BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50410.1
Length=3326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474167 jgi|Araly1|474167|fgenesh2_kg.1__4121__AT1G50410.1 5138 0.0
Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1 1779 0.0
> Ahg474167 jgi|Araly1|474167|fgenesh2_kg.1__4121__AT1G50410.1
Length=3242
Score = 5138 bits (2782), Expect = 0.0
Identities = 3113/3269 (95%), Gaps = 37/3269 (1%)
Strand=Plus/Plus
Query 1 ATTTTTCTCTCCGATCAAAACGCCGCCGTTGCGTCTCTGATTCTTCCTTTGGGTCAACTG 60
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1 ATTTTTTTCTCCGATCAAAACGCCGCCGTAGCGTCTCTGATTCTTTCTTTGGGT---C-- 55
Query 61 AGGAAAAAACCCTTCCTATGAAGAACAACAATTGGCTTCACACTCTCTCTTTTCTCAATT 120
|| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 -------AA--C-T--TATGAAGAACAACAATTGGCTTCACACTCTCTCTTTTCTCAATT 103
Query 121 TTGCTTCTTACTTCTTTCC----CCGGCTGATTAGAAACTTGACCGCTTGATTCTCTTAA 176
||||||||| ||||||||| ||||||||||||||||||||||||| ||||| | ||
Sbjct 104 TTGCTTCTTTCTTCTTTCCTGGTACGGCTGATTAGAAACTTGACCGCTTAATTCT-TCAA 162
Query 177 AGGAGGTCTTGCGATGGATTCCGCTATTGATATCAGTTCTGATAGTGATGTCGAGATACA 236
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 163 AGGAGTTCTTGCCATGGATTCCGCTATTGATATCAGTTCAGATAGTGATGTCGAGATACA 222
Query 237 AGAAACTAGAACCAGGCCTCAACATCCCCCACGGATAGCTGAAGGATCTCATAGAAGAGA 296
||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| || ||
Sbjct 223 AGAAACTAGAACCAGGCCTCAACTTCCCCCACGGACAGCTGAAGGGTCTCATAGGAGGGA 282
Query 297 TCTCTCTACGCTGAGACCGCACTTTCTTAGTGGGAGTTCTTCCGGTGCAAATGGCCACAC 356
|| ||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 283 TCCCTCTACGCTAAGACCGCAATTTTTTAGTGGGAGGTCTTCCGGTGCAAATGGCCACAC 342
Query 357 TAAAACAGGACTTACAAATCTCGAC-TCACGTAATGGTTTTGAATCCAAGCCACTGCCTC 415
||||||||||||||||||| || | |||||||||||||||||| ||||||||||||| |
Sbjct 343 GAAAACAGGACTTACAAATCCCG-CTTCACGTAATGGTTTTGAAACCAAGCCACTGCCAC 401
Query 416 GGGCAGAACACCATACACATATTCCGGGAAATGGGAGTATCGTAACTTCCAGAATTCCCA 475
|||||||||||| | ||||| || |||||||||||| ||| | |||||||||||||||||
Sbjct 402 GGGCAGAACACCGTGCACATTTTGCGGGAAATGGGACTATAGGAACTTCCAGAATTCCCA 461
Query 476 ATATCTCTGTTGGTGATTATGAGAAATTTTCATCTCAACAAGCTTTTAAAAGGACACATC 535
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 462 ATATCTCTGTTGGAGATTATGAGAAATTTTCATCTCAACAAGCTCTTAAAAGGACACATT 521
Query 536 CACCAACCTTTAGTCGACCTCCTTTTCCTCCTAGACCTGATATTGGTACAAGTAACGGGA 595
|| || | ||||||||| ||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 522 CAACAGCTTTTAGTCGAACTCCTTTTCCTCCCAGACCTGATATTGGCACAAGTAATGGGA 581
Query 596 ATGCGAGTCACTTTCGTGGTGGAGCACATGATGATCTAGGCATGGGGCGTGTGACTAACG 655
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 582 ATGCGAGTCACTTTCGAGGTGGAGCACATGATGAGATAGGCATGGGGCGTATGACTAATG 641
Query 656 GCACTCGGATCCTACCTCCATCTGTGGCGCACGGAACATCTGCGTCTCCTTCACATTTTA 715
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 642 GCACTCGGATCCTACCTCCATCTGTGGCGCATGGAACATCTGCGTCTCCTTCACATTTTA 701
Query 716 ATGGATTAAGTGATCCAATGCATAGGAATGGCATAGGCGAAGAAAGGAATTCGGAAAATG 775
|||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 702 ATGGTTTAAGTGATCCAATGCATAGGAATGGCATAACCGAAGAAAGGAATTCAGAAAATG 761
Query 776 ACGAGAGGCTGATCTATCAGGCTGCACTACAGGAACTGAATCAACCCAAGTCCGAGGTCG 835
| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 762 ATGAGAGGCTGATCTATCAGGCTGCACTACAGGAACTGAATCAGCCCAAGTCTGAGGTCG 821
Query 836 ATTTACCTGCTGGTCTTCTTTCGGTTCCCCTTATGAAGCATCAGAAAATTGCATTGGCAT 895
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 822 ATTTACCTGCCGGTCTTCTTTCTGTTCCCCTTATGAAGCATCAGAAAATTGCATTGGCCT 881
Query 896 GGATGTTTCAGAAGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GGATGTTTCAGAAGGAAACTAATAGTTTGCACTGTATGGGAGGGATATTAGCTGATGATC 941
Query 956 AGGGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCACGAGGCAA 1015
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 942 AGGGCCTTGGTAAGACAGTCTCGACTATTGCTCTTATCCTAAAGCAAATGCACGAGGCAA 1001
Query 1016 AATTAAAGTCCAAGAATTCAGGCAATCAAGAGGCTGAAGCATTGGATCTGGATGCTGATG 1075
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1002 AATTAAAGTCCAAGAATTCAGGCAATCAAGTGGCTGAAGCATTGGATCTGGATGCTGATG 1061
Query 1076 ATGAGTCAGAAAATGCATTTGAGAAACCAGAGTCTAAGGCTTCAAATGGTAGTGGTGTGA 1135
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1062 ATGAGTCAGAAAATGCATTTGAGAAACCAGAGTCTAAGGTTTCAAATGGTAGTGGTGTGA 1121
Query 1136 ATGGTGA-TTCAGGCATAAAGAAAGCCAAGGGAGAAGAAGCGAGTACTTCAACACGCAAA 1194
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 ATGGT-AGTTCAGGCATAAAGAAAGCCAAGGGAGAAGAAGCGAGTACTTCAACACGCAAA 1180
Query 1195 TTCAACAGAAAGAGACCAGCTGCTGGTACTTTAATTGTTTGTCCAGCAAGTGTTGTGCGG 1254
|||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1181 TTCAACAGGAAGCGACCAGCTGCTGGCACTTTAATTGTTTGTCCAGCAAGTGTTGTGCGG 1240
Query 1255 CAGTGGGCAAGAGAACTTGATGAGAAGGTTACTGATGAAGCCAAACTTTCTGTTTTAATA 1314
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1241 CAGTGGGCAAGAGAACTTGATGAGAAAGTTACTGATGAAGCCAAACTTTCTGTTTTAATA 1300
Query 1315 TACCACGGCGGTAACAGGACCAAAGATCCTATTGAACTAGCAAAATATGATGTGGTTATG 1374
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TACCACGGTGGTAACAGAACCAAAGATCCTATTGAACTAGCAAAATATGATGTGGTTATG 1360
Query 1375 ACAACTTACGCCATTGTTTCAAATGAAGTTCCAAAGCAACCCCTGGTTGATGACGATGAG 1434
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1361 ACAACTTACGCTATTGTTTCAAATGAAGTTCCAAAGCAACCCCTGGTGGATGACGATGAG 1420
Query 1435 AATGATGaaaaaaaTTCTGAAAAATATGGTCTCGCTTCTGGCTTCTCCATCAATAAGAAA 1494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1421 AATGATGAAAAAAATTCTGAAAAATACGGTCTCGCTTCTGGCTTCTCCATCAATAAGAAA 1480
Query 1495 CGGAAAAATGTAGTGGGTACTACTAAGAAGAGTAAGAAGAAAAAAGGTAACAATAATGCT 1554
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct 1481 CGGAAAAATGTAGTGGGTACTACTAAGAAAAGT---AAGAAAAAAGGTAAGAATAATGCT 1537
Query 1555 GGCGA---TTCATCTGACCCTGACTCTGGTACTCTAGCAAAAGTTGGGTGGTTCAGAGTT 1611
| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GACGATTCTTCGTCTGACCCTGACTCTGGTACTCTAGCAAAAGTTGGGTGGTTCAGAGTT 1597
Query 1612 GTACTAGATGAAGCTCAAACAATTAAGAATCATAGAACCCAGGTGGCAAGAGCATGTTGC 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 GTACTAGATGAAGCTCAAACAATTAAGAATCATAGAACCCAGGTGGCAAGAGCATGTTGC 1657
Query 1672 GGTCTTCGAGCCAAAAGGAGGTGGTGTTTGTCTGGAACACCAATACAAAATACAATAGAT 1731
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1658 GGTCTTCGAGCCAAAAGGAGATGGTGTTTGTCTGGAACACCGATACAAAATACAATAGAT 1717
Query 1732 GATTTATACAGCTATTTCAGGTTTCTAAAATATGATCCATATGCTGTGTACAAGTCATTC 1791
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1718 GATTTATACAGCTATTTCAGGTTTCTAAAATATGATCCATACGCTGTGTACAAGTCATTC 1777
Query 1792 TGCCACCAAATTAAGGGTCCAATTTCCAGAAATTCCCTTCAAGGGTACAAGAAGCTTCAG 1851
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1778 TGCCACCAAATTAAGGGTCCAATTTCCAGAAATTCCCTTCATGGTTACAAGAAGCTTCAA 1837
Query 1852 GCTGTTCTAAGGGCTATAATGCTACGCCGTACGAAAGGAACATTGCTTGATGGCCAGCCT 1911
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1838 GCTGTTCTAAGGGCTATAATGCTGCGCCGTACGAAAGGAACATTGCTTGATGGCCAGCCT 1897
Query 1912 ATAATTAATCTACCACCAAAGACAATTAATTTGAGCCAGGTGGACTTTTCGGTAGAGGAG 1971
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1898 ATAATTAATCTACCACCAAAGACAATTAATTTGAGCAACGTGGACTTTTCGGTAGAGGAG 1957
Query 1972 CGGTCTTTCTACGTGAAGCTTGAATCCGATTCCCGTTCTCAGTTCAAGGCATATGCTGCT 2031
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1958 CGGTCTTTCTACATGAAGCTTGAATCTGATTCACGTTCTCAGTTCAAGGCATATGCTGCT 2017
Query 2032 GCAGGAACTTTGAATCAAAACTATGCAAACATTCTTCTCATGCTTTTGCGACTACGCCAA 2091
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2018 GCAGGAACTTTGAATCAAAACTATGCAAACATTCTTCTCATGCTCTTGCGACTACGCCAA 2077
Query 2092 GCTTGTGACCACCCCCAACTTGTTAAAAGATATAACTCAGATTCTGTTGGAAAAGTATCA 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2078 GCTTGTGACCACCCCCAACTTGTTAAAAGATATAACTCAGATTCTGTTGGAAAAGTATCA 2137
Query 2152 GAAGAAGCTGTTAAAAAACTCCCTAAAGAGGATCTAGTTAGCCTGCTCAGTCGCTTAGAA 2211
|||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||
Sbjct 2138 GAAGAAGCTGTTAAAAGGCTCCCTAAAGAGGCTCGATTTAGCCTGCTCAGTCGCTTAGAA 2197
Query 2212 TCGTCTCCCATCTGTTGTGTCTGCCATGATCCACCAGAAGACCCTGTTGTTACTTTGTGT 2271
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2198 TCGTCTCCCATCTGTTGTGTCTGCCATGATCCACCAGAAGACTCTGTTGTTACATTGTGT 2257
Query 2272 GGCCATATATTCTGCTATCAGTGTGTATCAGATTATATCACAGGGGATGAGGACACGTGC 2331
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2258 GGCCATATATTCTGCTATCAGTGTGTATCAGATTATATCACAGGAGATGAGGACACGTGC 2317
Query 2332 CCTGCGCCTAGATGCAGAGAACAGCTTGCGCATGATGTTGTTTTCTCTAAATCCACGCTT 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2318 CCTGCGCCTAGATGCAGAGAACAGCTTGCGCATGATGTTGTTTTCTCTAAATCTACCCTT 2377
Query 2392 AGAAGTTGCGTTGCTGATGATTTGGGTTGTAGTTCCTCAGAGGATAATA-GTCATGATAA 2450
||||||||| ||||||||||||||||||||||||||||| ||||||| | | ||||| ||
Sbjct 2378 AGAAGTTGCATTGCTGATGATTTGGGTTGTAGTTCCTCACAGGATAA-AGGGCATGACAA 2436
Query 2451 ATCAGTTTTTCAGAATGGCGAGTTTAGTTCATCAAAGATCAAAGCTGTCTTAGATATTCT 2510
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 AGCAGTTTTTCAGAACGGCGAGTTTAGTTCATCAAAGATCAAAGCTGTCTTAGATATTCT 2496
Query 2511 GCAGTCGCTTTCTAACCAAGGCACTTCAAACTCAACACAGAATGGTCAAATGGCTTCTTC 2570
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2497 GCAGTCACTTTCTAACCAAGGCAGTCCAAACTCAACACAGAATGGTCAAATGGCTTCTTC 2556
Query 2571 CTCGCAGCAGCCGAatgatgatgatgatgatgatgatgatgatgTCACCATTGTCGAGAA 2630
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2557 CTCGCAGCAGCCG--T-ATGATGATGATGATGATGATGATGATGTCACCATTGTCGAGAA 2613
Query 2631 AACGAGTCTGAAGTCAACTCCTTCTAATGGAGGACCAATAAAAACGATTATATTTTCTCA 2690
| |||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2614 ACCGAGTCTGCAGTCAACTCCTTCTAACCGAGGACCAATAAAAACGATTATATTTTCCCA 2673
Query 2691 GTGGACTGGTATGCTTGACTTGGTGGAGCTATCTCTAATTGAAAATAGTATAGAATTCAG 2750
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 2674 GTGGACTGGTATGCTTGACTTGGTCGAGCTATCTCTAAATGAAAATAGTATAGAATTCAG 2733
Query 2751 AAGATTAGATGGTACAATGAGTCTAATTGCCAGAGACAGAGCTGTGAAAGAATTCAGCAA 2810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2734 AAGATTAGATGGTACAATGAGTCTAATTGCCAGAGACAGAGCTGTGAAAGAATTCAGCAA 2793
Query 2811 CGATCCAGATGTAAAAGTGATGATAATGTCTTTAAAAGCTGGAAATCTTGGGCTGAATAT 2870
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2794 CGATCCAGAGGTAAAAGTGATGATAATGTCTTTAAAAGCTGGAAATCTTGGGCTGAATAT 2853
Query 2871 GATTGCTGCATGTCATGTCATTCTTCTTGATCTATGGTGGAATCCAACTACTGAAGATCA 2930
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2854 GATTGCTGCATGTCATGTCATTCTTCTTGATCTTTGGTGGAATCCAACTACTGAAGATCA 2913
Query 2931 GGCTATTGATCGAGCACATCGTATTGGACAAACTCGACCTGTTACTGTAACTCGTATTAC 2990
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2914 GGCTATTGATCGAGCACATCGTATTGGACAAACTCGACCAGTTACTGTAACTCGTATTAC 2973
Query 2991 GATAAAAAATACTGTGGAGGATAGAATTTTGGCTCTCCAGGAAGAGAAAAGAAAAATGGT 3050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 GATAAAAAATACTGTGGAGGATAGAATTTTGGCTCTCCAGGAAGAGAAAAGAAAAATGGT 3033
Query 3051 TGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGA 3110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3034 TGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGATTAACAGTTGATGA 3093
Query 3111 TCTCAAATATCTATTCATGGTGTAGCTGTTCTTAAATCTTGGGTTGGCGAAGTTTCGCTT 3170
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3094 TCTCAAATATCTATTCATGGTGTAGCTGTTCTTAAATCTTCGGTTGGGGAAGTTTCGCTT 3153
Query 3171 CTTTCAGAATTTTGATCATGAGCTGCATTCTTGTGTTCTTCAGGTTCACAGATTTGAAAT 3230
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3154 CTTTCAGAATTTTGATCATGAGCTGCATTTTTGTGTTCTTCAGGTTCACAGATTTGAAAT 3213
Query 3231 GAGGAAATATGTAAATAACTTAGCTGTTG 3259
|||||||||||||||||||||| ||||||
Sbjct 3214 GAGGAAATATGTAAATAACTTATCTGTTG 3242
> Ahg479519 jgi|Araly1|479519|fgenesh2_kg.3__2220__AT3G20010.1
Length=3385
Score = 1779 bits (963), Expect = 0.0
Identities = 1675/2012 (83%), Gaps = 75/2012 (4%)
Strand=Plus/Plus
Query 1154 AGAAAGCCAAGGGA-GAAGAAGCGAGTACTTCAACACGCA-AATTCAACAGAAAGAGACC 1211
|||||||||| || |||||||| | | |||||||||| | ||| || | ||||||||
Sbjct 1175 AGAAAGCCAA-AGATGAAGAAGCAAATTCTTCAACACG-AGCATTTAAGTGGAAGAGACC 1232
Query 1212 AGCTGCTGGTACTTTAATTGTTTGTCCAGCAAGTGTTGTGCGGCAGTGGGCAAGAGAACT 1271
|||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 1233 AGCTGCTGGTACATTAATTGTTTGCCCAGCGAGTGTTGTACGGCAGTGGGCAAGAGAGCT 1292
Query 1272 TGATGAGAAGGTTACTGATGAA-GCCAAACTTTCTGTTTTAATATACCACGGCGGTAACA 1330
||||||||||||| |||| ||| | ||||||||||| ||| | ||||| || |||| |
Sbjct 1293 TGATGAGAAGGTTTCTGAAGAATG-GAAACTTTCTGTGTTAGTCTACCATGGTAGTAATA 1351
Query 1331 GGACCAAAGATCCTATTGAACTAGCAAAATATGATGTGGTTATGACAACTTACGCCATTG 1390
||||||||||||||| |||| ||||| |||| ||||||||| ||||||||||||| ||||
Sbjct 1352 GGACCAAAGATCCTAATGAATTAGCAGAATACGATGTGGTTGTGACAACTTACGCTATTG 1411
Query 1391 TTTCAAATGAAG-TTCCAAAGCAACCCCTGGTTGATGACGATGAGAATGATGaaaaaaaT 1449
|| | ||||||| | ||||| || | |||| ||||| |||||||| |||||||||| |
Sbjct 1412 TTACTAATGAAGCTCCCAAA-AAATTCTTGGTGGATGAGGATGAGAACGATGAAAAAAGT 1470
Query 1450 TCTGAAAAATATGGTCTCGCTTCTGGCTTCTCCATCAATAAGAAACGGAAAAAT-GTAGT 1508
|||| ||||||||||| || ||||||||||||| ||||||||| ||| ||| | | ||
Sbjct 1471 ACTGACAAATATGGTCTTGCCTCTGGCTTCTCCAACAATAAGAAGCGG-AAAGTCGCGGT 1529
Query 1509 GGGTACTACTAAGAAGAGTAAGAAGAAAAAAGGTAACAATAATG--CTGGCGA---TTCA 1563
|||| | | |||||||||| | || |||| |||| | || || | ||| | | |||
Sbjct 1530 GGGTGCCAGTAAGAAGAGT-A-AA-AAAAGAGGT-AGAA-AAAGCACTGACAATTCTTCT 1584
Query 1564 TCTGA-CCCTGACTCTGGTACTCTAGCAAAAGTTGGGTGGTTCAGAGTTGTACTAGATGA 1622
||||| ||| || | |||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct 1585 TCTGAGCCC-GATTGTGGTGCTCTAGGAAAAGTTGGGTGGTTCAGAATAGTACTAGATGA 1643
Query 1623 AGCTCAAACAATTAAGAATCATAGAACCCAGGTGGCAAGAGCATGTTGCGGTCTTCGAGC 1682
|||||| ||||| ||||| |||||||| || ||||||||| | |||||| |||||||||
Sbjct 1644 AGCTCAGACAATAAAGAACCATAGAACACAAGTGGCAAGATCCTGTTGCACTCTTCGAGC 1703
Query 1683 CAAAAGGAGGTGGTGTTTGTCTGGAACACCAATACAAAATACAATAGATGATTTATACAG 1742
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1704 CAAAAGGAGGTGGTGCTTGTCTGGAACACCAATACAAAATACGATTGATGATTTATATAG 1763
Query 1743 CTATTTCAGGTTTCTAAAATATGATCCATATGCTGTGTACAAGTCATTCTGCCACCA-AA 1801
||||||||||||||| | ||||||||||||||| | |||||||||||| | || | ||
Sbjct 1764 CTATTTCAGGTTTCTTAGATATGATCCATATGCGGCGTACAAGTCATT-TTACAGTACAA 1822
Query 1802 TTAAGGGTCCAATTTCCAGAAATTCCCT-TCAAGGGTACAAGAAGCTTCAGGCTGTTCTA 1860
| |||| ||||||||||||||||| | | |||||| |||||||||||||| |||||||||
Sbjct 1823 TCAAGGTTCCAATTTCCAGAAATT-CTTGTCAAGGTTACAAGAAGCTTCAAGCTGTTCTA 1881
Query 1861 AGGGCTATAATGCTACGCCGTACGAAAGGAACATTGCTTGATGGCCAGCCTATAATTAAT 1920
|||||||||||||| ||||| || ||||||||||| |||||||| | || || ||||||
Sbjct 1882 AGGGCTATAATGCTGCGCCGCACCAAAGGAACATTACTTGATGGGAAACCCATTATTAAT 1941
Query 1921 CTACCACCAAAGACAA-TTAATTTGAGCCA-GGTGGACTTTTCGGTAGAGGAGCGGTCTT 1978
||||| ||||| | || |||||||||| || ||| || ||||| || || ||||| ||||
Sbjct 1942 CTACCTCCAAA-AAAAGTTAATTTGAG-CACGGTAGATTTTTCAGTGGAAGAGCGCTCTT 1999
Query 1979 TCTAC-GTGAAGCTTGAATCCGATTCCCGTTCTCAGTTCAAGGCATATGCTGCTGCAGGA 2037
||||| | |||||||||| | ||||| ||||| ||||||||||| ||||||| ||| |||
Sbjct 2000 TCTACAG-GAAGCTTGAAGCGGATTCACGTTCACAGTTCAAGGCCTATGCTGATGCGGGA 2058
Query 2038 ACTTTGAATCAAAACTATGCAAACATTCTTCTCATGCTTTTGCGACTACGCCAAGCTTGT 2097
||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 2059 ACTTTGAGTCAAAACTACGCAAATATTCTTCTGATGCTTTTGCGACTCCGCCAAGCTTGT 2118
Query 2098 GACCACCCCCAACTTGTTAAAAG-ATATAACTCAGATTCTGTTGGAAAAGTATCAGAAGA 2156
|||||||| ||||||||| |||| ||||||||||||| |||||||||||| ||||||||
Sbjct 2119 GACCACCCACAACTTGTT-AAAGTATATAACTCAGATCCTGTTGGAAAAGAATCAGAAGC 2177
Query 2157 AGCTGTTAAAAAACTCCCTAAAGAGGATC-TAGTTAGCCTGCTCAGTCGCTTAGA---AT 2212
||| |||| || |||||||| |||| || || || ||| ||| ||||||||| ||
Sbjct 2178 AGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAG-CAGACTGATCAATCGCTTAGAGTTAT 2236
Query 2213 CGTCTCCCATCTGTTGTGTCTGCCATGATCCACCAGAAGACCCTGTTGTTACTTTGTGTG 2272
| ||| ||||||| | || ||| |||| ||||||||| | |||||||||| |||||||
Sbjct 2237 CATCTGCCATCTGCTATGAGTGCAATGAGCCACCAGAAAAACCTGTTGTTAAGTTGTGTG 2296
Query 2273 GCCATATATTCTGCTATCAGTGTGTATCAGATTATATCACAGGGGATGAGGACACGTGCC 2332
||||| |||| |||||| | ||||| | ||| || || || ||||||||| |||||||||
Sbjct 2297 GCCATGTATTTTGCTATGAATGTGTTTTAGAATACATAACTGGGGATGAGAACACGTGCC 2356
Query 2333 CTGCGCCTAGATGCAGAGAACAGCTTGCGCATGATGTTGTTTTCTCTAAATCCACGCTTA 2392
||| || ||||||| | |||||||||||| |||||||||||||||| |||| ||||||
Sbjct 2357 CTGTACCGAGATGCAAACAACAGCTTGCGCGTGATGTTGTTTTCTCTGAATCTTCGCTTA 2416
Query 2393 GAAGTTGCGTTGCTGATGATTTGGGTTGTAGTTCCTCAG-AGGATAATA-GTCAT-GATA 2449
||| |||| || ||||||||||||| ||||||||||| | | ||||| | ||| | ||||
Sbjct 2417 GAAATTGCATTTCTGATGATTTGGGCTGTAGTTCCTC-GCATGATAA-AGGTC-TCGATA 2473
Query 2450 AATCAGTTTTTCAGAATGGCGAGTTTAGTTCATCAAAGATCAAAGCTGTCTTAGATATTC 2509
||| |||||| | || |||||||| |||||||||| |||||||||||| | ||||| |
Sbjct 2474 GATCGGTTTTTGAAAAAAGCGAGTTTTGTTCATCAAAAATCAAAGCTGTCCTCGATATCC 2533
Query 2510 TGCAGTCGCTTTCTAACCAAGGCACTTCAAACTCAACACAGAATGGTCAAATGGCTTCTT 2569
||||||||||||| || |||| |||| |||||||| | ||| ||||||||||| | ||||
Sbjct 2534 TGCAGTCGCTTTCCAAACAAGACACTCCAAACTCAGCTCAGCATGGTCAAATGCCATCTT 2593
Query 2570 CCTCGCAGCAGCCGAatgatgatgatgatgatgatgatgatgatgTCACCATTGTCGAG- 2628
||| || | ||| | | ||||||| ||||||| | | |||||||| |||
Sbjct 2594 CCT--CA-CGGCC----------G-T-ATGATGACGATGATG-T-T-ACCATTGTAGAGC 2635
Query 2629 AAAACGAGTCTGAAGTCAACTCCTTCTAATG-GA-GGACCAATAAAAACGATTATATTTT 2686
||| | |||| | ||| || | || | | | || || |||||||||| |||||||
Sbjct 2636 CAAA-GCGTCTTCACTCATCTTCACCT-A-GCCAGGGGGCAGTAAAAACGATAATATTTT 2692
Query 2687 CTCAGTGGACTGGTATGCTTGACTTGGTGGAGCTATC-TCTAATTGAAAATAGTATAGAA 2745
|||||||||||||||||||||||||||| ||||| | | | |||||| | |||| |||
Sbjct 2693 CTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTG-CGTATTCTTGAAAGTGGTATTGAA 2751
Query 2746 TTCAGAAGATTAGATGGTACAATGAGTCTAATTGCCAGAGACAGAGCTGTGAAAGAATTC 2805
||||||||||||||||| |||||||||||| || |||||||| || || |||||||||
Sbjct 2752 TTCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTAAAAGAATTC 2811
Query 2806 AGCAACGATCCAGATGTAAAAGTGATGATAATGTCTTTAAAAGCTGGAAATCTTGGGCTG 2865
|| || ||||||||||||| |||||| | |||||| ||||||||||||| |||||||||
Sbjct 2812 AGTAAAAATCCAGATGTAAAGGTGATGCTGATGTCTCTAAAAGCTGGAAACCTTGGGCTG 2871
Query 2866 AATATGATTGCTGCATGTCATGTCATTCTTCTTG-ATCTATGGTGGAATCCAACTACTGA 2924
|||||| | |||||||||||||| ||||| |||| |||| ||||||||||||||||| ||
Sbjct 2872 AATATGGTAGCTGCATGTCATGTTATTCT-CTTGGATCTTTGGTGGAATCCAACTACCGA 2930
Query 2925 AGATCAGGCTATTGATCGAGCACATCGTATTGGACAAACTCGACCTGTTACTGTAACTCG 2984
||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 2931 AGATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCG 2990
Query 2985 TATTACGATAAAAAATACTGTGGAGGATAGAATTTTGGCTCTCCAGGAAGAGAAAAGAAA 3044
||||| |||||| | || || ||||||||||||||| | || |||||||| ||||| |
Sbjct 2991 CATTACTATAAAAGACACCGTTGAGGATAGAATTTTGACGCTTCAGGAAGATAAAAGGAC 3050
Query 3045 AATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGAT-TAACAG 3103
||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 3051 AATGGTTGCATCTGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCAACACG-TCTAACAG 3109
Query 3104 TTGATGATCTCAAATATCTATTCATGGTGTAG 3135
| || |||||||||||||| || ||| |||||
Sbjct 3110 TAGACGATCTCAAATATCTGTTTATGTTGTAG 3141
Score = 348 bits (188), Expect = 2e-94
Identities = 358/439 (82%), Gaps = 16/439 (4%)
Strand=Plus/Plus
Query 662 GGATCCTACCTCCATCTGTGGCGCACGGAACATCTGCGTCTCCTTCACATTTTAATGGAT 721
||||||| ||||||||| || |||| ||||||||||| ||| || ||| | ||| |
Sbjct 635 GGATCCTGCCTCCATCTCTGACGCATGGAACATCTGCTTCTGTTTTGCATCATGCTGG-T 693
Query 722 T-AAGTGATCCAATGCATAGGAATGGCATAGGCGAAGAAAGGAATTCGGAAAATGACGAG 780
| ||||||||||||||| ||| ||| || || ||||| |||||| | || || || |||
Sbjct 694 TCAAGTGATCCAATGCACAGGTTTGGTATTGGTGAAGATAGGAATCCTGATAACGATGAG 753
Query 781 AGGCTGATCTATCAGGCTGCACTACAGGAACTGAATCAACCCAAGT-CCG-AGGTCGATT 838
||| || | |||||||||||||||||||| ||||||||||| | | ||| | | ||||
Sbjct 754 AGGTTGGTTTATCAGGCTGCACTACAGGATTTGAATCAACCC-ATTACCGAAAG-CGATC 811
Query 839 TACCTGCTGGTCTTCTTTCGGTTCCCCTTATGAAGCATCAGAAAATTGCATTGGCATGGA 898
||||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 812 TACCTCCTGGTGTTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGGCATGGA 871
Query 899 TGTTTCAGAAGGAAACTAATA-GTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG 957
|||||||||||||||| || | |||| ||||| |||||| ||| |||| |||||||||
Sbjct 872 TGTTTCAGAAGGAAAC-AAGAAGTTTTAACTGTGCGGGAGGAATACTAGCAGATGATCAG 930
Query 958 GGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCAC-GAGGCAAA 1016
|| ||||||||||| |||||||| ||||| |||||||||||||||| | | | | ||
Sbjct 931 GGACTTGGTAAGACGGTCTCGACGATTGCTCTTATCCTAAAGCAAAAG-ATTGTGTCACT 989
Query 1017 ATTAAAGTC--CAAGAATTCAGGCAATCAAGAGGCTGAAGCATTGGATC-TGGATGCTGA 1073
| | ||||| ||| | |||| |||| ||||| |||| ||||| | || ||||||||||
Sbjct 990 ACTGAAGTCTGCAA-A-TTCATGCAAGCAAGAAACTGAGGCATTAG-TCCTGGATGCTGA 1046
Query 1074 TGATGAGTCAGAAAATGCA 1092
|||||||||||| ||||||
Sbjct 1047 TGATGAGTCAGACAATGCA 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125551933327
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5