BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50400.1 Length=1157 Score E Sequences producing significant alignments: (Bits) Value Ahg337192 jgi|Araly1|337192|fgenesh1_pg.C_scaffold_1003757 1297 0.0 > Ahg337192 jgi|Araly1|337192|fgenesh1_pg.C_scaffold_1003757 Length=927 Score = 1297 bits (702), Expect = 0.0 Identities = 854/927 (92%), Gaps = 12/927 (1%) Strand=Plus/Plus Query 1 ATGGAGGGCTTTTCACCACCGATTAACACTGCGCAAGTCGATGCAAAGACCAAACTTGAC 60 ||||| |||||| ||||||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 1 ATGGACGGCTTTCCACCACCGATTTACACAGCGCAAGTCGATGCGAAGACCAAACTTGAC 60 Query 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCCTCTATGAGGAACTCAACCGTGAA 120 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCGTCTATGAGGAAATCCACCGTGAA 120 Query 121 GCT-ACCATGGCTTTAAAGCCAGAGCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTC 179 ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 121 GCTCAC-ATGGCTTTAAAGCCAGACCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTT 179 Query 180 GCTTAA-CCAGAAGTTTTTTCTCAGCCATAGCATATTGATGGGGCCAACTGAGGTTCCTA 238 | |||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| | Sbjct 180 G-TTAAACCAGAAGTTTTTTCTCAGCCATAGCGTATTGATGGGACCAGCTGAGGTTC--A 236 Query 239 ATCCAACTCCATCATCCGAAATAATCAAAATTCCAACTGCCAATTATGACTTTGGTGCTG 298 ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 237 ATC----TCCATCATCCGAAATAATCAAAATCCCAACTGCCAATTATGAATTTGGTGCTA 292 Query 299 GTTTCATCGATCCAAAGCTATATCTTATCGGAAGGATCACGACGGACGGTAGACTAAATG 358 || | | ||||||||||||| ||| ||||||||||||| ||||| ||||||||||||| Sbjct 293 ATTACGTTGATCCAAAGCTATGGCTTTTCGGAAGGATCACAACGGATGGTAGACTAAATG 352 Query 359 CGAGAGCCAAGTTCGATTTAACTGACAATTTTTCCGTCAAGGCTAATGCTCTGCTGACAG 418 |||||| ||||| |||||| ||||| ||||||||| |||||||||||||||||||||||| Sbjct 353 CGAGAGTCAAGTACGATTTGACTGATAATTTTTCCATCAAGGCTAATGCTCTGCTGACAG 412 Query 419 ATGAAGAAGATAAGTCGCAAGGCCACCTCGTCATTGATTACAAGGGGTCTGACTACAGAA 478 ||||| |||||||||||||||||||| || | |||||||||||||||| |||||||||| Sbjct 413 ATGAACAAGATAAGTCGCAAGGCCACTTCACCTTTGATTACAAGGGGTCAGACTACAGAA 472 Query 479 CTCAGCTTCAGCTTGGAAACAATTCCGTTTATGCAGCTAACTATATTCAGCATGTGACAC 538 |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| Sbjct 473 CTCAGCTTCAGCTTGGAAACAATTCCCTTTATGGAGCTAACTATATACAGCATGTGACAC 532 Query 539 CACACCTGTCTTTGGGTGGTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 598 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CACACCTGTCTTTGGGTGCTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 592 Query 599 GTTATGCAGCTCGATATGAGACTGACAAAACGGTTGCCTCTGGGCAAATTGCTTCCACTG 658 |||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| Sbjct 593 GTTATGCAGCTCGATATGAGACCGACAAAATGGTTGCCAGTGGGCAAATTGCTTCCACTG 652 Query 659 GTGTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGTTGTCATTTGCAACGGATT 718 || |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| | Sbjct 653 GTCTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGGTGTCTTTTGCTACGGACT 712 Query 719 TCATCTACAATTATTTGTCACGAGATGTTACAGCTAGTGTCGGGTATGACCTCATTACTA 778 |||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| || Sbjct 713 TCATTTACAATTTTTTATCACGAGATGTTACAGCTAGTGTCGGGTATGACTTCATTTTTA 772 Query 779 GACAGTCTCGATTAAGAGGAAAGGTTGATTCTAACGGTGTTGTC-GCTGCTTACCTTGAA 837 ||||||||||||||||||||||| | |||||||| ||||||| | ||||||||||||||| Sbjct 773 GACAGTCTCGATTAAGAGGAAAGATCGATTCTAAAGGTGTTG-CAGCTGCTTACCTTGAA 831 Query 838 GAACAATTGCCTATTGGACTCAGATTTCTTCTATCTGCAGAGGTGGATCATGTGAAGAAG 897 ||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 832 GAACAATTGCCTAGTGGACTCAGATTTCTTCTATCTGCGGAGGTGGATCATGTGAGGAAG 891 Query 898 GATTACAAGTTTGGTTTCGGTGTTAAC 924 ||||||||||||||||||||||||||| Sbjct 892 GATTACAAGTTTGGTTTCGGTGTTAAC 918 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43155142044 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5