BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50490.1
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923494 jgi|Araly1|923494|scaffold_104775.1 1011 0.0
Ahg479525 jgi|Araly1|479525|fgenesh2_kg.3__2226__AT3G20060.1 614 4e-175
Ahg474176 jgi|Araly1|474176|fgenesh2_kg.1__4130__AT1G50480.1 115 5e-25
> Ahg923494 jgi|Araly1|923494|scaffold_104775.1
Length=585
Score = 1011 bits (547), Expect = 0.0
Identities = 571/583 (98%), Gaps = 0/583 (0%)
Strand=Plus/Plus
Query 156 CGATTAAGAAAGCGAAAGTGATGGCCGCCGTAAATGGATATCAGGGAAATACTCCGGCAG 215
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 CGATTAAGAAAGCGAAAGTGATGGCCGCCGTAAATGGGTATCAGGGAAATACTCCGGCAG 62
Query 216 ATCCTCCGGCGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAGCC 275
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 63 ATCCTCCGGCGTCTAATGGATCTAAACAACCTGCCGCTCCGACCAAGACTGTTGACAGCC 122
Query 276 AATCTGTTCTCAAAAGACTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAG 335
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AATCTGTTCTCAAAAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAG 182
Query 336 GAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAA 242
Query 396 GCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTCTCCAATGACT 455
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 243 GCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGATT 302
Query 456 ATCCTTTCAAGCCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATG 515
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATCCTTTCAAACCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATG 362
Query 516 TCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTACGATGTGA 575
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 363 TCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGTCA 422
Query 576 GGACGATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGA 635
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GGACAATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGA 482
Query 636 ACACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGC 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 ACACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGC 542
Query 696 TTTACAAGCCTCCAAGTGCATGATTTCTGCAAGCTGTTCTGAT 738
| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 543 TCTACAAGCCTCCCAGTGCATGATTTCTGCAAGCTGTTCTGAT 585
> Ahg479525 jgi|Araly1|479525|fgenesh2_kg.3__2226__AT3G20060.1
Length=777
Score = 614 bits (332), Expect = 4e-175
Identities = 571/683 (84%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 56 CTCTTCTCCTTCTTC-T-ACTTTCGAACACTCGTGAATCTGATTCTACTCTAGTCTAATT 113
||||||||||||||| | | ||| || || || ||||||||||||| ||| | || ||
Sbjct 10 CTCTTCTCCTTCTTCTTCAATTTTGATCATTCTTGAATCTGATTCTCCTCGA-TC-AA-- 65
Query 114 GGGTGC-TTTCGATTTCTG-AA-TAAAAATTCGATT-TTGGTCTG-ACGATTAAGAA-A- 166
|| |||| ||||| | || | | | ||||| ||||| || | ||| |||| |
Sbjct 66 --AAGCATTTCAATTTCAGAAATTTCGACTACGATTGTTGGTTTGTTCAATT-AGAAGAG 122
Query 167 GCG--AAAGTGATGGCCG-CCGTAAATGGATATCA-GGGAAATACTCCGGC--AGA-TCC 219
||| |||| ||||| || | |||||||| || || |||||||||||||| || | |
Sbjct 123 GCGAAAAAG-GATGG-CGACGGTAAATGGGTA-CACAGGAAATACTCCGGCGGCGACTAC 179
Query 220 TCCGG-CGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAGCCAAT 278
|||| | | | |||||||| |||||||| ||||||| ||||| || || || ||||
Sbjct 180 GCCGGTAG-CCACCGGATCAAAGCAACCTGCTCCTCCGACTAAGACCGTCGATAGTCAAT 238
Query 279 CTGTTCTCAAAAGACTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAGGAA 338
| || |||||||| |||||||||||| ||||||||||||||||||| |||| ||| || |
Sbjct 239 CCGTCCTCAAAAGGCTGCAATCTGAACTGATGGGCTTGATGATGGGAGGTGATCCGGGGA 298
Query 339 TATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAAGCA 398
|||| ||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 299 TATCTGCTTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATCACAGGAAGCA 358
Query 399 AAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTCTCCAATGACTATC 458
||||||||||||| ||||||||||||||||||||||||||| ||||||| || || ||||
Sbjct 359 AAGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCAAACGATTATC 418
Query 459 CTTTCAAGCCT-CCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATGTC 517
|||| || || ||||| ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 419 CTTTTAAATCTCCCAAA-GTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTC 477
Query 518 TATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTACGATGTGAGG 577
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TATGGCAACATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTACGATGTGAGG 537
Query 578 ACGATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGAAC 637
|||||| |||| || ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 538 ACGATATTACTCTCAATTCAGAGCCTTCTTGGAGAACCGAACATCAGCTCACCATTGAAC 597
Query 638 ACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTT 697
| |||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 598 AATCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTATAGGAAGATGGTTGAGAAGCTC 657
Query 698 TACAAGCCTCCAAGTGCATGATT 720
||||||||| || ||||||||
Sbjct 658 TACAAGCCTTTAAACGCATGATT 680
> Ahg474176 jgi|Araly1|474176|fgenesh2_kg.1__4130__AT1G50480.1
Length=2154
Score = 115 bits (62), Expect = 5e-25
Identities = 76/82 (93%), Gaps = 3/82 (4%)
Strand=Plus/Minus
Query 785 CAGAAGAAAACACTGTCATTCATTTGC-TTTATTCTTTGTTTTTGAACATCAGAAGTTCT 843
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2154 CAGAAGAAAACACTGTCATTCATTTGCTTTTATTCTTTGTTTTTGAACATCCGAAGTTCT 2095
Query 844 ATCTGTAACGTTACCTTGAGTT 865
||||| | ||||||||||||
Sbjct 2094 --CTGTAGCTTTACCTTGAGTT 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34043764881
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5