BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50520.1 Length=1754 Score E Sequences producing significant alignments: (Bits) Value Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 1844 0.0 Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419 394 1e-108 > Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 Length=1699 Score = 1844 bits (998), Expect = 0.0 Identities = 1369/1545 (89%), Gaps = 38/1545 (2%) Strand=Plus/Plus Query 123 CTGTGGTCTACCTCCGAGCCCACCCTCTCTACCGGTCATAGGTCATCTTCACCTTCTCCT 182 |||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 133 CTGTGGTCTACCTCTGAGCCCACCATCTCTACCGGTCATAGGTCATCTTCACTTTCTCCT 192 Query 183 CTCTGTTCCATGTCT-CAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTC 241 ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 193 CTCTGTTCCATGT-TACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGCCCCCTCCTTA 251 Query 242 ACCTTCGTGCATTCAATAT-CCCAATAGTTATAGTCTCTTCCGGCTCCATGGCCAACGAA 300 |||||||||| |||||| | |||||| ||| ||||||||||||||| ||||||||||||| Sbjct 252 ACCTTCGTGCCTTCAAT-TCCCCAATTGTTCTAGTCTCTTCCGGCTTCATGGCCAACGAA 310 Query 301 GTTTTGAGGACCCAAGACCTGAACTTTGCTACCCGTCAACGTGAGGTTTCTATAATGGAA 360 || |||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||| Sbjct 311 GTCTTGAAGACCCAAGACCTGAACTTTGCTACCCGTCAACGCGAGGTTCCTATCATGGAA 370 Query 361 AAATCATTACTTTTTGGATCTTTTGGCTTTGTCTCAGCTCCTTATGGAGATTACTGGAGA 420 | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 AGATCACTACTTTTTGGATCTTTTAGCTTTGTCTCAGCTCCTTATGGAGATTACTGGAGG 430 Query 421 TTCATGAAGAAGCTCTTAGTC-ACAAACCTTTTCGGGTCTCATTCCCTCGAGCAGACACG 479 ||||||||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||| Sbjct 431 TTCATGAAGAAGCTCTTAGTCGA-AAAGCTTCTCGGGTCTCATTCGCTCGAGCAGACACG 489 Query 480 GCTCATTCGTG-AGAAAGAACTCAAGACTTTCCGTACTATGTTGTTCGATAAGGCGGCAA 538 || || |||| | ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 490 ACTAATCCGTGCA-AAAGAACTCAAGACTTTCCGTGCTATGTTGTTCGATAAGGCGGCAG 548 Query 539 AGAAGGGGACAGTTGATGTTGGTAAAGAGATGATGAAGCTAACGAATAACAGCATTTGCA 598 |||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 549 AGAAGGAGACTGTTGATGTGGGTAAAGAGATGATGAAGCTAACGAATAATAGCATTTGCA 608 Query 599 GGATGATAATGGGGAGGAGGTGTTCAGAGGAGAACAGTGAAGCAGAGA-AAGTCGAA--G 655 |||||||||||||||||| |||||||||||||||| |||||||||| | |||| || | Sbjct 609 GGATGATAATGGGGAGGAAGTGTTCAGAGGAGAACGGTGAAGCAGA-ACAAGT--AAGGG 665 Query 656 ACTTGGTGATCAAATCATTTAGTTTGGTGAAGAAGGTCCTTATAGCTAACACGGTTGGTC 715 ||||||| ||||||| ||||||||| ||||||| |||||||||||| || || |||| Sbjct 666 GTTTGGTGACCAAATCACTTAGTTTGGCGAAGAAGTTCCTTATAGCTAGCATTGTCGGTC 725 Query 716 GACTTCTCAAGAAGTTTGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGA 775 || || ||||| | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 GATTTTTCAAGCTGGTCGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGA 785 Query 776 GGTACGATGAATTGCTGGAAAAAATTATTAAAGAACACGAAGAGGATCCGAACAAGAAAG 835 ||| |||||||||||||| || ||||| || ||||||||||| ||||| ||||||||| Sbjct 786 TGTATGATGAATTGCTGGAGAAGATTATGAAGGAACACGAAGAAAATCCGGACAAGAAAG 845 Query 836 AGGATAGAGACATGATGGATGTTCTGTTGGAAGTTTGTGCAGACGACAAGGCTGAGGTTA 895 || ||| ||||||||||||||||||||| |||||||||||||| || || || || || Sbjct 846 AGAATATAGACATGATGGATGTTCTGTTAGAAGTTTGTGCAGATGATAACGCCGAATTTC 905 Query 896 AGATTACCAGGAACCAAATCAAAGCGCTTATTGTGGAGCTTTTCCTTGGAGGCACTGATA 955 ||||| ||||||| ||||||||||| ||| |||||||||||||| ||| ||||||||||| Sbjct 906 AGATTTCCAGGAATCAAATCAAAGCACTTTTTGTGGAGCTTTTCATTGCAGGCACTGATA 965 Query 956 CTTCAGCACAAACAATACAGTGGATAATGGCCGAACTCATTAACCATCCCGAGATTCTTA 1015 ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 966 CTTCAGCACAAACAACACAGTGGATAATGGCAGAACTCATTAACCATCCTGAGATTCTTA 1025 Query 1016 AAATATTAAGAGAAGAGATAGAATCTGTTGTCGGA-ACAACGAGGTTTATTCAAGAAACA 1074 ||| | | ||| |||||||||||||||| || || | |||||| ||||||||||||||| Sbjct 1026 AAAGACTGAGAAAAGAGATAGAATCTGTCGTTGGGGA-AACGAGATTTATTCAAGAAACA 1084 Query 1075 GATCTCTCAAACCTGCCGTATTTGCAGGCTGTGATGAAAGAAGGACAAAGACTACACCCA 1134 |||||| | | ||||||| || |||||||||||||||||||| | |||||||||||| Sbjct 1085 GATCTCCCCAGTTTGCCGTACTTACAGGCTGTGATGAAAGAAGGGCTAAGACTACACCCG 1144 Query 1135 CATTCGCCAATGTTGGTGAGGAATGCAACCA-AAGGATGCAAGATTGGAGGGTACTACAT 1193 ||| ||||||| |||| |||||||||||| | ||||||||||||| |||||||| ||||| Sbjct 1145 CATACGCCAATCTTGGCGAGGAATGCAAC-AGAAGGATGCAAGATCGGAGGGTATTACAT 1203 Query 1194 ACCGCAGAACACAACGATGCTAATAAACACCTATGC-GATGATGATAGATCCAGATTCAT 1252 | |||||||||||| ||| |||||||| | ||||| | || ||| |||||| ||||||| Sbjct 1204 AGGGCAGAACACAACAATGATAATAAACGCTTATGCAG-TGCTGAGAGATCCGGATTCAT 1262 Query 1253 GGGAAAATCCAG-ACAAGTTTCAGCCCGAGAGGTTCATGG-TGTCTCCTTCAAAAGGGAA 1310 ||||| |||||| | || |||||||||||||| |||||| | ||||||||||||||||| Sbjct 1263 GGGAATATCCAGGAGAA-TTTCAGCCCGAGAGATTCATGACT-TCTCCTTCAAAAGGGAA 1320 Query 1311 AGACGATGAGAGAGAACAGCTAGCTTTGAACTTCATTCCTTTCGGGAGCGGAAGAAGAGC 1370 ||| |||||||||| |||| |||||||||||| ||||||||||||||| |||||||||| Sbjct 1321 AGAAGATGAGAGAGCACAGTTAGCTTTGAACTACATTCCTTTCGGGAGTGGAAGAAGAGG 1380 Query 1371 ATGTC-CAGGAGAAAAA-TTGGGCTATCTCTTCACT-GGAGTAGCCATTGGAACAATGGT 1427 ||||| | ||| ||||| ||||||||| |||||| | ||||||||||||||||||||||| Sbjct 1381 ATGTCTC-GGA-AAAAACTTGGGCTATATCTTCA-TAGGAGTAGCCATTGGAACAATGGT 1437 Query 1428 ACAGTGTTTTGACTGGATAATCGATGGAGATAAGGTTAACGTGGAAGAGGCTGGAGAAAT 1487 ||||||||||| |||| |||| | |||||||||||| || |||||||| | || ||||| Sbjct 1438 GCAGTGTTTTGATTGGAAAATCAACGGAGATAAGGTTTACATGGAAGAGACGGGGGAAAT 1497 Query 1488 GACGCTGAC-CATGGCTCATCCACTTAAATGCACTCCTGTGACTCGAGTTAACCCATTAG 1546 | ||||| | |||||||||||||||||||||||||||||| |||||| |||||||| | Sbjct 1498 GGCGCTG-CGCATGGCTCATCCACTTAAATGCACTCCTGTTACTCGAATTAACCCA---G 1553 Query 1547 CTAGCTTTGAATCTGAAGATCCTAAGTGGTTGATGGAGGAGTTTGATATGTATTGTTGAA 1606 ||||||||||||||| ||||| | ||| | |||||||||||||||||||| |||||||| Sbjct 1554 CTAGCTTTGAATCTGCAGATCTTTAGT--T-GATGGAGGAGTTTGATATGTCTTGTTGAA 1610 Query 1607 GTTGCAGACATATGTCTGAAACTAATAATGGAACATGCTGTCTTT 1651 ||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1611 GTTGCAGACATATGTCTGAAAGTAATAATGGAACTTGCTGTCTTT 1655 Score = 124 bits (67), Expect = 2e-27 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 1 ACAATGGCAGCAATCACCGTTGACTTTCAGctctgcttcatcttcatcctcctaggaatc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 59 ACAATGGCAGCAATCACCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAGGGCTC 118 Query 61 ttctcactcttct 73 ||||||||||||| Sbjct 119 TTCTCACTCTTCT 131 > Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419 Length=567 Score = 394 bits (213), Expect = 1e-108 Identities = 250/268 (93%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 4 ATGGCAGCAATCACCGTTGACTTTCAGctctgcttcatcttcatcctccta-ggaatctt 62 ||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||| Sbjct 1 ATGGCAGCAATCACCGTTGACTTTCAGATCTGCTTCATTTTCATCCTCCTATGG-CCCTT 59 Query 63 ctcactcttctgtctctctgctttcttcttcaAGAAACCAAAAGACCCACAACTTCAAGG 122 ||||||||||||||| | || |||||||||||||||||||||||| |||| ||||||||| Sbjct 60 CTCACTCTTCTGTCTATATGGTTTCTTCTTCAAGAAACCAAAAGAGCCACGACTTCAAGG 119 Query 123 CTGTGGTCTACCTCCGAGCCCACCCTCTCTACCGGTCATAGGTCATCTTCACCTTCTCCT 182 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 120 CTGTGGTCTACCTCCGAGCCCACCATCTCTACCAGTCATAGGTCATCTTCACCTTCTCCT 179 Query 183 CTCTGTTCCATGTCTCAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTCA 242 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTCTGTTCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTCA 239 Query 243 CCTTCGTGCATTCAATATCCCAATAGTT 270 |||||| || ||||||||| |||||||| Sbjct 240 CCTTCGCGCTTTCAATATCTCAATAGTT 267 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65819943360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5