BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50370.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1 2324 0.0
Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1 1253 0.0
> Ahg474164 jgi|Araly1|474164|fgenesh2_kg.1__4118__AT1G50370.1
Length=1448
Score = 2324 bits (1258), Expect = 0.0
Identities = 1403/1468 (96%), Gaps = 29/1468 (2%)
Strand=Plus/Plus
Query 3 GATGGAGGAAGACCAAATCGGGTTCGGGTCGAGATTGTTTGGTTCGTTGTGTTTCCCCTT 62
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 GATGGAGGAAGACCAAATTGGGTTTGGGTCCAGATTGTTTGGTTCGTTGTGTTTCCCCTT 60
Query 63 tctctctc--tctcCCTCTTTCCCCCTTACGTAACCCT----AAGCGGACGGAGCAATGC 116
|||||||| ||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 61 TCTCTCTCTTTCTCCCTCTTT-CCTCTTACGTAACCCTAACGAAGCGGACGGAGCAATGC 119
Query 117 TCTGCTAGATCTAT-CTTTCTTTCAATT-CTTCACCAGAGATCGTCGAGACTCACCATTG 174
|||||||||||||| ||| | ||||||| | ||||| |||||||||| |||| ||||||
Sbjct 120 TCTGCTAGATCTATCCTTGC-TTCAATTCCCCCACCAAAGATCGTCGATACTCGCCATTG 178
Query 175 AAATCGAAGAAACAGCACCAATTTCCACTTCACCACCGAAAGAGAGAGACAGAGAGGATA 234
||||||| ||||||||||||||||| |||| |||| | | ||||||||||
Sbjct 179 AAATCGACGAAACAGCACCAATTTCTACTT---CACC--------G-CA-AGAGAGGATA 225
Query 235 ATAAAAGGCCGCCATGGATTTAGATCAATGGATTTCCAAGGTTAAAGACGGCCAACATCT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ATAAAAGGCCGCCATGGATTTAGATCAATGGATTTCCAAGGTTAAAGACGGCCAACATCT 285
Query 295 CTCTGAGGACGAGCTTCAACTTCTCTGCGAATACGTGAAAGAAATTCTTATTGAGGAATC 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTCTGAAGACGAGCTTCAACTTCTCTGCGAATACGTGAAAGAAATTCTTATTGAGGAATC 345
Query 355 AAATGTACAACCTGTCAACAGTCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TAATGTACAACCTGTCAACAGTCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCA 405
Query 415 TGATCTTATGAAACTTTTCCAGACCGGAGGTCATGTTCCCGAGACCAATTACATATTTAT 474
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 406 TGATCTAATGAAGCTTTTCCAGACCGGAGGTCATGTTCCCGAGACAAATTACATATTTAT 465
Query 475 GGGGGATTTCGTTGATAGAGGTTACAACAGTCTTGAAGTTTTCACCATTCTTTTGCTTCT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GGGGGATTTCGTTGATAGAGGTTACAACAGTCTTGAAGTTTTCACCATTCTTTTGCTTCT 525
Query 535 TAAAGCAAGACATCCAGCCAATATCACTCTTTTGCGTGGAAATCATGAAAGTAGACAGCT 594
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 TAAAGCAAGACATCCAGCCAATATCACACTTTTGCGTGGAAATCATGAAAGTAGACAGCT 585
Query 595 AACTCAGGTGTATGGTTTCTATGACGAATGCCAAAGGAAGTATGGTAATGCTAATGCTTG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 586 AACTCAGGTGTATGGTTTCTATGACGAATGCCAAAGGAAGTATGGTAATGCTAATGCATG 645
Query 655 GAGATATTGCACGGATGTTTTTGACTATCTTACACTTTCAGCTATTATAGATGGCACTGT 714
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 646 GAGATATTGCACGGATGTTTTTGACTATCTCACACTTTCAGCTATTATAGATGGAACTGT 705
Query 715 TCTATGTGTTCATGGTGGCCTTTCACCTGATGTACGGACAATTGACCAGATAAGATTGAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TCTATGTGTTCATGGTGGCCTTTCACCTGATGTACGGACAATTGACCAGATAAGATTGAT 765
Query 775 TGAGCGGAATTGCGAAATACCGCATGAAGGACCCTTCTGTGATCTTATGTGGAGTGATCC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGAGCGGAATTGCGAAATACCGCATGAAGGACCCTTCTGTGATCTTATGTGGAGTGATCC 825
Query 835 TGAAGATATTGAAACATGGGCTGTCAGTCCACGTGGAGCTGGTTGGCTTTTCGGGTCCAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 826 TGAAGATATTGAAACATGGGCTGTCAGTCCACGTGGAGCTGGTTGGCTTTTTGGGTCCAG 885
Query 895 GGTTACCACTGAGTTTAACCATATTAACAATCTTGATCTAGTATGTCGCGCTCACCAGCT 954
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 886 GGTTACCACTGAGTTTAACCATATTAACAATCTTGATCTAGTATGTCGTGCTCACCAGCT 945
Query 955 TGTACAAGAAGGTCTCAAGTACATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGTACAAGAAGGTCTCAAGTACATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGC 1005
Query 1015 GCCTAATTACTGCTACCGTTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACAT 1074
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ACCTAATTACTGCTACCGCTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACAT 1065
Query 1075 GGAAAGGGAAGTGAAGTTCTTCACGGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAG 1134
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GGAAAGGGAAGTGAAATTCTTCACGGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAG 1125
Query 1135 GACAGGTGTTCCTTATTTCCTGTGATTCATGATGATGATCCTACATCATTATTAGTCTCG 1194
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1126 AACAGGTGTTCCTTATTTCCTGTGATTCATGATGATGATCCTACATCGTTATTAGTTTCG 1185
Query 1195 TATTGCTCTTATCAAGTTAGCCATTATCATGATTGCCATTGGCTTATGTTCTTT-CAAGG 1253
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1186 TATTGCTCTGATCAAGTTAGCCATTATCATGATTGCCATTGGCTTATGTTCTTTTCAAGG 1245
Query 1254 TATATCTTCTGATGTTGTTTACACTTCCATTGttttttttttcctttttccattttGGAA 1313
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1246 TATATCTTCTGATGTTGTTTACACTTGCATTGTTTCTT----CCTTTTTCCATTTTGGAA 1301
Query 1314 ACATTTTCTTGTGAAAGTGAATGTCACTTTGGTAATTTTAGTGGTTTTGATGCACTTTAA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ACATTTTCTTGTGAAAGTGAATGTCACTTTGGTAATTTTAGTGGTTTTGATGCACTTTAA 1361
Query 1374 CCTGAACCTCTTCTGGATGTTATTATTATACGTGCTTTCTTTCTTGTTTTGTTTCATCTT 1433
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1362 CCTCAACTTCTTCTGGATGTTATTATTATACGTGCTT-CTTTCTTGTTTTGTTTCATCTT 1420
Query 1434 TGTTCTGTAAGCAAGACCAATTTTTATC 1461
||||||||| ||||||||||||||||||
Sbjct 1421 TGTTCTGTATGCAAGACCAATTTTTATC 1448
> Ahg479516 jgi|Araly1|479516|fgenesh2_kg.3__2217__AT3G19980.1
Length=1515
Score = 1253 bits (678), Expect = 0.0
Identities = 835/913 (91%), Gaps = 2/913 (0%)
Strand=Plus/Plus
Query 248 ATGGATTTAGATCAATGGATTTCCAAGGTTAAAGACGGCCAACATCTCTCTGAGGACGAG 307
|||||||| |||||||||||||||||||||||||| || || |||||||| || ||||||
Sbjct 266 ATGGATTTGGATCAATGGATTTCCAAGGTTAAAGATGGTCAGCATCTCTCCGAAGACGAG 325
Query 308 CTTCAACTTCTCTGCGAATACGTGAAAGAAATTCTTATTGAGGAATCAAATGTACAACCT 367
||||| ||||||||||||||||||||||| ||||| |||||||| || || ||||| |||
Sbjct 326 CTTCAGCTTCTCTGCGAATACGTGAAAGAGATTCTGATTGAGGAGTCTAACGTACAGCCT 385
Query 368 GTCAACAGTCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAA 427
|| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 386 GTAAACAGTCCAGTCACAGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAG 445
Query 428 CTTTTCCAGACCGGAGGTCATGTTCCCGAGACCAATTACATATTTATGGGGGA-TTTCGT 486
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct 446 CTTTTTCAGACTGGAGGTCATGTTCCCGACACCAATTACATTTTTATGGGGGACTTT-GT 504
Query 487 TGATAGAGGTTACAACAGTCTTGAAGTTTTCACCATTCTTTTGCTTCTTAAAGCAAGACA 546
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||| ||| |
Sbjct 505 GGATAGAGGTTACAACAGCCTTGAAGTCTTCACTATTCTTTTACTTCTTAAAGCTAGATA 564
Query 547 TCCAGCCAATATCACTCTTTTGCGTGGAAATCATGAAAGTAGACAGCTAACTCAGGTGTA 606
|||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 565 TCCAGCCAATATTACACTTTTGCGTGGAAATCATGAAAGTAGGCAGCTAACGCAGGTGTA 624
Query 607 TGGTTTCTATGACGAATGCCAAAGGAAGTATGGTAATGCTAATGCTTGGAGATATTGCAC 666
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 625 TGGTTTCTATGACGAATGCCAGAGGAAGTATGGTAACGCTAATGCTTGGCGATATTGCAC 684
Query 667 GGATGTTTTTGACTATCTTACACTTTCAGCTATTATAGATGGCACTGTTCTATGTGTTCA 726
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 685 AGATGTTTTTGACTATCTTACCCTGTCAGCTATTATAGATGGCACAGTTCTATGTGTCCA 744
Query 727 TGGTGGCCTTTCACCTGATGTACGGACAATTGACCAGATAAGATTGATTGAGCGGAATTG 786
|| |||||||| || ||||| ||||||||||| ||||||||| |||| ||||| |||||
Sbjct 745 CGGGGGCCTTTCCCCGGATGTTCGGACAATTGATCAGATAAGACTGATCGAGCGAAATTG 804
Query 787 CGAAATACCGCATGAAGGACCCTTCTGTGATCTTATGTGGAGTGATCCTGAAGATATTGA 846
|||||| || |||||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 805 CGAAATTCCTCATGAAGGGCCCTTTTGCGATCTTATGTGGAGCGATCCTGAAGATATTGA 864
Query 847 AACATGGGCTGTCAGTCCACGTGGAGCTGGTTGGCTTTTCGGGTCCAGGGTTACCACTGA 906
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 AACATGGGCGGTTAGTCCACGTGGAGCTGGTTGGCTTTTCGGATCCAGGGTTACCACTGA 924
Query 907 GTTTAACCATATTAACAATCTTGATCTAGTATGTCGCGCTCACCAGCTTGTACAAGAAGG 966
|||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 925 GTTTAACCATATCAACAAGCTTGATCTAGTATGCCGCGCGCACCAGCTTGTACAAGAAGG 984
Query 967 TCTCAAGTACATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGCGCCTAATTACTG 1026
||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 985 TCTTAAGTACATGTTCCAAGATAAAGGCCTTGTAACTGTATGGTCTGCACCTAATTACTG 1044
Query 1027 CTACCGTTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGT 1086
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TTACCGCTGTGGGAATGTCGCATCTATATTGAGTTTCAATGACAACATGGAAAGGGAAGT 1104
Query 1087 GAAGTTCTTCACGGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGGACAGGTGTTCC 1146
|||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1105 GAAGTTCTTCACAGAGACAGAAGAGAACAATCAAATGAGAGGGCCAAGGACTGGAGTTCC 1164
Query 1147 TTATTTCCTGTGA 1159
|||||||| |||
Sbjct 1165 GTATTTCCTATGA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5