BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50570.1
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314445 jgi|Araly1|314445|fgenesh1_pm.C_scaffold_1003225 1796 0.0
Ahg923499 jgi|Araly1|923499|scaffold_104780.1 449 2e-125
Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1 63.9 3e-09
> Ahg314445 jgi|Araly1|314445|fgenesh1_pm.C_scaffold_1003225
Length=2019
Score = 1796 bits (972), Expect = 0.0
Identities = 1111/1179 (94%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 181 GATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTG 240
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 844 GATCCTGTTATGGAGTCTCCACAGTCTGAGGCATCAATCGTCAATGGTAGTATCCATTTG 903
Query 241 AATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTCGTCTGATTCAGACAGTTTC 300
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 904 AATGGCAGTGGTGAAACCAAAACAAAGAATCTGGTCATGTCGTCTGATTCAGACAGTTTA 963
Query 301 ATCGGTGTGCTTGAGGTTTTTGTTCACCAAGCTAGGGACATCCACAACATCTGTATCTAT 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 964 ATCGGTAAGCTTGAGGTTTTTGTTCACCAAGCTAGGGACATCCACAACATCTGCATCTAT 1023
Query 361 CATAAGCAAGATGTGTATGCTAAGCTTTGTCTCACAAATGATCCCGAAAACTCCTTGTCC 420
||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct 1024 CATAAGCAAGATGTGTATGCTAAGCTTTGTCTCACAAGCAATCCCGAGAGCTCTTTGTCC 1083
Query 421 ACAAAGATCATCAATGGTGGAGGGCA-AAACCCTGTCTTCGACGATACCCTTCAGTTCGA 479
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 1084 ACAAAGATCATCAATGGTGGAGGG-AGAAACCCTGTCTTCGACGATACCCTTCACTTCGA 1142
Query 480 CGTTAAGAA-CCTGGATTGTTCGCTTAAGTGTGAGATATTTATGATGAGCCGCGTGAAGA 538
||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1143 CGTGAAGAATCC-GGATTGTTCGCTTAAGTGTGAGATATATATGATGAGCCGCGTGAAGA 1201
Query 539 ATTATCTTGAGGATCAGTTACTTGGATTCTCTCTTGTACCTTTGTCTGAAGTGATTGTGA 598
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1202 ATTATCTTGAGGATCAGTTACTTGGATTCACTCTTGTACCTTTGTCTGAAGTGATTGTGA 1261
Query 599 GGAATGGGAAATTGGAGAAAGAGTTCTCCCTTTCTTCAACCGATTTGTATCACTCTCCTG 658
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1262 GGAATGGGAAATTGGAGAAAGAGTTCTCTCTTTCGTCAACCGATTTGTATCACTCTCCTG 1321
Query 659 CAGGTTTTGTCGAGTTGTCTCTCTCGTACGCAGGAGATTCGCCTGACGTGATGCATATTC 718
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1322 CAGGTTTTGTTGAGTTGTCTCTCTCGTACGCAGGAGATTCGCCCGACGTGATGCACATTC 1381
Query 719 CTGCGGTTCCAACTGCGGATGAGACCGAGTTGGCTCCTATCGAGTTTGATGAGAGTGAGT 778
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CTGCGGTGCCAACTGCAGATGAGACCGAGTTGGCTCCTATCGAGTTTGATGAGAGTGAGT 1441
Query 779 TTTTGGATCCAAAGATTGTCTGTGAAAACAATCAAATGGTGTCTAAGTACTTCTCCACTA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1442 TTTTGGATCCAAAGATTGTCTGTGAAAACAATCAAATGGTGTCTAAGTACTTTTCCACTA 1501
Query 839 CGTGTTCTGATTCTGATGATTTTGCAAGCTCTGAAACTGGCTTTGTGGAAGTAAACAGCA 898
| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 1502 CTTGTTCTGATTCTGATGAATTCGCAAGCTCTGAAACCGGCTTTGTGGAAGTAAACAGCA 1561
Query 899 TCCTGTCTGCAGTTGTTGAAACTGCTGTTGACGAAGCAGCACCGGCCAATTCTGTCTCAA 958
||| ||||||||||||||| ||||||||||| ||||||| |||| | ||| |||||||||
Sbjct 1562 TCCAGTCTGCAGTTGTTGACACTGCTGTTGAAGAAGCAGGACCGACGAATACTGTCTCAA 1621
Query 959 CAAATGGAATCTCATCTCCATCAACTGCAGTTAGCTCTGGC-TCCTCGGGAACTCATGAT 1017
|||||| |||||| |||||||||| ||| || ||||| ||| ||||||||||||||||||
Sbjct 1622 CAAATGAAATCTCTTCTCCATCAATTGCTGTGAGCTC-GGCTTCCTCGGGAACTCATGAT 1680
Query 1018 GTTTCAAAGCAATCTAGTGAAGGAAACAACTCAGATTCAGAACAAGAAGCGAAGAAGCCA 1077
| |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1681 GATTCAAAGCAATCAAGCGAAGGAAACAACTCAGGTTCAGAACAAGAAGCGAAGAAGCCA 1740
Query 1078 ACAGATATCATCAAGAGTGGTGATTTAGATAAGACTGATGAAGAAGCAGTTGTGAAACCG 1137
|||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1741 ACAGATATCATCAAGAATGGTGATTTAGATAAGACGGGTGATGAAGCAGTTGTGAAACCA 1800
Query 1138 GTTCTGACAGTGAACATTGAACCAGAGCAAAAGGTAGTGCAACAAGATATTGTTGACATG 1197
|||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1801 GTTCTGACAGCGAATATTGAACCAGAGCACAAGGTAGTGCAGCAAGATATTGTTGACATG 1860
Query 1198 TACACAAAAAGCTTGCAGCAATTCACTGAGTCACTGGCTAAGATGAAACTTCCTTTGGAC 1257
||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1861 TACACGAAAAGCTTGCAGCAATTTACTGAATCACTGGCTAAGATGAAACTCCCTTTGGAC 1920
Query 1258 ATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCAGCAGACGCCAAAGAGTGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 ATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCAGCAGACGCCAAAGAGTGCT 1980
Query 1318 AGCTCCCGTGTTTTCTACGGGAGTAGAGCCTTCTTCTGA 1356
||||||||||| |||||||| ||||||||||||||||||
Sbjct 1981 AGCTCCCGTGTGTTCTACGGTAGTAGAGCCTTCTTCTGA 2019
> Ahg923499 jgi|Araly1|923499|scaffold_104780.1
Length=350
Score = 449 bits (243), Expect = 2e-125
Identities = 291/314 (93%), Gaps = 4/314 (1%)
Strand=Plus/Plus
Query 1061 AAGAAGCGAAGAAGCCAACAGATATCATCAAGAGTGGTGATTTAGATAAGACTGATGAAG 1120
||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||||| |
Sbjct 34 AAGAAGCGAAGAAGCCAACAGGTATCATCAAGAATGGTGATTTAGATAAGGCGGATGATG 93
Query 1121 AAGCAGTTGTGAAACCGGTTCTGACAGTGAACATTGAACCAGAGCAAAAGGTAGTGCAAC 1180
||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||| |
Sbjct 94 AAGCAGTAGTGAAACCGGTTCTGTCAGTGAGCATTGAACCAGAGCAAAAGGAAGTGCAGC 153
Query 1181 AAGATATTGTTGACATGTACACAAAAAGCTTGCAGCAAT-TCACTGAGTCACTGGCTAAG 1239
|||||||||||||||||||||| |||||||||||||||| | ||||| |||||| ||||
Sbjct 154 AAGATATTGTTGACATGTACACGAAAAGCTTGCAGCAATAT-ACTGAATCACTGTTTAAG 212
Query 1240 ATGAAACTTC-CTTTGGACATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCA 1298
||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 213 ATGAAAC-TCGCTTTGGACATCGATAGCCCGACCCCATCAGAGAACTCAAGCTCCTCCCA 271
Query 1299 GCAGACGCCAAAGAGTGCTAGCTCCCGTGTTTTCTACGGGAGTAGAGCCTTCTTCTGAAG 1358
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 272 GCAGACGCCAAAGAGTGCTAGCTCCCGTGTGTTCTACGGTAGTAGAGCCTTCTTCTGAAG 331
Query 1359 CTCAGAAATCATCT 1372
||| ||||||||||
Sbjct 332 CTCGGAAATCATCT 345
> Ahg474180 jgi|Araly1|474180|fgenesh2_kg.1__4134__AT1G50560.1
Length=1699
Score = 63.9 bits (34), Expect = 3e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1484 ATCTGCAACTTTTCCAATTTAGTACTAAAGTTTC 1517
||||||||||||||||||||||||||||||||||
Sbjct 1699 ATCTGCAACTTTTCCAATTTAGTACTAAAGTTTC 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5