BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50460.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1 2776 0.0
Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1 1219 0.0
> Ahg474175 jgi|Araly1|474175|fgenesh2_kg.1__4129__AT1G50460.1
Length=2007
Score = 2776 bits (1503), Expect = 0.0
Identities = 1815/1960 (93%), Gaps = 44/1960 (2%)
Strand=Plus/Plus
Query 1 AATCCATAAATCTCTTCCTCTCTCTCTTTCTTATTTAATCGTCACTTGACCGCCGGT--- 57
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1 AATCCATAAATCTCTT--TCTCTCTC-TGAATATTTAATCGTCACTTGACCGCCGGTAAG 57
Query 58 AAGAAACTCGAGAGTTTGAATCGTTTTTTAACCCTCGCCGGTGATTATTGACTGGAAAAC 117
||||||||||| ||||| ||||||||| ||||| | ||||| |||||||||| |
Sbjct 58 AAGAAACTCGAAAGTTTCAATCGTTTTCTAACCTTTGCCGGAGATTATTGAC-------C 110
Query 118 ACCAAACGAATCGAAGCAGTTAGTTTACAGGTAGAGCAGTGACAGCTGAGCaaaaaaaaa 177
| | | ||||||||| || || ||||||||||||||||||||| ||||||
Sbjct 111 ATC-GA--AATCGAAGC----AG-TT----GTAGAGCAGTGACAGCTGAGC---AAAAAA 155
Query 178 ggcggcggaaaaaaaaGTA-GTAGTAGTTGATGATGATGAAGATGGTGAAACAGATTCGT 236
|||||||||||| |||||| || || | |||||||||||| |||| | | ||| ||||||
Sbjct 156 GGCGGCGGAAAACAAAGTAGGT-GTTGATGATGATGATGATGATGATTACACAAATTCGT 214
Query 237 ATAGGGTTTTCTAATCGGCGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 296
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ATAGGGTTTTATAATCGACGGTGTTCGCTGTTCGTGAACTCTTTATTGGAGTAAGTAAAA 274
Query 297 AGCGCCAGAGAGAGAGATATTGTGTATTTGTCTTTTTGGTTCTGTTTTGGGATGGGGAAA 356
| | | | | ||| || | || ||||||| || ||| ||||||||||
Sbjct 275 TGTG-TA-TTTGTCTTTTTTTG-GT-TCTG--TTTTTGG--GTG-GTTGTGATGGGGAAA 325
Query 357 GTGGCGGTTGCGTTTGCGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCGCGGTGATG 416
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 326 GTGGCGGTTGCGTTTGCGGCGGGGGCTGTTGTGGCGGCTTGTTCTGTTGCGGCGGTGATG 385
Query 417 GTTGGGAGGAGGATGAAGAGTCGGAGGAAATGGAGGACTGTTGTTGAGATTTTGAAAGAG 476
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 386 GTTGGGAGGAGGATGGAGAGTCGGAGGAAATGGAGGACTGTGGTTGAGATTTTGAAAGAA 445
Query 477 TTGGAGGATGATTGTGATACTCCGGTTGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCC 536
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 446 TTGGAGGATGATTGTGATACTCCGGTGGGGAGGTTGAGGCAAGTGGTTGATGCTATGGCG 505
Query 537 GTGGAGATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACT 596
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 506 GTGGAGATGCACGCTGGATTGGCTTCTGAAGGAGGCTCTAAGCTTAAAATGCTCCTCACT 565
Query 597 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGA 656
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 566 TTCGTCGATGATTTGCCCACTGGGAGGGAGAAAGGAACTTATTATGCACTTCACCTTGGA 625
Query 657 GGCACTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTT 716
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 626 GGCACTTATTTTAGGATTTTAAGAGTTCTTCTGGGTGGTCAAAGGTCTTATCTAGATGTT 685
Query 717 CAAGATGTTGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CAAGATGTCGAACGACACCCAATACCTTCACATTTGATGAATAGCACCAGCGAGGTTCTT 745
Query 777 TTCAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCGAT 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 TTCAACTTTCTCGCTTTTTCCTTGGAAAGGTTTATTGAAAAGGAGGAAAACGGGTCCAAT 805
Query 837 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTTCT 896
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 806 TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTTTCATTCCCTGTCAAGCATACTTCT 865
Query 897 ATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGG 956
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 866 ATTTCTTCAGGAGTTCTAATCAAATGGACCAAAGGTTTTGAGATTAGTGAAATGGTTGGA 925
Query 957 CAAGATATAGCTGAATGTCTACAAGGAGCTCTGAACAGAAGAGGCCTAGATATGCATGTT 1016
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 926 CAAGATATAGCTGAATGTCTACAAGGAGCGCTTAACAGAAGAGGCCTAGATATGCACGTT 985
Query 1017 GCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTTGGATATTATCACGATCCAGAT 1076
| || |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 986 GGGGTTCTTGTGAATGATACTGTGGGAGCCTTGTCGCTTGGATATTATCATGATCCAGAC 1045
Query 1077 ACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTACTTGGAAAGAACCGAT 1136
|| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1046 ACACTTGTTGCGGTTGTGTTTGGAACAGGTAGTAATGCATGTTACTTGGAACGAACTGAT 1105
Query 1137 GCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAATATGGAG 1196
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1106 GCCATAATTAAGTGTCAGGGTCTGCTTACAACTTCTGGGAGCATGGTGGTCAATATGGAG 1165
Query 1197 TGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCA 1256
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1166 TGGGGAAATTTTTGGTCCTCACATTTGCCTAGAACTGCCTATGACATTGACTTGGATGCA 1225
Query 1257 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 GAGAGTTCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGTATCTGGGT 1285
Query 1317 GACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTGGACCCATC 1376
||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||
Sbjct 1286 GACATTGTTCGTAGAGTAATTCTTCGCATGTCACAAGAGTCCGATATCTTTGGACCCATC 1345
Query 1377 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATACATGAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1346 TCGCCCGTGTTATCTGAGCCTTACGTTCTAAGAACAAATTCAGTCTCAGCCATGCATGAA 1405
Query 1437 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGGGTATCAGAT 1496
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1406 GATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACTTGGGGGTATCAGAT 1465
Query 1497 GTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACACGAAGAGCA 1556
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1466 GTACCAGTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGACGTGGTTACAAGAAGAGCA 1525
Query 1557 GGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGC 1616
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1526 GGGAGGCTAGCAGCAGCAGGAATCGCAGGAATCTTGAAGAAGATAGGCCGAGATGGAAGT 1585
Query 1617 GG-GGGAATCACGAGCGGGAGAAGCAGAAGTGAAATCCAAATGCAGAAAAGAACAGTTGT 1675
|| |||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1586 GGAGGGA-TAACGAGCGGGAGAAGCAGAAGCGAAATCCAGATGCAGAAAAGAACAGTTGT 1644
Query 1676 TGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1735
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TGCAGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACATGGAAGAAGC 1704
Query 1736 TCTCGTAGAGATACTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1795
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TCTCGTTGAGATATTAGGAGAAGAAGTGAGTCAATACGTGGTGGTTAAAGCCATGGAAGA 1764
Query 1796 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGTCATGAATCATCATCGT 1855
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1765 TGGTTCTAGCATTGGCTCTGCTCTCCTCGTTGCCTCTTTACAGGCATGAATCATCATCGT 1824
Query 1856 CGTCGTTCGTATTAAATGGTG-ATATAATTGGTTATGTTCGTCCttgtgtgtgtatatag 1914
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1825 CGTCGTTGGTATTAA-TGGTTTATATAATTGGTTATGTTCGTCCTTGTGTGTGTAAATAA 1883
Query 1915 attattcaatatttgtttgttgttaattataattattatt 1954
|||||||||||||||||||||||||||||| ||||| |||
Sbjct 1884 ATTATTCAATATTTGTTTGTTGTTAATTATTATTAT-ATT 1922
> Ahg479523 jgi|Araly1|479523|fgenesh2_kg.3__2224__AT3G20040.1
Length=1970
Score = 1219 bits (660), Expect = 0.0
Identities = 1212/1473 (82%), Gaps = 60/1473 (4%)
Strand=Plus/Plus
Query 370 TTG-CGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCG-CGGTGATGGTTG-GGAGGA 426
||| |||| | ||| | ||| | ||||||||| || || ||||||||| || | ||||
Sbjct 407 TTGACGGCAGCTGCGGCTGTGGTGGCTTGTTC-AATGGCGACGGTGATGG-TGAGAAGGA 464
Query 427 GGATG-AAGAGTCGGAGGAAATGGAGGACTGTTGTTGAG-AT-TTTGAAAGAGTTGGAGG 483
||||| ||| | ||||||| ||||||| | || || | || || || || |||||||
Sbjct 465 GGATGAAAG-GGAGGAGGAAGTGGAGGA-GGGTGGTGGGTATACTT-AAGGATTTGGAGG 521
Query 484 ATGATTGTGATACTCCGGTT-GGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCCGTGGA 541
| | |||||| || || || || |||||||||| || ||||||||||||| || |||||
Sbjct 522 AGGCTTGTGAGACGCC-TTTAGGAAGGTTGAGGC-AGATGGTTGATGCTATAGCTGTGGA 579
Query 542 GATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACTTTCGT 601
|||||| |||||||||| ||||||||| || || |||||||||||||| |||||||| ||
Sbjct 580 GATGCAAGCTGGTTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGCTGCTCACTTTTGT 639
Query 602 CGATGAT-TTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGAGGCA 660
|||||| || |||| || ||| |||| ||| |||||||| || ||||| |||||||||
Sbjct 640 TGATGATCTT-CCCAATGAGAGCGAGAGAGGAACTTATTACGCCCTTCATCTTGGAGGCT 698
Query 661 CTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTTCAAG 720
|||| |||||||| ||| ||||| |||||||| |||||| || | ||| || |||||||
Sbjct 699 CTTACTTTAGGATAATAAAGGTTCATCTGGGTGGTCAAAGATCATCTCTTGAAGTTCAAG 758
Query 721 ATGTTGAACGACA-CCCAATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTT 778
|||||||||| || || ||||| || | ||||||||| ||||||||||||||||| ||
Sbjct 759 ATGTTGAACGGCATTCC-ATACCGACATC-TTTGATGAACAGCACCAGCGAGGTTCTCTT 816
Query 779 CAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGG-AGGAAAACGGGTCCGA-- 835
| |||||||||| | |||||| | |||||||||||||||| ||| |||| | | |
Sbjct 817 CGACTTTCTCGCATCATCCTTGCAGAGGTTTATTGAAAAGGAAGG-GAACGATTTCAATT 875
Query 836 T-TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTT 894
| || ||| ||| | |||||||||||| ||||| || || ||||| |||||||| || |
Sbjct 876 TGTCGCAACCTGTAAAAAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAAACAT 935
Query 895 CTATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTT 953
||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 936 CTATTTCATCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCT 994
Query 954 GGGCAAGATATAGCTGAATGTCTACAAGGAGC-TCTGAACA-GAAGAGGCCTAGATATGC 1011
||| |||| || |||||||||||||||||||| | |||||| || |||| |||||||| |
Sbjct 995 GGGGAAGACATTGCTGAATGTCTACAAGGAGCAT-TGAACAAGA-GAGGGCTAGATATTC 1052
Query 1012 ATGTTGCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTT-GGATATTATCACGAT 1070
||||| ||||||||||||||||||||||| || || || ||| ||| ||| ||| ||
Sbjct 1053 GCGTTGCAGCTCTTGTGAATGATACTGTTGGGGCATTATC-CTTTGGACATTTTCATGAC 1111
Query 1071 CCAGATACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTAC-TTGGAAAG 1129
||||| || ||| || ||||| ||||||||||||||||||||||||||| ||| || |
Sbjct 1112 CCAGACACAATTGCCGCTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTTG-AACG 1170
Query 1130 AACCGATGCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAA 1189
||| |||||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct 1171 AACTGATGCCATAATCAAGTGTCAAAATCCACGCACAACTTCTGGAAGCATGGTGGTCAA 1230
Query 1190 TATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTT 1249
||||||||||||||| |||||||| |||| | |||| |||||||| |||||| |||| ||
Sbjct 1231 TATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTT 1290
Query 1250 GGATGCAGAGAGT-TCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGT 1308
||||||||||||| | || | ||||||| ||||| ||||||||||||||| ||| ||||
Sbjct 1291 GGATGCAGAGAGTATGAATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGT 1349
Query 1309 ATCTGGGTGACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTG 1368
||||||| |||||||| || ||||||||||| || |||||| |||| ||||| |||||||
Sbjct 1350 ATCTGGGCGACATTGTCCGCAGAGTAATTCTTCGAATGTCACAAGAGTCTGACATCTTTG 1409
Query 1369 GACCCATCTCGCCCGTGTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCC 1427
|||||||||| || | |||||| | ||||| ||||| ||||||||||| ||||||||
Sbjct 1410 GACCCATCTCATCCATTTTATCT-ACGCCTTTTGTTCTGAGAACAAATTCTGTCTCAGCA 1468
Query 1428 ATACATGAAGATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGG 1487
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 1469 ATGCATGAAGATGACACATCTGAGTTACAAGAAGTAGCAAGAATTTTGAAAGATTTAGGG 1528
Query 1488 GTATCAGATGTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACA 1547
|| ||||| |||||| |||||||||| ||||| || ||||| ||||||||||| || |||
Sbjct 1529 GTGTCAGAGGTACCATTGAAGGTGAGGAAACTTGTAGTGAAGATATGCGATGTAGTGACA 1588
Query 1548 CGAAGAGCAGGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGA 1607
|| ||||||| ||||| |||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1589 CGCAGAGCAGCTAGGCTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGA 1648
Query 1608 GATGGAAGCGGGGGAATCACGAGCGGGAGAAGC-AGAAGTGAAATCCAAATGCAGAAAAG 1666
||||| || || ||| | || | |||||| | ||| |||| || || |||| |
Sbjct 1649 GATGGGAGTGGAGGAGG-A--AG-G--AGAAGCGATAAGC-AAAT--AA-TG-AGAA--G 1695
Query 1667 AACAGTTGTTGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACAT 1726
|||||| || || |||||||||||| |||| |||| |||| ||||| || ||||| ||
Sbjct 1696 AACAGTGGTGGCAGTAGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATAT 1755
Query 1727 GGAAGAAGCTCTCGTAGAGATA--CTAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAA 1783
||| |||||||| | ||||||| || |||||||| ||| | |||| | || || |||||
Sbjct 1756 GGACGAAGCTCT-G-AGAGATATACTGGGAGAAGATGTG-GCTCAACATGTAGTCGTTAA 1812
Query 1784 AGCCATGGAAGATGGTTCTAGCATTGGCTCTGC 1816
||||||||||||||||| ||||||||||||||
Sbjct 1813 GGCCATGGAAGATGGTTCCAGCATTGGCTCTGC 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78008821760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5