BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50400.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337192 jgi|Araly1|337192|fgenesh1_pg.C_scaffold_1003757 1297 0.0
> Ahg337192 jgi|Araly1|337192|fgenesh1_pg.C_scaffold_1003757
Length=927
Score = 1297 bits (702), Expect = 0.0
Identities = 854/927 (92%), Gaps = 12/927 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGCTTTTCACCACCGATTAACACTGCGCAAGTCGATGCAAAGACCAAACTTGAC 60
||||| |||||| ||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGGACGGCTTTCCACCACCGATTTACACAGCGCAAGTCGATGCGAAGACCAAACTTGAC 60
Query 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCCTCTATGAGGAACTCAACCGTGAA 120
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 61 GAGAAAGTGGATTACTCAAACCTCCCTTGCCCTGTCGTCTATGAGGAAATCCACCGTGAA 120
Query 121 GCT-ACCATGGCTTTAAAGCCAGAGCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTC 179
||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCAC-ATGGCTTTAAAGCCAGACCTATTTGAGGGTTTCCGCCTCGACTATAACAAGTT 179
Query 180 GCTTAA-CCAGAAGTTTTTTCTCAGCCATAGCATATTGATGGGGCCAACTGAGGTTCCTA 238
| |||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
Sbjct 180 G-TTAAACCAGAAGTTTTTTCTCAGCCATAGCGTATTGATGGGACCAGCTGAGGTTC--A 236
Query 239 ATCCAACTCCATCATCCGAAATAATCAAAATTCCAACTGCCAATTATGACTTTGGTGCTG 298
||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 237 ATC----TCCATCATCCGAAATAATCAAAATCCCAACTGCCAATTATGAATTTGGTGCTA 292
Query 299 GTTTCATCGATCCAAAGCTATATCTTATCGGAAGGATCACGACGGACGGTAGACTAAATG 358
|| | | ||||||||||||| ||| ||||||||||||| ||||| |||||||||||||
Sbjct 293 ATTACGTTGATCCAAAGCTATGGCTTTTCGGAAGGATCACAACGGATGGTAGACTAAATG 352
Query 359 CGAGAGCCAAGTTCGATTTAACTGACAATTTTTCCGTCAAGGCTAATGCTCTGCTGACAG 418
|||||| ||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 353 CGAGAGTCAAGTACGATTTGACTGATAATTTTTCCATCAAGGCTAATGCTCTGCTGACAG 412
Query 419 ATGAAGAAGATAAGTCGCAAGGCCACCTCGTCATTGATTACAAGGGGTCTGACTACAGAA 478
||||| |||||||||||||||||||| || | |||||||||||||||| ||||||||||
Sbjct 413 ATGAACAAGATAAGTCGCAAGGCCACTTCACCTTTGATTACAAGGGGTCAGACTACAGAA 472
Query 479 CTCAGCTTCAGCTTGGAAACAATTCCGTTTATGCAGCTAACTATATTCAGCATGTGACAC 538
|||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||
Sbjct 473 CTCAGCTTCAGCTTGGAAACAATTCCCTTTATGGAGCTAACTATATACAGCATGTGACAC 532
Query 539 CACACCTGTCTTTGGGTGGTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CACACCTGTCTTTGGGTGCTGAGGCTTTCTGGCTTGGTCAGCAACTGATGTCGGGTGTTG 592
Query 599 GTTATGCAGCTCGATATGAGACTGACAAAACGGTTGCCTCTGGGCAAATTGCTTCCACTG 658
|||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 593 GTTATGCAGCTCGATATGAGACCGACAAAATGGTTGCCAGTGGGCAAATTGCTTCCACTG 652
Query 659 GTGTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGTTGTCATTTGCAACGGATT 718
|| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |
Sbjct 653 GTCTGGCTGTCATGAACTATGTTCATAAGGTTTCAGAGAAGGTGTCTTTTGCTACGGACT 712
Query 719 TCATCTACAATTATTTGTCACGAGATGTTACAGCTAGTGTCGGGTATGACCTCATTACTA 778
|||| ||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 713 TCATTTACAATTTTTTATCACGAGATGTTACAGCTAGTGTCGGGTATGACTTCATTTTTA 772
Query 779 GACAGTCTCGATTAAGAGGAAAGGTTGATTCTAACGGTGTTGTC-GCTGCTTACCTTGAA 837
||||||||||||||||||||||| | |||||||| ||||||| | |||||||||||||||
Sbjct 773 GACAGTCTCGATTAAGAGGAAAGATCGATTCTAAAGGTGTTG-CAGCTGCTTACCTTGAA 831
Query 838 GAACAATTGCCTATTGGACTCAGATTTCTTCTATCTGCAGAGGTGGATCATGTGAAGAAG 897
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 832 GAACAATTGCCTAGTGGACTCAGATTTCTTCTATCTGCGGAGGTGGATCATGTGAGGAAG 891
Query 898 GATTACAAGTTTGGTTTCGGTGTTAAC 924
|||||||||||||||||||||||||||
Sbjct 892 GATTACAAGTTTGGTTTCGGTGTTAAC 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5