BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50440.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474173 jgi|Araly1|474173|fgenesh2_kg.1__4127__AT1G50440.2 1655 0.0
> Ahg474173 jgi|Araly1|474173|fgenesh2_kg.1__4127__AT1G50440.2
Length=1221
Score = 1655 bits (896), Expect = 0.0
Identities = 996/1043 (95%), Gaps = 12/1043 (1%)
Strand=Plus/Plus
Query 202 TTC-CAGAAATTTTAGTATGTTTAAGAGATGCAATTAGTGCCTAGTGATGATGATGATGA 260
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTCACAGAAATTTTAGTATGTTTAAGAGATGCAATTAGTGCCTAGTGATGATGATGATGA 248
Query 261 TAGAAAGGAACAGATTTTATTCGACGAATCAACATCCTCAAACGAAATCGTAGCAGCGGA 320
||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 249 TAGGAAGGAACATATTTTATTCGACGAATCAACATCCTCGAACGAAATCGTAGCTGCGGA 308
Query 321 AAGAGGAGATCGTGTTGTGGAGGAAGGACAAGTTTCAGAAATAGCTGAGACTGATGATGA 380
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 AAGAGGAGATCGTGTTTTGGAGGAAGGACAAGTTTCAGAAATAGCTGAGACTGATGATGA 368
Query 381 CGAAACCACACTTCTTGTTTCTGGAGATCAACCACAATGTCGAATTTGCCTTGATGTTGG 440
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CGAAACTACACTTCTTGTTTCTGGAGATCAACCACAATGTCGAATTTGCCTTGATGTTGG 428
Query 441 AGGGGAAGATCTGATTGCTCCGTGCAATTGTAAAGGTACTCAAAAGCACGTTCACAGATC 500
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 429 AGGAGAAGATCTGATTGCTCCGTGCAATTGTAAAGGTACTCAGAAGCACGTTCACAGATC 488
Query 501 TTGTCTCGATAATTGGCGCTCCACCAAGGAAGGTTTTGCATTTTCGCATTGTACAGAGTG 560
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TTGCCTTGATAATTGGCGTTCCACCAAGGAAGGTTTTGCATTTTCGCATTGTACAGAGTG 548
Query 561 TAGAGCCTTTTTCAAACTCCGAGCCAATGTGCCTGCTGATAGATGGTGGTTGAGATTGAG 620
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 549 TAGAGCCTTCTTCAAACTCCGAGCCAATGTACCTGCTGATAGATGGTGGTTGAGATTGAG 608
Query 621 ATTTCAGCTGCTGGTTGCTAGAGATCATGCCTTCATCTTCATTTCTGTCCAGATGATTGT 680
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATTTCAGCTGCTGGTTGCTAGGGATCATGCCTTCATCTTCATTTCTGTCCAGATGATTGT 668
Query 681 AGCATTCTTGGGGTTACTAGTTTACAAGTTCTACGGTGAAGAACTACGAGAAATGTTTGG 740
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 669 AGCATTCTTGGGGTTACTAGTTTACAAATTCTACGGTGAAGAACTACGAGAAATGTTTGG 728
Query 741 TTATGAGGAACATCCTTATGGGTTCTACACATTGGCTGTTTTGGCCATTGTCTTGGTAGG 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTATGAGGAACATCCTTATGGGTTCTACACATTGGCTGTTTTGGCCATTGTCTTGGTAGG 788
Query 801 ACTGCTATATGGATTCTTCATCGCCATAATATGTGGCCAAAAGATCAACGAGCGGCATTA 860
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 789 ACTGTTATACGGATTCTTCATCGCCATAATATGTGGTCAAAAGATCAACGAGCGGCATTA 848
Query 861 CCATGTTCTCGCCAAACAAGAACTCACAAAGGAATATATAGTGGAAGACCGCGACTGCAA 920
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 849 CCATGTTCTCGCCAAACAAGAACTCACGAAGGAATATATAGTGGAAGACCGCGACTGCAA 908
Query 921 GAATGTTCCTGAGCTTGATCAGAGTCATGTGATGGAACTAAAAATGTTGGGACTTTATTG 980
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 909 GAATGTTCCTGAGCTTGACCAGAGTCATGTGATGGAACTCAAAATGTTGGGACTTTATTG 968
Query 981 AACATATACTACAAGAAAAGAGCTTGTTGGATCTTTACTCTTCATGTCACCTGTAAATTA 1040
|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 969 AACATATAGTACAAGGAAAGAGCTTGTTGGATCTTTACTTTTCATGTCACCTGTAAATTA 1028
Query 1041 TATTCTTCATTGATTTATATGGTTGCTTCAACGAACGATTGTGTCATCTCCAAGTGGttt 1100
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1029 TATTCTTCATTGATTTATATGGTTGTTTCAACGAACGATTGTGTCATCGCCAAGTGGTTT 1088
Query 1101 tttgatttttttttttttttAAGTTGTATATCTTCTGATGAACATGTTTATCTGTTCGAG 1160
||||||||||||||| | | |||| | || ||||||| |||||||||||| |||
Sbjct 1089 TTTGATTTTTTTTTT-----A--T-GTATCT-TT-TGATGAAAATGTTTATCTGTAAGAG 1138
Query 1161 TATACATATCAGAAGTAAATTGGTTTACAAAGTAAAGTATCGATGATCA-TCTATGTTTC 1219
|||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 TATACACATCAGACGCAAATTGGTTTACAAAGTAAAGTATCGATGATCAATCTATGTTTC 1198
Query 1220 TTCTTCCTCAGTCGAACTCATAC 1242
||| ||||| |||||||||||||
Sbjct 1199 TTCATCCTCGGTCGAACTCATAC 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5