BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50430.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474170 jgi|Araly1|474170|fgenesh2_kg.1__4124__AT1G50430.1 2514 0.0
> Ahg474170 jgi|Araly1|474170|fgenesh2_kg.1__4124__AT1G50430.1
Length=1600
Score = 2514 bits (1361), Expect = 0.0
Identities = 1542/1624 (95%), Gaps = 34/1624 (2%)
Strand=Plus/Plus
Query 9 TTCATCGTTAACTTCGCAGACTCTGTT--GATTAGTCAACACAGATCAGAATCTGAGGC- 65
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2 TTCATCGTTAACTTCGCAGACTCTGTTGGGATTAGTCAACACAGATCAGAATCTGA-GCT 60
Query 66 TTTGGCCGAGAC--GAG-AGAAGCAGAAGAAGAAAATGGCGGAGACTGTACATTCTCCGA 122
|||||||||||| | | ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 61 TTTGGCCGAGACAAGCGAAGAAGAAGAAGAAGAAGATGGCGGAGACTGTACATTCTCCGA 120
Query 123 TCGTTACTTACGCATCGATGTTATCGCTTCTCGCCTTCTGTCCACCTTTCGTCATTCTCC 182
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCGTTACTTACGCATCGATGTTATCGCTTCTCGCTTTCTGTCCACCTTTCGTCATTCTCC 180
Query 183 TATGGTACACAATGGTTCATCAGGATGGTTCTGTTACTCAGACCTTTGGCTTCTTTTGGG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGGTACACAATGGTTCATCAGGATGGTTCTGTTACTCAGACCTTTGGCTTCTTTTGGG 240
Query 243 AGAATGGAGTTCAAGGACTTATCAACATATGGCCAAGACCCACTTTGATTGCTTGGAAAA 302
| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 241 AAAATGGAGTTCAAGGACTCCTCAACATTTGGCCAAGACCCACTTTGATTGCTTGGAAAA 300
Query 303 TTATATTTTGCTATGGAGCATTTGAAGCTATTCTTCAGCTGCTTCTGCCTGGTAAAAGAG 362
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 301 TTATATTTTGCTATGGAGCATTTGAAGCTGCTCTTCAGCTACTTCTGCCTGGTAAAAGAG 360
Query 363 TTGAGGGTCCAATATCTCCAGCCGGAAACCGACCAGTTTACAAGGCCAATGGTCTGGCTG 422
|||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 361 TTGAGGGTCCGATATCTCCAGCCGGAAACCGACCAGTTTATAAGGCCAATGGTGTGGCTG 420
Query 423 CTTACTTTGTGACACTAGCAACCTATCTTGGTCTTTGGTGGTTTGGAATCTTCAACCCTG 482
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CTTACTTTGTGACACTAGCTACCTATCTTGGTCTTTGGTGGTTTGGGATCTTCAACCCTG 480
Query 483 CAATTGTCTATGATCACTTGGGTGAAATATTTTCGGCACTAATATTCGGAAGCTTCATAT 542
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 481 CAATTGTCTATGATCACTTGGGTGAAATATTTTCGGCACTAATATTTGGAAGCCTCATAT 540
Query 543 TTTGTGTTTTGTTGTACATAAAAGGCCATGTTGCACCTTCATCAAGTGACTCTGGTTCAT 602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 541 TTTGTGTTTTGTTGTACATAAAAGGCCATGTTGCACCTTCATCAAATGACTCTGGTTCAT 600
Query 603 GTGGTAACCTAATAATTGACTTCTATTGGGGCATGGAGTTGTACCCTCGAATTGGTAAGA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGGTAACCTAATAATTGACTTCTATTGGGGCATGGAGTTGTACCCTCGAATTGGTAAGA 660
Query 663 GCTTTGACATCAAGGTGTTTACTAATTGCAGATTCGGAATGATGTCTTGGGCAGTTCTTG 722
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 ACTTTGACATCAAGGTGTTTACTAACTGCAGATTCGGAATGATGTCTTGGGCAGTTCTTG 720
Query 723 CAGTCACGTACTGCATAAAACAGTATGAAATAAATGGCAAAGTATCTGATTCAATGCTGG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGTCACGTACTGCATAAAACAGTATGAAATAAATGGCAAAGTATCTGATTCAATGCTGG 780
Query 783 TGAACACCATCCTGATGCTGGTGTATGTCACAAAATTCTTCTGGTGGGAAGCTGGTTATT 842
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAACACCATCTTGATGCTGGTGTATGTCACAAAATTCTTCTGGTGGGAAGCTGGTTATT 840
Query 843 GGAACACCATGGACATTGCACATGACCGAGCTGGATTCTATATATGCTGGGGTTGTCTAG 902
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 GGAACACCATGGACATTGCACATGACCGAGCTGGCTTCTATATATGCTGGGGTTGTCTAG 900
Query 903 TGTGGGTGCCTTCTGTCTACACTTCTCCAGGCATGTACCTTGTGAACCACCCCGTCGAAC 962
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGTGGGTGCCTTCTGTGTACACTTCTCCAGGCATGTACCTTGTGAACCACCCCGTCGAAC 960
Query 963 TCGGAACTCAGTTGGCAATATACATTCTCGTTGCAGGAATTCTGTGCATTTACATAAACT 1022
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 961 TTGGAACTCAGTTGGCAATATACATTCTAGTTGCAGGAATTCTCTGCATATACATAAACT 1020
Query 1023 ATGACTGTGATAGACAAAGGCAAGAGTTCAGGAGGACAAACGGGAAATGTTTGGTTTGGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGACTGTGATAGACAAAGGCAAGAGTTCAGGAGGACAAACGGGAAATGTTTGGTTTGGG 1080
Query 1083 GAAGGGCCCCGTCAAAGATTGTGGCGTCGTATACTACAACATCTGGTGAAACTAAAACTA 1142
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGAGCGCCGTCAAAGATTGTGGCGTCGTATACTACAACATCTGGTGAAACTAAAACTA 1140
Query 1143 GTCTTCTCTTAACGTCTGGATGGTGGGGATTGGCTCGTCATTTCCATTATGTTCCTGAGA 1202
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 GTCTTCTCTTAACGTCTGGATGGTGGGGTTTGGCTCGTCATTTCCATTATGTTCCTGAGA 1200
Query 1203 TCTTAAGTGCTTTCTTCTGGACCGTACCGGCTCTCTTCGATAACTTCTTGGCATACTTCT 1262
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1201 TCTTAAGTGCTTTCTTCTGGACTGTACCGGCTCTCTTCGATAATTTCTTGGCATACTTCT 1260
Query 1263 ACGTCATATTTCTCACCCTTCTTCTCTTTGATCGAGCCAAGAGAGACGATGACCGATGCC 1322
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1261 ACGTCATATTTCTCACCATTCTTCTCTTCGATCGAGCCAAGAGAGACGATGACCGATGCC 1320
Query 1323 GATCAAAGTATGGGAAATATTGGAAGCTGTATTGTGAGAAAGTCAAATACAGGATCATTC 1382
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1321 GATCAAAGTATGGGAAATATTGGAAGCTGTACTGTGAGAAAGTCAAATACAGGATCATTC 1380
Query 1383 CGGGAATTTATTGATTGTAACGAAGTCTGTTGTTCTCATTTTCTACTTATTACGTTAATT 1442
|||| |||||||||||||||||||||||||| ||||| |||| | ||| | || |
Sbjct 1381 CGGGGATTTATTGATTGTAACGAAGTCTGTTTTTCTC-TTTT-T--TTA--A--TT--T- 1429
Query 1443 CGAACGTTGGAATCATCAAAAGACCGTGCCAAAA-CAAAAATGCAAATTGATGCGATAGA 1501
||||||||||||||||||||||||| | |||| ||||| || | | | || ||||
Sbjct 1430 -GAACGTTGGAATCATCAAAAGACCGAG--AAAAGCAAAATTG-A--T--A--CGTTAGA 1479
Query 1502 CATTCTTTTGCTGATTTGTATGCTATAGGTTTTCAAATCTCTAGCTACACTTATGTATTT 1561
|||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||
Sbjct 1480 CATTATTTTGCTGATTTGTATGCTATAGGTTTTGAAATCTCTAGTTACGCTTATGTATTT 1539
Query 1562 CCCTAGATTATC-AAAGTTAGCCTGCCGTTTTCTAATTTT-ATTATTTGATATTTTGATT 1619
||||||||||| ||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1540 CCCTAGATTATTTAAATTTAGCCTGCCGTTTT--AATTTTTAT-ATTTGATATTTTGATT 1596
Query 1620 ATAC 1623
||||
Sbjct 1597 ATAC 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5