BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50510.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923497 jgi|Araly1|923497|scaffold_104778.1 1637 0.0
> Ahg923497 jgi|Araly1|923497|scaffold_104778.1
Length=1035
Score = 1637 bits (886), Expect = 0.0
Identities = 977/1021 (96%), Gaps = 5/1021 (0%)
Strand=Plus/Plus
Query 113 GGGAG-AATGGCTTCTTCTT-TAGCTCAATCTAGAATCTCGAATCTCCAGAATCATCTTT 170
||||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 14 GGGAGAAATGGCTTCTTCTTCT-GCTCATTCTAGAATCTCGAATCTCCAGAATCATCTTT 72
Query 171 CACCTCTTGAAGCAAACAACAAGCTCAGGAGTCTGGTCAAGATTTCTCCCCAAGTATCTG 230
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 73 CACCTCTTGAAGCAAACAACAAGCTCAGGAGTCTGGTCAAGATTTCTCCACAAGTATCTG 132
Query 231 AAGCCTTGTCTAATGGACGTGCTGTTGTCGCTCTTGAGTCAACCATTATCTCCCATGGGA 290
||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 133 AAGCCTTATCCAATGGACGCGCTGTGGTGGCTCTTGAGTCAACCATTATCTCCCATGGGA 192
Query 291 TGCCTTACCCTCAAAATCTGCAAACAGCAAAAGAGGTGGAGTCAATTGTGAGAGAAAATG 350
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 193 TGCCTTACCCTCAAAATCTGCAAACAGCAAAAGAGGTGGAGTCAATTGTTAGAGAAAATG 252
Query 351 GAGCAATCCCTGCAACAATTGCTATCCTTAATGGAGTACCTTGCATAGGTCTGAGCGAGG 410
|||| ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 253 GAGCTGTCCCTGCGACAATAGCCATCCTGAATGGAGTACCTTGCATAGGTCTGAGCGAGG 312
Query 411 AAGAACTAGAACGTCTTGCATCTCTCGGAAAAAGTGTCCAAAAGACAGCGGGAAGGGACA 470
||||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||
Sbjct 313 AAGAACTAGAACGTCTTGCATCTCTGGGGAAAAGTGTTCAAAAGACAGCAGGCAGGGACA 372
Query 471 TAGCAAATGTTGTGGCTACAAGAGGAAACGGTGCAACTACAGTCTCTGCAACGTTGTTTT 530
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TAGCACATGTTGTGGCTACAAGAGGAAACGGTGCAACTACAGTCTCTGCAACGTTGTTTT 432
Query 531 TCGCTTCAATGGTTGGCATCCAAGTTTTTGTGACGGGCGGGATAGGTGGTGTCCATAGAC 590
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 433 TCGCTTCAATGGTTGGCATCCAAGTTTTTGTGACGGGTGGGATAGGAGGTGTCCATAGAC 492
Query 591 ATGCCAACCATTCGATGGACATATCATCTGATCTTACTGCACTTGGGAGGACTCCAATAG 650
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 493 ATGCCAACCATACGATGGACATATCATCTGATCTTACTGCACTTGGAAGGACTCCCATAG 552
Query 651 CAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGAATATTTGG 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 CAGTGATATCAGCAGGCGTTAAATCAATACTTGATATTCCAAAGACTCTTGAATATTTGG 612
Query 711 AAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAG 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAG 672
Query 771 AAAAAAGTGGCTGTAAGGCACCTTCCCGTGTAAATAGCCCTGAAGACTGTGCTAGAGTAA 830
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGAAAAGCGGCTGTAAGGCACCTTCCCGTGTAAATAGCCCTGAAGACTGTGCTAGAGTAA 732
Query 831 TAGATGCAAACATGAAGCTAAACCGTCAGGCGGGGATTCTATTTGCCATTCCAATTCCGA 890
||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 733 TAGATGCAAACATGAAGCTAAACCGTCAGGCTGGGATTTTATTTGCTGTTCCAATTCCGA 792
Query 891 AACACCATTCAGCCGCTGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAG 950
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AACAGCATTCAGCTGCCGGAAATCTTATCGAATCAGCAACACAGCGTGCTCTTACAGAAG 852
Query 951 CAAGGGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATG 1010
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CAAGGGAAAAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATG 912
Query 1011 AGTTAACCGGAGGCACATCACTTGCAGCAAACATTGCGCTTGTGAAAAACAATGCCCTTA 1070
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 913 AGTTAACTGGAGGCACGTCACTTGCTGCAAACATTGCGCTTGTGAAAAACAATGCCCTTA 972
Query 1071 TCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGATGTGAGCTTC-CTTATCAATCCCA 1129
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 973 TCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGATGTGAGCTTCACT-ATCAATCTCA 1031
Query 1130 G 1130
|
Sbjct 1032 G 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5