query 2553 GATGCAACGTCTAGGGAACACTACCCCACATTTTATTCGCTGCATAAAGCCAAACAATGT 2612
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2499 GATGCAACGTCTAGGGAATACTACCCCACATTTCATTCGCTGCATAAAGCCAAACAATGT 2558
Query 2613 TCAGTCTGCCGGGTTGTATGAGCAAGGACTTGTCTTACAGCAGCTAAGATGTTGTGGTGT 2672
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2559 TCAGTCTCCCGGGTTGTATGAGCAAGGGCTTGTCTTACAGCAGCTAAGATGTTGTGGGGT 2618
Query 2673 CCTAGAGGTCGTTCGAATATCCCGGTCTGGATTTCCCACGAGAATGTTTCATCATAAATT 2732
||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2619 CCTAGAGGTGGTTCGAATATCCCGGTCTGGATTTCCCACAAGAATGTCTCATCATAAATT 2678
Query 2733 TGCCCGAAGGTATGGTTTCCTTCTGCTGGAGAACATTGCAGCAAAAGATCCTCTAAGTGT 2792
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2679 TGCCCGAAGGTATGGTTTCCTTCTGCTGGAGAACATTGCAGCAAAAGATCCACTAAGTGT 2738
Query 2793 TTCGGTTGCAATTCTCCATCAGTTTAATATCTTGCCAGAGATGTACCAAGTTGGCTACAC 2852
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2739 TTCGGTTGCGATTCTCCATCAGTTTAATATCTTGCCGGAGATGTACCAAGTTGGCTACAC 2798
Query 2853 AAAATTGTTTTTCAGAACTGGCCAGATTGGGGTTCTTGAAGATACAAGGAATCGCACTCT 2912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2799 AAAATTGTTTTTCAGAACTGGCCAGATTGGGGTTCTTGAAGATACAAGGAATCGCACTCT 2858
Query 2913 GCATGGCATTTTACGTCTTCAAAGTTATTTTAGAGGGCACCAAGCTCGCTGTCGTCTAAA 2972
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2859 GCATGGCATTTTACGTCTTCAAAGTTATTTTAGAGGGCACCAAGCACGCTGTCGTCTAAA 2918
Query 2973 AGAGCTTAAAACCGGAATTACTATTCTTCAATCATTTGTTCGTGGAGAAAAGATGAGAAA 3032
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 2919 AGAGCTTAAAAGAGGAATTACTGTTCTTCAATCATTTGTTCGTGGAAAAAAGATAAGAAA 2978
Query 3033 GGAATACACGGAGTTACTGCAGAGGCATCGAGCTTCTGCTGCTATACAAAGCCATGTTAA 3092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2979 GGAATACACGGAGTTACTGCAGAGGCATCGAGCTTCTGCTGCTATACAAAGCCATGTTAA 3038
Query 3093 GAGAAGGATTGCTAGCCAACAGTATAAAGCCACAGTTGATGCATCTGCTGTAATACAATC 3152
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3039 GAGAAGGATTGCTAGCCGACAGTATAAAGCCACAGTTGATGCATCTGTTGTAATACAATC 3098
Query 3153 AGCAATTCGTGGAGAGCTGGTTAGAAGATGTGCGGGGGATATTGGATGGCTTAGTTCTGG 3212
||||||||| || ||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 3099 AGCAATTCGCGGCGAGCTGGTTAGAAGATGCGCGGGGGATATTGGATGGCTAAATTCTGG 3158
Query 3213 TGGCACCAAGAGAAATGAGTCAGACGAGGTGCTAGTGAAGGCATCATATCTTTCCGATCT 3272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3159 TGGCACCAAGAGAAATGAGTCAGACGAGGTGCTAGTGAAGGCATCATATCTTTCCGAACT 3218
Query 3273 TCAGCGTAGGGTTCTTAGAACCGAAGCTGCTCTTCGTGAGAAAGAAGAGGAGAACGACAT 3332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3219 TCAGCGTAGGGTTCTTAGAACCGAAGCTGCTCTTCGTGAGAAAGAAGAGGAGAACGACAT 3278
Query 3333 CCTCCGACAAAGAGTCCAGCAGTACGATAACCGGTGGTCTGAATATGAAACAAAGATGAA 3392
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3279 CCTCCGACAAAGACTCCAGCAGTACGATAACCGGTGGTCTGAATATGAAACAAAGATGAA 3338
Query 3393 ATCCATGGAAGAAATTTGGCAAAAGCAGATGAAATCTTTGCAATCCAGTCTTTCCATCGC 3452
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 3339 ATCCATGGAAGAAATTTGGCAAAGGCAGATGAAATCTTTGCAATCCAGTCTTTCCATTGC 3398
Query 3453 AAAGAAAAGCCTAGAGGTTGAGGACTCAGCGAGAAACTCGGATGCATCGGTGAATGCAAG 3512
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 3399 AAAGAAAAGCCTAGAGGTTGACGACTCGGCGAGAAACTCGGATGCATCGGTGAATGCAAG 3458
Query 3513 CGATGCAACAGATTTAGATTCAGGAGGTAGTCATTACCAAATGGGCCATGGCAGGTCAAG 3572
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3459 TGATGCAACGGATTTAGATTCAGGAGGTAGTCATTACCAAATGGGCCATGGCAGGTCAAG 3518
Query 3573 AAGTGTAGGCGTGGGTTTAAGCGTGATAAGCCGGTTAGCTGAGGAATTTGGACAAAGAGC 3632
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3519 AAGTGTAGGTGTGGGTTTAAGCGTGATAAGCCGGTTAGCTGAGGAATTCGGACAAAGAGC 3578
Query 3633 TCAGGTATTTGGTGACGACAGAAAGTTCTTGATGGAAGTGAAATCTGGTCAGGTGGAAGC 3692
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3579 TCAGGTGTTTGGTGACGACAGAAAGTTCTTGATGGAGGTGAAATCTGGTCAGGTGGAAGC 3638
Query 3693 AAACTTGAATCCGGACCGGGAGCTACGAAGGCTGAAACAGATGTTTGAGACATGGAAGAA 3752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3639 AAACTTGAATCCGGACCGGGAGCTACGAAGGCTGAAACAGATGTTTGAGACATGGAAGAA 3698
Query 3753 AGATTATGGAGGGAGACTAAGGGAAACGAAACTGATACTTAGCAAACTTGGGAGTGAAGA 3812
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3699 GGATTATGGAGGGAGACTAAGGGAAACGAAACTGATACTAAGCAAACTTGGGAGTGAAGA 3758
Query 3813 AACAGGTGGTTCAGCGGAGAAGGTGAAGATGAATTGGTGGGGGAGGTTGAGGAGTACTAG 3872
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 3759 AACAGGTGGTTCAGCGGAGAAGGTGAAGATGAAGTGGTGGGGGAGGTTGAAGAGTACTAG 3818
Query 3873 GTATTAATGGTTACTTCCTTTTCTTGAGACGCACGTCTCCTTTTCT-ACACGTTTGATGT 3931
|| ||| ||||| |||||||| ||||||||||||||||| |||| | |||||||||||||
Sbjct 3819 GTTTTAGTGGTTTCTTCCTTTCCTTGAGACGCACGTCTCTTTTTTTTACACGTTTGATGT 3878
Query 3932 AA 3933
||
Sbjct 3879 AA 3880
> Ahg479514 jgi|Araly1|479514|fgenesh2_kg.3__2215__AT3G19960.1
Length=4035
Score = 3535 bits (1914), Expect = 0.0
Identities = 2801/3228 (87%), Gaps = 65/3228 (2%)
Strand=Plus/Plus
Query 671 TGCCCTTGCCTGAGAGTAATGATCGCAAGTGGAGCGACACAAATGTATATGCTCGGAAA- 729
||||||||||| ||||| |||| |||| |||||||||||| | || |||||| | ||||
Sbjct 587 TGCCCTTGCCTCAGAGTGATGAACGCAGGTGGAGCGACACTAGTGCATATGC-CCGAAAG 645
Query 730 AAGGTACTGCAATTTTGGGTCCAACTTCCAAACGGTAACTGGGAGC-TGGGAAAGATAAT 788
||| ||||||||| |||| | ||||||||||| ||||||||||||| |||| |||||| |
Sbjct 646 AAGATACTGCAATCTTGGATTCAACTTCCAAATGGTAACTGGGAGCTTGGG-AAGATATT 704
Query 789 GTCAACTTCAGGAGAAGAGTCTG-T-TATCGTGGTAACTGAGGGAAAAGTTTTAAAAGTC 846
||||| ||||||||| ||||||| | |||| | | | |||||||||||| ||||||||
Sbjct 705 GTCAATTTCAGGAGATGAGTCTGTTATATC-T-TTGCCAGAGGGAAAAGTTATAAAAGTC 762
Query 847 AAATCAGAGACTTTAGTACCTGCAAATCCTGATATTCTTGATGGAGTAGACGATCTCATG 906
| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 763 ATATCAGAGACTCTAGTACCTGCAAATCCTGATATTCTTGATGGAGTGGACGATCTTATG 822
Query 907 CAACTAAGTTATTTAAATGAGCCAGCAGTGTTGTACAACCTTGAGTATAGGTACAACCAG 966
|| || ||||| |||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 823 CAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAA 882
Query 967 GACATGATATATACAAAAGCAGGGCCGGTTCTGGTGGCTGTGAATCCCTTCAAGGAGGTT 1026
|||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||
Sbjct 883 GACATGATATATACAAAAGCAGGGCCAGTTTTGGTGGCTGTGAATCCTTTCAAGGAAGTT 942
Query 1027 CCTTTGTACGGTAATCGCAACATTGAAGCATACAGGAAGAGATCAAATGAGAGCCCTCAT 1086
||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 943 CCTTTATACGGAAATCGCTACATTGAAGCATACAGGAAGAGATCAAATGAGAGTCCTCAT 1002
Query 1087 GTCTATGCTATTGCAGATACAGCAATACGTGAAATGATACGAGATGAAGTTAACCAATCA 1146
|| ||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1003 GTGTATGCAATTGCAGATACAGCAATTCGCGAAATGATACGCGATGAAGTTAACCAATCT 1062
Query 1147 ATCATTATCAGTGGAGAGAGTGGAGCA-GGAAAGACTGAGACAGCAAAGATAGCGATGCA 1205
||||||||||| || |||||||||||| ||||| |||||||| || |||||||| |||||
Sbjct 1063 ATCATTATCAGCGGCGAGAGTGGAGCAGGGAAA-ACTGAGACGGCTAAGATAGCTATGCA 1121
Query 1206 ATACTTGGCTGCTCTTGGAGGTGGAAGTGGGATCGAGTATGAGATACTAAAGACTAATCC 1265
||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 1122 ATACTTGGCTGCTCTTGGAGGTGGAAGCGGGATCGAATATGAAATACTTAAGACTAATCC 1181
Query 1266 CATCTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAACGATAATTCTAGTCGTTTTGG 1325
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1182 CATTTTGGAAGCATTTGGAAATGCAAAAACATTGAGAAATGATAACTCTAGTCGTTTTGG 1241
Query 1326 TAAGTTGATAGAAATTCATTTTAGTGAAACAGGGAAGATTTCGGGTGCTCAAATTCAAAC 1385
||| | ||||| |||||||||||||||| || ||||| |||||||| |||||||||||
Sbjct 1242 GAAGCTAATAGAGATTCATTTTAGTGAAAGTGGAAAGATATCGGGTGCGCAAATTCAAAC 1301
Query 1386 ATTTTTACTAGAAAAGTCAAGAGTGGTTCAATGTACGGAAGGAGAAAGGTCATATCATAT 1445
||||||||||||||||| |||||||| ||||| | ||||| |||||||||||||||||
Sbjct 1302 CTTTTTACTAGAAAAGTCTAGAGTGGTCCAATGCGCTGAAGGGGAAAGGTCATATCATAT 1361
Query 1446 ATTCTATCAACTTTGTGCTGGGGCTTCACCTACACTTAGAGAGAAGTTAAATTTGACAAG 1505
||| |||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1362 ATTTTATCAACTTTGTGCCGGGGCTTCACCTGCACTTAGAGAGAAGCTAAATCTGACAAG 1421
Query 1506 TGCAAAACAGTATAACTATTTGAAACAAAGCAATTGCTATTCAATTAACGGAGTTGATGA 1565
||| | ||||||| |||||| ||| || ||||| |||||||||||||||||||| ||
Sbjct 1422 CGCAGATGAGTATAAATATTTGGGACAGAGTAATTGTTATTCAATTAACGGAGTTGACGA 1481
Query 1566 CGCTGAACGTTTTCACGCCGTTAAGGAAGCTTTAGATATTGTGCATGTTAGTAAAGAAGA 1625
||||||||||||||| | |||||||||||| | || |||||||||||||||||||||||
Sbjct 1482 TGCTGAACGTTTTCACACTGTTAAGGAAGCTCTGGACATTGTGCATGTTAGTAAAGAAGA 1541
Query 1626 TCAAGAAAATGTATTTGCAATGCTTGCTGCAGTATTATGGCTAGGG-AATGTTTCTTTTA 1684
|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |
Sbjct 1542 TCAAGAAAGTGTATTTGCAATGCTTGCTGCAGTATTATGGCT-GGGAAATGTTTCTTTCA 1600
Query 1685 CCATTATTGACAACGAAAATCACGTTGAACCTGAACCAGATGAAAGTTTGTCAACTGTTG 1744
|| |||||||||| ||||| || |||||||| | | ||||||||||||||||||||||||
Sbjct 1601 CCGTTATTGACAATGAAAACCATGTTGAACCAGTAGCAGATGAAAGTTTGTCAACTGTTG 1660
Query 1745 CTAAATTGATTGGGTGCAACATCAATGAGCTTAAGCTAGCTCTATCAAAGCGTAATATGA 1804
|||| ||||||||||||| |||||||||||||| |||| || ||||||| ||||| ||||
Sbjct 1661 CTAACTTGATTGGGTGCACCATCAATGAGCTTACGCTAACTTTATCAAAACGTAACATGA 1720
Query 1805 GAGTTAATAATGATACTATTGTACAGAAGCTAACACTATCGCAGGCCATTGACGCAAGAG 1864
|||||| |||||||| ||||||||||||||||| ||| | ||||||||||| |||||||
Sbjct 1721 GAGTTAGGAATGATACCATTGTACAGAAGCTAACGCTACCTCAGGCCATTGATGCAAGAG 1780
Query 1865 ATGCTTTAGCAAAGTCAATCTA-TGCCTGCCTATTTGACTGGCTAGTTGAACAGATTAAC 1923
||||||||||||| |||||||| | | ||||| ||||||||||| ||||||||||| ||
Sbjct 1781 ATGCTTTAGCAAAATCAATCTACT-CGTGCCTGTTTGACTGGCTGGTTGAACAGATCAAT 1839
Query 1924 AAATCTCTTGCGGTGGGAAAGAGGAGAACTGGCAGATCCATCAGCATTCTTGATATCTAT 1983
||||||||| | |||||||||||| |||| |||||||| ||||| ||||||||||||||
Sbjct 1840 AAATCTCTTTCTGTGGGAAAGAGGCGAACCGGCAGATCTATCAGTATTCTTGATATCTAC 1899
Query 1984 GGCTTTGAATCATTCAATAAAAATAGTTTTGAGCAGTTCTGTATAAATTATGCAAATGAG 2043
|| ||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1900 GGATTTGAATCATTTGATAAAAATAGCTTCGAGCAGTTCTGCATAAATTATGCAAATGAG 1959
Query 2044 AGATTGCAGCAACACTTCAACCGTCATCTCTTCAAGCTTGAGCAGGAGGAATATATTCAG 2103
||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||
Sbjct 1960 AGATTGCAGCAACACTTTAACCGTCATCTATTCAAGCTGGAGCAAGAGGAATATATCCAG 2019
Query 2104 GATGGCATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAGAATGTCTTAGTCTCTTT 2163
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2020 GATGGTATTGACTGGACAAGGGTTGATTTTGAGGACAACCAAGATTGTCTTAGTCTCTTT 2079
Query 2164 GAAAAGAAACCATTAGGGCTGCTTTCTCTTCTGGATGAGGAATCCACATTTCCAAATGGC 2223
|||||||||||||| |||||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct 2080 GAAAAGAAACCATTGGGGCTGCTCTCTCTTTTGGATGAGGAATCTACATTTCCGAATGGC 2139
Query 2224 ACAGATTTGACACTTGCCAACAAGCTTAAACAACATCTAAA-TGATAATTCCTGTTTTAG 2282
||||||||||||||||| |||||||| ||||| |||||| | | |||||| ||||| ||
Sbjct 2140 ACAGATTTGACACTTGCAAACAAGCTAAAACAGCATCTACACTC-TAATTCATGTTTCAG 2198
Query 2283 AGGAGATCGGGGGAAGGCTTT-CACAGTTGCGCATTATGCTGGAGAGGTTACATATGAGA 2341
||||||| |||||| |||| |||||||| ||||||||| |||||||||||||| ||||
Sbjct 2199 AGGAGATAAAGGGAAG-CTTTTCACAGTTGTGCATTATGCAGGAGAGGTTACATACGAGA 2257
Query 2342 CGACTGGATTTCTAGAGAAGAACCGAGATTTGTTGCATTCAGATTCTATTCAACTTTTGT 2401
| ||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||
Sbjct 2258 CAACTGGTTTTCTAGAGAAGAATAGAGACTTGTTGCATTCGGATTCTATTCAACTTTTGT 2317
Query 2402 CGTCTTGCTCTTGCCACCTCCCTCAGGCGTTTGCTTCTAGTATGCTCATTTATTCTGAAA 2461
| ||||| ||||||| ||| ||||| || ||||||||||| ||||| ||| | |||||||
Sbjct 2318 CCTCTTGTTCTTGCCTCCTTCCTCAAGCATTTGCTTCTAGCATGCTGATTCAATCTGAAA 2377
Query 2462 AACCTCTTGTCGGTCCTTTACACAAAGCAGGTGGAGCTGATTCCCAGCGACTGAGTGTAG 2521
||||| |||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 2378 AACCTGTTGTCGGTCCTTTATACAAAGCAGGTGGTGCTGATTCCCAGCGGTTGAGTGTAG 2437
Query 2522 CAACTAAATTTAAGGGTCAACTTTTCCAATTGATGCAACGTCTAGGGAACACTACCCCAC 2581
| |||||||||||| ||||||| |||||||||||||||||| |||| |||||||||||||
Sbjct 2438 CTACTAAATTTAAGAGTCAACTCTTCCAATTGATGCAACGTTTAGGAAACACTACCCCAC 2497
Query 2582 ATTTTATTCGCTGCATAAAGCCAAACAATGTTCAGTCTGCC-GGGTTGTATGAGCAAGGA 2640
|||| || ||||| || |||||||| || ||||||| || ||| |||||||||||||
Sbjct 2498 ATTTCATCCGCTGTATCAAGCCAAATAACATTCAGTCC-CCTGGGGTGTATGAGCAAGGG 2556
Query 2641 CTTGTCTTACAGCAGCTAAGATGTTGTGGTGTCCTAGAGGTCGTTCGAATATCCCGGTCT 2700
||||| ||||||||||||||||||||||| |||||||| || |||||||| || ||||||
Sbjct 2557 CTTGTTTTACAGCAGCTAAGATGTTGTGGGGTCCTAGAAGTGGTTCGAATTTCACGGTCT 2616
Query 2701 GGATTTCCCACGAGAATGTTTCATCATAAATTTGCCCGAAGGTATGGTTTCCTTCTGCTG 2760
|||||||| || ||||||| |||||| |||||| |||||||||||||||| |||||| ||
Sbjct 2617 GGATTTCCTACAAGAATGTCTCATCAGAAATTTTCCCGAAGGTATGGTTTTCTTCTGGTG 2676
Query 2761 GAGAACATTGCAGCA-AAAGATCCTCTAAGTGTTTCGGTTGCAATTCTCCATCAGTTTAA 2819
||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2677 GAGAACATTGCTG-ATAAAGATCCTCTAAGTGTTTCAGTTGCAATTCTCCATCAGTTTAA 2735
Query 2820 TATCTTGCCAGAGATGTACCAAGTTGGCTACACAAAATTGTTTTTCAGAACTGGCCAGAT 2879
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2736 TATCTTGCCGGAGATGTATCAAGTTGGCTACACAAAGTTGTTTTTCAGAACTGGCCAGAT 2795
Query 2880 TGGGGTTCTTGAAGATACAAGGAATCGCACTCTGCATGGCATTTTACGTCTTCAAAGTTA 2939
|||||||||||| ||||||||||| || ||||| || |||||||||||| |||||||||
Sbjct 2796 TGGGGTTCTTGAGGATACAAGGAACCGTACTCTCCACGGCATTTTACGTGTTCAAAGTTC 2855
Query 2940 TTTTAGAGGGCACCAAGCTCGCTGTCGTCTAAAAGAGCTTAAAACCGGAATTACTATTCT 2999
||||||||| |||| || |||||||| || || |||||||||| |||||| |||||||
Sbjct 2856 TTTTAGAGGATACCAGGCACGCTGTCGCCTGAAGGAGCTTAAAATGGGAATTTCTATTCT 2915
Query 3000 TCAATCATTTGTTCGTGGAGAAAAGATGAGAAAGGAATACACGGAGTTACTGCAG-AGGC 3058
|| ||||||||||||||||| ||||| ||||| || | | ||||||| | || ||||
Sbjct 2916 CCAGTCATTTGTTCGTGGAGAGAAGATAAGAAAAGAGTTTGCCGAGTTACGG-AGGAGGC 2974
Query 3059 ATCGAGCTTCTGCTGCTATACAAAGCCATGTTAAGAG-AAGGATTGCTAGCCAACAGTAT 3117
|| | ||| ||||| ||||||||||||| ||||| || ||| |||||||| |||| |||
Sbjct 2975 ATAGGGCTGCTGCTACTATACAAAGCCAAGTTAAAAGCAAG-ATTGCTAGGAAACAATAT 3033
Query 3118 AAAGCCACAGTTGATGCATCTGCTGTAATACAATCAGCAATTCGTGGA-GAGCTGGTTAG 3176
|| | || || |||||||| | | | |||||||||| ||||||||| | | |||||||
Sbjct 3034 AAGGGCATAGCCGATGCATCGGTTTTGATACAATCAGTAATTCGTGGTTG-GTTGGTTAG 3092
Query 3177 AAGATG-TGCGGGGGATATTGGATGGCTTAGTTCTGGTGGCACCAAGAGAAATGAGTCAG 3235
|||||| | | ||||||||||||||||| | ||||| ||||| |||| |||||||||||
Sbjct 3093 AAGATGCT-CAGGGGATATTGGATGGCTAAAATCTGGAGGCACTAAGACAAATGAGTCAG 3151
Query 3236 ACGAGGTGCTAGTGAAGGCATCA-TATCTTTCCGATCTTCAGCGTAGGGTTCTTAGAACC 3294
|||||||||||||| |||||| || |||||||| ||||| || ||||| |||| || |
Sbjct 3152 GTGAGGTGCTAGTGAAAGCATCAGTA-CTTTCCGAGCTTCAACGCAGGGTACTTA-AAGC 3209
Query 3295 GAAG-CTGCTCTTCGTGAGAAAGAAGAGGAGAACGACATCCTCC-GACAAAGAG-TCCAG 3351
| || ||||||| ||||| |||||||| ||||||||||| || | | || || | | ||
Sbjct 3210 GGAGGCTGCTCTGCGTGAAAAAGAAGAAGAGAACGACATTCTTCAG-CAGAG-GCTTCAA 3267
Query 3352 CAGTACGATAACCGGTGGTCTGAATATGAAACAAAGATGAAATCCATGGAAGAAATTTGG 3411
||||| || ||||||||||| || || || |||||||||||||| ||||||||||| |||
Sbjct 3268 CAGTATGAGAACCGGTGGTCAGAGTACGAGACAAAGATGAAATCAATGGAAGAAATCTGG 3327
Query 3412 CAAAAGCAGATGAAATCTTTGCAATCCAGTCTTTCCATCGCAAAGAAAAGCCTAGAGGTT 3471
|||||||| |||| |||||||| |||||||| ||||| |||||||||||||||| ||||
Sbjct 3328 CAAAAGCAAATGAGGTCTTTGCAGTCCAGTCTGTCCATAGCAAAGAAAAGCCTAGCGGTT 3387
Query 3472 GAGGACTCAGCGAGAAACTCGGATGCATCGGTGAATGCAAGCGATGCAACAGATTTAGAT 3531
|||||||||||||||||||| |||||||| || ||||| || | |||||| |||| |||
Sbjct 3388 GAGGACTCAGCGAGAAACTCAGATGCATCTGTCAATGCGAGTGGTGCAACGGATTGGGAT 3447
Query 3532 TCAGG-AGGTAGTCA-TT-A----CCAAATGGGCCATGGC--AGGTCA-AGA--AGTG-- 3577
||| | || || ||| || | ||||| || | || ||| | ||| | |
Sbjct 3448 TCAAGCAG-TAATCAATTCAGGAGCCAAACAAGCAACGGAGGAGGGCCGAGACTACAGCC 3506
Query 3578 TA-G-GCGTGGGTTTAAGCGTGATAAGCCGGTTAGCTGAGGAATTTG-GACAAAGAGCTC 3634
|| | ||| ||| | ||||||||| | |||||||| || ||||| | | || |||||||
Sbjct 3507 TATGAGCGCGGGGCTGAGCGTGATAGGGCGGTTAGCAGAAGAATTCGAG-CAGAGAGCTC 3565
Query 3635 AGGTATTTGGTGACGACAG-AAAGTTCTTGATGGAAGTGAAATCTGGTCAGGTGGAAGCA 3693
| || |||||||| || | |||||||||| |||||||||||||||||||||||||||||
Sbjct 3566 AAGTGTTTGGTGATGAT-GCAAAGTTCTTGGTGGAAGTGAAATCTGGTCAGGTGGAAGCA 3624
Query 3694 AACTTGAATCCGGACCGGGAGCT-ACGAAGGCTGAAACAGATGTTTGAGACATGGAAGAA 3752
|||||||| || ||| | ||||| | || |||| ||||||||||||||||||||||| ||
Sbjct 3625 AACTTGAACCCAGACAGAGAGCTGAGGA-GGCTAAAACAGATGTTTGAGACATGGAAAAA 3683
Query 3753 AGATTATGGAGGGAGACTAAGGGAAACGAAACTGATACTTAGCAAACTTGGGAGTGAAGA 3812
|||||||||||||||||| ||||||||||||||||||| ||||| || ||||| |||||
Sbjct 3684 AGATTATGGAGGGAGACTGCGGGAAACGAAACTGATACTGAGCAAGCTCGGGAGCGAAGA 3743
Query 3813 AA-CAGGTGGTTC-AGCGGAGAAGGTGAAGATGAATTGGTGGGGGAGG 3858
| ||| ||||| | |||||| ||||||| ||| |||||||| |||
Sbjct 3744 GAGCAGC-GGTTCGAT-GGAGAAAGTGAAGAGGAAGTGGTGGGGAAGG 3789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156873315906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5