BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50560.1
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 2026 0.0
Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419 355 6e-97
> Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1
Length=1699
Score = 2026 bits (1097), Expect = 0.0
Identities = 1385/1523 (91%), Gaps = 23/1523 (2%)
Strand=Plus/Plus
Query 188 CTGCGGTCTACCTCCGAGCCCACCGTCTCTACCGATCATTGGTCATCTTCACTTTCTCCT 247
||| |||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||
Sbjct 133 CTGTGGTCTACCTCTGAGCCCACCATCTCTACCGGTCATAGGTCATCTTCACTTTCTCCT 192
Query 248 CTCTGTTCCATGTTACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCTTCCTTCA 307
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 193 CTCTGTTCCATGTTACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGCCCCCTCCTTAA 252
Query 308 CCTCCGCGCTTTCAATATCCCTA-TAGTTCTAGTCTCGTCGGGCTCCATGGCCAACGAAG 366
||| || || |||||| |||| | | ||||||||||| || |||| ||||||||||||||
Sbjct 253 CCTTCGTGCCTTCAAT-TCCCCAATTGTTCTAGTCTCTTCCGGCTTCATGGCCAACGAAG 311
Query 367 TTTTGAGGATCCAAGACCTGAACTTTGCTAGCCGTGATAGCGGGCAGACTCCTATAATGG 426
| |||| || |||||||||||||||||||| |||| | | || | || |||||| ||||
Sbjct 312 TCTTGAAGACCCAAGACCTGAACTTTGCTACCCGTCA-A-CGCG-AGGTTCCTATCATGG 368
Query 427 AAAAATCATTACTTTTTGGATCTTTTGGCTTTGTCTCAGTTCCTTATGGAGATTACTGGA 486
||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 369 AAAGATCACTACTTTTTGGATCTTTTAGCTTTGTCTCAGCTCCTTATGGAGATTACTGGA 428
Query 487 GATTCATGAAGAAGCTCTTAGTCAAAAAACTTCTCGGGTCTCATTCCCTCGAGCAGACAC 546
| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 429 GGTTCATGAAGAAGCTCTTAGTCGAAAAGCTTCTCGGGTCTCATTCGCTCGAGCAGACAC 488
Query 547 GGCTCCTCCGTGGGAAAGAACTCCAA-ACTTTCCGTGCTATGTTGTTTGATAAGGCGGCA 605
| || |||||| ||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 489 GACTAATCCGTGCAAAAGAACTC-AAGACTTTCCGTGCTATGTTGTTCGATAAGGCGGCA 547
Query 606 AAGAATGAGACTGTTGACGTTGGTAAAGAGATGATGAAGCTAACGAACAACAGCATTTGC 665
|||| ||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 548 GAGAAGGAGACTGTTGATGTGGGTAAAGAGATGATGAAGCTAACGAATAATAGCATTTGC 607
Query 666 AGGATGACAATGGGGAGGA-GCTGTTCAGAGGAGAACGGTGAAGCAGAGCAAGTCAGGGG 724
||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 608 AGGATGATAATGGGGAGGAAG-TGTTCAGAGGAGAACGGTGAAGCAGAACAAGTAAGGGG 666
Query 725 TTTGGTGACCAAATCACTTAGTTTGACGAAGAAGTTCCTCATAGCTAGCATTGTTGGTCA 784
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 667 TTTGGTGACCAAATCACTTAGTTTGGCGAAGAAGTTCCTTATAGCTAGCATTGTCGGTCG 726
Query 785 ATTTTCCAAGCTGGTCGGGATCTCTTTGTTTGGGAAGGAAATCATGGAGGTCTCGCAGAG 844
||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 727 ATTTTTCAAGCTGGTCGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGAT 786
Query 845 GTACGATGAATTGCTGGAGAAAATTATTAAGGAACACGAAGAAAATCCCAACAATGGA-G 903
||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| | | |
Sbjct 787 GTATGATGAATTGCTGGAGAAGATTATGAAGGAACACGAAGAAAATCCGGACAA-GAAAG 845
Query 904 AGGATAGAGACATGATGGATGTTCTATTGGAAGTTTGTGCAGATGACAACGCCGAGTTTA 963
|| ||| |||||||||||||||||| || ||||||||||||||||| |||||||| |||
Sbjct 846 AGAATATAGACATGATGGATGTTCTGTTAGAAGTTTGTGCAGATGATAACGCCGAATTTC 905
Query 964 AGATTTCCAGGAACCAAATCAAAGCACTTTTTGTGGAGATTTTCCTTGCAGGCACTGATA 1023
||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 906 AGATTTCCAGGAATCAAATCAAAGCACTTTTTGTGGAGCTTTTCATTGCAGGCACTGATA 965
Query 1024 CTTCAGCACAAACAATACAGTGGATATTGGCAGAACTCATTAACCATCCCGAGATTCTTG 1083
||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 966 CTTCAGCACAAACAACACAGTGGATAATGGCAGAACTCATTAACCATCCTGAGATTCTT- 1024
Query 1084 AAAAGT-TGAGAAAAGAGATAGAATCTGTTGTTGGGGTTAGGAGACTGATTCAAGAAACA 1142
||||| |||||||||||||||||||||| ||||||| | |||| | ||||||||||||
Sbjct 1025 AAAAGACTGAGAAAAGAGATAGAATCTGTCGTTGGGGAAACGAGATTTATTCAAGAAACA 1084
Query 1143 GATCTCCCCAACCTGCCGTATTTACAGGCTGTGATGAAAGAAGGGCTAAGACTACACCCG 1202
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GATCTCCCCAGTTTGCCGTACTTACAGGCTGTGATGAAAGAAGGGCTAAGACTACACCCG 1144
Query 1203 CATACGCCAATCTTGGTGAGGAATGCAACAGAAGGATGCAAGATCGGAGGGTATTACATA 1262
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CATACGCCAATCTTGGCGAGGAATGCAACAGAAGGATGCAAGATCGGAGGGTATTACATA 1204
Query 1263 GGGCAGAACACAACAATGATGGTAAACGCTTATGCGGTGCTGAGAGATCCGGATTCATGG 1322
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1205 GGGCAGAACACAACAATGATAATAAACGCTTATGCAGTGCTGAGAGATCCGGATTCATGG 1264
Query 1323 GAATATCCAGAAGAATTTCAGCCCGAGAGGTTCATGACTTCTCCTTTAAAAGGGAAAGAA 1382
|||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1265 GAATATCCAGGAGAATTTCAGCCCGAGAGATTCATGACTTCTCCTTCAAAAGGGAAAGAA 1324
Query 1383 GATGAGAAAGCACAGCTAGCCTTGAACTTCATTCCTTTCGGGAGTGGAAGAAGAGGATGT 1442
||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1325 GATGAGAGAGCACAGTTAGCTTTGAACTACATTCCTTTCGGGAGTGGAAGAAGAGGATGT 1384
Query 1443 CTCGGAAAAAACTTGGGTTATATCTTCATGGGAGTAGCCATTGGAACAATGGTGCAGGGT 1502
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1385 CTCGGAAAAAACTTGGGCTATATCTTCATAGGAGTAGCCATTGGAACAATGGTGCAGTGT 1444
Query 1503 TTTGATTGGAGAATCAATGGAGATAAGGTTAACATGGAAGAGACTGGAGAAATGACGCTG 1562
|||||||||| |||||| |||||||||||| ||||||||||||| || |||||| |||||
Sbjct 1445 TTTGATTGGAAAATCAACGGAGATAAGGTTTACATGGAAGAGACGGGGGAAATGGCGCTG 1504
Query 1563 AC-CATGGCTCATCCACTTAAATGCATTCCTGTTGCTCGAATCAACCCAGCTAGCTTTGA 1621
| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||
Sbjct 1505 -CGCATGGCTCATCCACTTAAATGCACTCCTGTTACTCGAATTAACCCAGCTAGCTTTGA 1563
Query 1622 -TCCTT-AG-T-TG-A-T-GATGGAGGAGTATGATATGTCTTGTTGAAGTTGCAGACATA 1674
|| | || | | | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1564 ATC-TGCAGATCTTTAGTTGATGGAGGAGTTTGATATGTCTTGTTGAAGTTGCAGACATA 1622
Query 1675 TGTCTCAAACTGATAATGGAACT 1697
||||| ||| | |||||||||||
Sbjct 1623 TGTCTGAAAGTAATAATGGAACT 1645
Score = 176 bits (95), Expect = 5e-43
Identities = 125/138 (91%), Gaps = 7/138 (5%)
Strand=Plus/Plus
Query 1 GATCTAAAGAGTACATATAATAAAACCAGTCTGCTTCATCTAACCCTCTCTGCAGTTTTT 60
||||||||||||||||||||||||| ||||||| | | | |||||||||||||||||
Sbjct 1 GATCTAAAGAGTACATATAATAAAATCAGTCTG---C-T-T--CCCTCTCTGCAGTTTTT 53
Query 61 AGACAACAATGGCAGCAATCAGCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAG 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 54 GGACAACAATGGCAGCAATCACCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAG 113
Query 121 CAATCTTCTCACTCTTCT 138
|||||||||||||||
Sbjct 114 GGCTCTTCTCACTCTTCT 131
Score = 71.3 bits (38), Expect = 3e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1941 AAGAGATTATGAAACTTTAGTACTAAATTGGAAAAGTTGCAGAT 1984
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1656 AAGAGATTGCGAAACTTTAGTACTAAATTGGAAAAGTTGCAGAT 1699
> Ahg914165 jgi|Araly1|914165|Al_scaffold_0001_4419
Length=567
Score = 355 bits (192), Expect = 6e-97
Identities = 247/273 (90%), Gaps = 6/273 (2%)
Strand=Plus/Plus
Query 69 ATGGCAGCAATCAGCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTA--GCAATCT 126
||||||||||||| ||||||||||||| |||||||||| |||||||||||| || ||
Sbjct 1 ATGGCAGCAATCACCGTTGACTTTCAGATCTGCTTCATTTTCATCCTCCTATGGC--CCT 58
Query 127 TCTCACTCTTCTGTTTCTCTGCTTTCTTCTTCAAGAAACCAAAAGACCCACAACTTCAAG 186
|||||||||||||| | | || |||||||||||||||||||||||| |||| ||||||||
Sbjct 59 TCTCACTCTTCTGTCTATATGGTTTCTTCTTCAAGAAACCAAAAGAGCCACGACTTCAAG 118
Query 187 GCTGCGGTCTACCTCCGAGCCCACCGTCTCTACCGA-TCATTGGTCATCTTCACTTTCTC 245
|||| |||||||||||||||||||| |||||||| | |||| |||||||||||| |||||
Sbjct 119 GCTGTGGTCTACCTCCGAGCCCACCATCTCTACC-AGTCATAGGTCATCTTCACCTTCTC 177
Query 246 CTCTCTGTTCCATGTTACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCTTCCTT 305
|| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 CTTTCTGTTCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTT 237
Query 306 CACCTCCGCGCTTTCAATATCCCTATAGTTCTA 338
||||| ||||||||||||||| | |||||||||
Sbjct 238 CACCTTCGCGCTTTCAATATCTCAATAGTTCTA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74580699710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5