BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50520.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 1844 0.0
Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419 394 1e-108
> Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1
Length=1699
Score = 1844 bits (998), Expect = 0.0
Identities = 1369/1545 (89%), Gaps = 38/1545 (2%)
Strand=Plus/Plus
Query 123 CTGTGGTCTACCTCCGAGCCCACCCTCTCTACCGGTCATAGGTCATCTTCACCTTCTCCT 182
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 133 CTGTGGTCTACCTCTGAGCCCACCATCTCTACCGGTCATAGGTCATCTTCACTTTCTCCT 192
Query 183 CTCTGTTCCATGTCT-CAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTC 241
||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 193 CTCTGTTCCATGT-TACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGCCCCCTCCTTA 251
Query 242 ACCTTCGTGCATTCAATAT-CCCAATAGTTATAGTCTCTTCCGGCTCCATGGCCAACGAA 300
|||||||||| |||||| | |||||| ||| ||||||||||||||| |||||||||||||
Sbjct 252 ACCTTCGTGCCTTCAAT-TCCCCAATTGTTCTAGTCTCTTCCGGCTTCATGGCCAACGAA 310
Query 301 GTTTTGAGGACCCAAGACCTGAACTTTGCTACCCGTCAACGTGAGGTTTCTATAATGGAA 360
|| |||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 311 GTCTTGAAGACCCAAGACCTGAACTTTGCTACCCGTCAACGCGAGGTTCCTATCATGGAA 370
Query 361 AAATCATTACTTTTTGGATCTTTTGGCTTTGTCTCAGCTCCTTATGGAGATTACTGGAGA 420
| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 AGATCACTACTTTTTGGATCTTTTAGCTTTGTCTCAGCTCCTTATGGAGATTACTGGAGG 430
Query 421 TTCATGAAGAAGCTCTTAGTC-ACAAACCTTTTCGGGTCTCATTCCCTCGAGCAGACACG 479
||||||||||||||||||||| | ||| ||| ||||||||||||| ||||||||||||||
Sbjct 431 TTCATGAAGAAGCTCTTAGTCGA-AAAGCTTCTCGGGTCTCATTCGCTCGAGCAGACACG 489
Query 480 GCTCATTCGTG-AGAAAGAACTCAAGACTTTCCGTACTATGTTGTTCGATAAGGCGGCAA 538
|| || |||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 490 ACTAATCCGTGCA-AAAGAACTCAAGACTTTCCGTGCTATGTTGTTCGATAAGGCGGCAG 548
Query 539 AGAAGGGGACAGTTGATGTTGGTAAAGAGATGATGAAGCTAACGAATAACAGCATTTGCA 598
|||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 549 AGAAGGAGACTGTTGATGTGGGTAAAGAGATGATGAAGCTAACGAATAATAGCATTTGCA 608
Query 599 GGATGATAATGGGGAGGAGGTGTTCAGAGGAGAACAGTGAAGCAGAGA-AAGTCGAA--G 655
|||||||||||||||||| |||||||||||||||| |||||||||| | |||| || |
Sbjct 609 GGATGATAATGGGGAGGAAGTGTTCAGAGGAGAACGGTGAAGCAGA-ACAAGT--AAGGG 665
Query 656 ACTTGGTGATCAAATCATTTAGTTTGGTGAAGAAGGTCCTTATAGCTAACACGGTTGGTC 715
||||||| ||||||| ||||||||| ||||||| |||||||||||| || || ||||
Sbjct 666 GTTTGGTGACCAAATCACTTAGTTTGGCGAAGAAGTTCCTTATAGCTAGCATTGTCGGTC 725
Query 716 GACTTCTCAAGAAGTTTGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGA 775
|| || ||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GATTTTTCAAGCTGGTCGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGA 785
Query 776 GGTACGATGAATTGCTGGAAAAAATTATTAAAGAACACGAAGAGGATCCGAACAAGAAAG 835
||| |||||||||||||| || ||||| || ||||||||||| ||||| |||||||||
Sbjct 786 TGTATGATGAATTGCTGGAGAAGATTATGAAGGAACACGAAGAAAATCCGGACAAGAAAG 845
Query 836 AGGATAGAGACATGATGGATGTTCTGTTGGAAGTTTGTGCAGACGACAAGGCTGAGGTTA 895
|| ||| ||||||||||||||||||||| |||||||||||||| || || || || ||
Sbjct 846 AGAATATAGACATGATGGATGTTCTGTTAGAAGTTTGTGCAGATGATAACGCCGAATTTC 905
Query 896 AGATTACCAGGAACCAAATCAAAGCGCTTATTGTGGAGCTTTTCCTTGGAGGCACTGATA 955
||||| ||||||| ||||||||||| ||| |||||||||||||| ||| |||||||||||
Sbjct 906 AGATTTCCAGGAATCAAATCAAAGCACTTTTTGTGGAGCTTTTCATTGCAGGCACTGATA 965
Query 956 CTTCAGCACAAACAATACAGTGGATAATGGCCGAACTCATTAACCATCCCGAGATTCTTA 1015
||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 966 CTTCAGCACAAACAACACAGTGGATAATGGCAGAACTCATTAACCATCCTGAGATTCTTA 1025
Query 1016 AAATATTAAGAGAAGAGATAGAATCTGTTGTCGGA-ACAACGAGGTTTATTCAAGAAACA 1074
||| | | ||| |||||||||||||||| || || | |||||| |||||||||||||||
Sbjct 1026 AAAGACTGAGAAAAGAGATAGAATCTGTCGTTGGGGA-AACGAGATTTATTCAAGAAACA 1084
Query 1075 GATCTCTCAAACCTGCCGTATTTGCAGGCTGTGATGAAAGAAGGACAAAGACTACACCCA 1134
|||||| | | ||||||| || |||||||||||||||||||| | ||||||||||||
Sbjct 1085 GATCTCCCCAGTTTGCCGTACTTACAGGCTGTGATGAAAGAAGGGCTAAGACTACACCCG 1144
Query 1135 CATTCGCCAATGTTGGTGAGGAATGCAACCA-AAGGATGCAAGATTGGAGGGTACTACAT 1193
||| ||||||| |||| |||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 1145 CATACGCCAATCTTGGCGAGGAATGCAAC-AGAAGGATGCAAGATCGGAGGGTATTACAT 1203
Query 1194 ACCGCAGAACACAACGATGCTAATAAACACCTATGC-GATGATGATAGATCCAGATTCAT 1252
| |||||||||||| ||| |||||||| | ||||| | || ||| |||||| |||||||
Sbjct 1204 AGGGCAGAACACAACAATGATAATAAACGCTTATGCAG-TGCTGAGAGATCCGGATTCAT 1262
Query 1253 GGGAAAATCCAG-ACAAGTTTCAGCCCGAGAGGTTCATGG-TGTCTCCTTCAAAAGGGAA 1310
||||| |||||| | || |||||||||||||| |||||| | |||||||||||||||||
Sbjct 1263 GGGAATATCCAGGAGAA-TTTCAGCCCGAGAGATTCATGACT-TCTCCTTCAAAAGGGAA 1320
Query 1311 AGACGATGAGAGAGAACAGCTAGCTTTGAACTTCATTCCTTTCGGGAGCGGAAGAAGAGC 1370
||| |||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1321 AGAAGATGAGAGAGCACAGTTAGCTTTGAACTACATTCCTTTCGGGAGTGGAAGAAGAGG 1380
Query 1371 ATGTC-CAGGAGAAAAA-TTGGGCTATCTCTTCACT-GGAGTAGCCATTGGAACAATGGT 1427
||||| | ||| ||||| ||||||||| |||||| | |||||||||||||||||||||||
Sbjct 1381 ATGTCTC-GGA-AAAAACTTGGGCTATATCTTCA-TAGGAGTAGCCATTGGAACAATGGT 1437
Query 1428 ACAGTGTTTTGACTGGATAATCGATGGAGATAAGGTTAACGTGGAAGAGGCTGGAGAAAT 1487
||||||||||| |||| |||| | |||||||||||| || |||||||| | || |||||
Sbjct 1438 GCAGTGTTTTGATTGGAAAATCAACGGAGATAAGGTTTACATGGAAGAGACGGGGGAAAT 1497
Query 1488 GACGCTGAC-CATGGCTCATCCACTTAAATGCACTCCTGTGACTCGAGTTAACCCATTAG 1546
| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 1498 GGCGCTG-CGCATGGCTCATCCACTTAAATGCACTCCTGTTACTCGAATTAACCCA---G 1553
Query 1547 CTAGCTTTGAATCTGAAGATCCTAAGTGGTTGATGGAGGAGTTTGATATGTATTGTTGAA 1606
||||||||||||||| ||||| | ||| | |||||||||||||||||||| ||||||||
Sbjct 1554 CTAGCTTTGAATCTGCAGATCTTTAGT--T-GATGGAGGAGTTTGATATGTCTTGTTGAA 1610
Query 1607 GTTGCAGACATATGTCTGAAACTAATAATGGAACATGCTGTCTTT 1651
||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1611 GTTGCAGACATATGTCTGAAAGTAATAATGGAACTTGCTGTCTTT 1655
Score = 124 bits (67), Expect = 2e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ACAATGGCAGCAATCACCGTTGACTTTCAGctctgcttcatcttcatcctcctaggaatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 59 ACAATGGCAGCAATCACCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAGGGCTC 118
Query 61 ttctcactcttct 73
|||||||||||||
Sbjct 119 TTCTCACTCTTCT 131
> Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419
Length=567
Score = 394 bits (213), Expect = 1e-108
Identities = 250/268 (93%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 4 ATGGCAGCAATCACCGTTGACTTTCAGctctgcttcatcttcatcctccta-ggaatctt 62
||||||||||||||||||||||||||| |||||||||| |||||||||||| || |||
Sbjct 1 ATGGCAGCAATCACCGTTGACTTTCAGATCTGCTTCATTTTCATCCTCCTATGG-CCCTT 59
Query 63 ctcactcttctgtctctctgctttcttcttcaAGAAACCAAAAGACCCACAACTTCAAGG 122
||||||||||||||| | || |||||||||||||||||||||||| |||| |||||||||
Sbjct 60 CTCACTCTTCTGTCTATATGGTTTCTTCTTCAAGAAACCAAAAGAGCCACGACTTCAAGG 119
Query 123 CTGTGGTCTACCTCCGAGCCCACCCTCTCTACCGGTCATAGGTCATCTTCACCTTCTCCT 182
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 CTGTGGTCTACCTCCGAGCCCACCATCTCTACCAGTCATAGGTCATCTTCACCTTCTCCT 179
Query 183 CTCTGTTCCATGTCTCAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTCA 242
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTCTGTTCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTCA 239
Query 243 CCTTCGTGCATTCAATATCCCAATAGTT 270
|||||| || ||||||||| ||||||||
Sbjct 240 CCTTCGCGCTTTCAATATCTCAATAGTT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5