BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50580.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474186 jgi|Araly1|474186|fgenesh2_kg.1__4140__AT1G50580.1 1020 0.0
> Ahg474186 jgi|Araly1|474186|fgenesh2_kg.1__4140__AT1G50580.1
Length=1293
Score = 1020 bits (552), Expect = 0.0
Identities = 636/678 (94%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 670 GGTCCAATGCTCCCTGAACCGCAAAATAAGAGTGGTAAATTTCTAGAAGACCGATGGAAT 729
|||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||
Sbjct 616 GGTCCAATGCTCCCTGAACCTCAAAATAAGAGTGGTAAACCTCTGGAAGACCGATGGAAT 675
Query 730 CACTGGTTAAACGGATTTGAACCAGGGTCGGTAGTGTTTTGTGCGTTTGGCACTCAATTC 789
||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 676 CACTGGTTAAACGTATTCGAACCAGGCTCGGTAGTGTTTTGTGCGTTTGGAACTCAATTC 735
Query 790 TTTTTCGAGAAGGATCAATTTCAAGAATTCTGTTTAGGAATGGAGCTAATGGGTCTACCG 849
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 736 TTTTTCGAGAAGGATCAATTCCAAGAATTCTGTTTAGGAATGGAGCTAACGGGTCTACCG 795
Query 850 TTTTTAATATCGGTTATGCCGCCAAAAGGCTCACCAACGGTTCAAGAAGCGTTACCAAAA 909
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 796 TTTTTAATAGCGGTTATGCCGCCAAAAGGCTCATCAACGGTTCAAGAAGCGTTACCAGAA 855
Query 910 GGATTCGAAGAACGGGTTAAAAAGCATGGAATCGTTTGGGAAGGATGGTTGGAACAACCT 969
||||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 856 GGATTTGAAGAACGGGTTAAAGGGCGTGGAATCGTTTGGGAAGGATGGGTGGAACAACCT 915
Query 970 TTGATATTGTCTCATCCATCAGTAGGTTGCTTTGTGAACCATTGTGGCTTTGGTTCAATG 1029
||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 916 TTGATATTGTCTCATCCATCAGTAGGTTGCTTTGTGAACCACTGTGGGTTCGGTTCAATG 975
Query 1030 TGGGAGTCTTTGGTTAGTGATTGTCAGATTGTGTTTATTCCACAATTGGCAGATCAAGTT 1089
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 976 TGGGAGTCTTTGGTTAGTGATTGCCAGATTGTGTTTATCCCACAATTGGCTGATCAAGTT 1035
Query 1090 CTCATCACAAGATTGTTGACTGAAGAACTCGAAGTCTCTGTGAAAGTGCAGAGAGAAGAT 1149
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 1036 CTCATCACAAGATTGTTGACTGAAGAACTCCAAGTCTCAGTGAAGGTGCAGAGAGAAGAT 1095
Query 1150 TCCGGATGGTTCTCGAAAGAGGACTTGAGAGATACTGTTAAATCTGTGATGGATATAGAT 1209
||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1096 TCCGGATGGTTCTCGAAGGAGAACTTGCGAGATACGGTTAAATCTGTGATGGATAGAGAT 1155
Query 1210 AGTGAGATTGGGAACTTAGTGAAGAGGAATCATAAGAAATTGAAAGAGACTTTAGTTAGT 1269
||||||||||| || |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1156 AGTGAGATTGGAAATTTAGTGAAGAAGAATCATAAGAAATTGAAAGATACTTTGGTTAGT 1215
Query 1270 CCTGGATTGTTAAGTGGTTATGCTGATAAGTTTGTAGAAGCATTGGAGATTGAAGTCAAC 1329
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1216 CCTGGATTGTTGAGTGGTTGTGCTGATAAGTTTGTAGAAGCATTGGAGAATGAAGTCAAC 1275
Query 1330 AACACCAAATTTTCTTGA 1347
||||| |||| |||||||
Sbjct 1276 AACACAAAATCTTCTTGA 1293
Score = 998 bits (540), Expect = 0.0
Identities = 592/618 (96%), Gaps = 0/618 (0%)
Strand=Plus/Plus
Query 1 ATGGGATCAAAATTTCATGCTTTTATGTATCCATGGTTTGGTTTTGGTCATATGATTCCA 60
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGTCAAAATTTCATGCTTTTATGTACCCATGGTTTGGTTTTGGTCATATGATTCCA 60
Query 61 TATCTTCATTTAGCCAACAAACTAGCTGAGAAAGGTCATAGGGTCACTTTCTTCCTCCCC 120
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 61 TATCTTCATCTAGCCAACAAACTAGCTGAGAAAGGTCATACCATCACTTTCTTCCTTCCC 120
Query 121 AAGAAAGCTCATAAGCAGCTCCAACCTCTCAATCTGTTCCCAGACAGCATTGTCTTTGAG 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 AAGAAAGCTCATAAGCAGCTCCAACCTCTCAATCTGTTCCCAGACAGTATTGTCTTGGAG 180
Query 181 CCTCTTACTCTCCCTCCTGTCGATGGTCTCCCTTTTGGCGCCGAGACAGCCTCGGATCTC 240
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCTTTCTCTCCCTCCTGCCGACGGTCTCCCTTTTGGCGCCGAGACAGCCTCGGATCTC 240
Query 241 CCAAACTCAACTAAGAAACCCATATTCGTTGCCATGGATCTCTTACGCGATCAGATCGAA 300
||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 241 CCAAACTCAACTAAGAAACCCATTTTCCTTGCCATGGATCTCCTACGCGATCAGATCGAA 300
Query 301 GCAAAGGTCCGTGCTTTGAAACCAGATCTAATCTTTTTCGATTTTGTTCATTGGGTTCCA 360
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAAGGTCCTTGCTTTGAAACCAGATCTAATCTTTTTCGATTTTGTTCATTGGGTTCCA 360
Query 361 GAAATGGCAGAAGAGTTTGGAATAAAGAGTGTCAATTACCAGATCATATCGGCAGCTTGT 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAATGGCAAAAGAGTTTGGAATAAAGAGTGTCAATTACCAGATCATATCGGCAGCTTGT 420
Query 421 GTAGCTATGGTTCTTGCACCTAGGGCTGAATTAGGGTTTCCTCCGCCGGATTATCCTTTA 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GTAGCTATGGTTCTTGCACCTAGTGCTGAATTAGGGTTTCCTCCGCCGGATTATCCTTTA 480
Query 481 TCCAAAGTGGCGTTACGTGGACATGAAGCTAACGTCTGTTCTCTCTTTGCGAATTCCCAT 540
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 481 TCCAAAGTGGCGTTAAGTGGACATGACGCTAACGTCTGTTCTCTCTTTGCAAATTCACAT 540
Query 541 GAGCTTTTCGGTCTGATCACCAAAGGCCTTAAGAACTGTGACGTCGTTTCCATAAGGACC 600
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGCTTTTTGGTCTGATTACCAAAGGCCTTAAGAACTGTGACGTCGTTTCCATAAGGACT 600
Query 601 TGCGTGGAACTTGAAGGT 618
||||||||||||||||||
Sbjct 601 TGCGTGGAACTTGAAGGT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5