BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50590.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314447 jgi|Araly1|314447|fgenesh1_pm.C_scaffold_1003227 1520 0.0
> Ahg314447 jgi|Araly1|314447|fgenesh1_pm.C_scaffold_1003227
Length=936
Score = 1520 bits (823), Expect = 0.0
Identities = 899/936 (96%), Gaps = 3/936 (0%)
Strand=Plus/Plus
Query 1 ATGCCAATCTCAGAGAAATCTTCTGCTA-CTA--ATACGAGGTTAGTTGTTAAGAAGCTT 57
|||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1 ATGCCAATCTTAGAGAAATCTTCTGCTATTTATGATAAGAGGTTAGTTGTTAAGAAGCTT 60
Query 58 TTCGCCAGACAGCTACATGAAGGATTTGGTGCTGTTGTAAGAAGAAGCATCGGAAGGTTT 117
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGCAAGACAGCAACACGAAGGATTTGGTGCTGTTGTAAGAAGAAGCATCGGAAGGTTT 120
Query 118 GAGTTCAGATACTTCGACCCATTTCTTGTCCTGGATGAATTCTCAGTTTCAGCTCCTGCA 177
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GAGTTCAGATACTTGGACCCATTTCTTGTGTTGGATGAATTCTCAGTTTCAGCTCCTGCA 180
Query 178 GGATTCCCAGATCATCCACACAGAGGATTTGAGACAGTCACTTACATGTTAGAGGGAGAG 237
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGATTCCCAGATCATCCTCACAGAGGATTTGAGACAGTCACTTACATGTTAGAGGGAGAA 240
Query 238 ATTTTGCATGAAGACTGTGAAGGACACAAAGGAGTAATAAGAGAAGGAGGATTACAATGG 297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTTTGCATGAAGACTGCGAAGGACACAAAGGAGTAATAAGAGAAGGAGGATTACAATGG 300
Query 298 ATGACTGCAGGAAAAGGCATTGTTCATTCTGAAATGCCTTCTTCTAATTCCAATGGCATT 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGACTGCAGGCAAAGGCATTGTTCATTCTGAAATGCCTTCTTCTAATTCCAATGGCATT 360
Query 358 ACTCACAACAAGGGCTTGCAGCTTTGGATCAATCTCTCCTCAAGACAAAAACTAGTGGAG 417
||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 361 ACTCATAACAAGGGCTTGCAGCTTTGGATCAATCTCTCCTCAAAACACAAATTAGTGGAG 420
Query 418 CCGAGTTATCAAGAGATAGAGAGTAAAGACATAGCAGAAACAGAGAAAGATGGTGTGAGA 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGAGTTATCAAGAGATAGAGAGTAAAGACATAGCAGAAACAGAGAAAGATGGTGTGAGG 480
Query 478 GTTAGAGTCATAGCAGGAGAATGGAATGGAGTTAAGTCAAAGATCTGCACAAGAACGCCA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GTTAGAGTCATAGCAGGAGAATGGAATGGAGTTAAGTCAAAGATCTGCACAAGAACACCA 540
Query 538 ACAATGTATTTAGACTTCACTCTCTCGCCGGGTTCTCGAATCTCTCAACCCATTCCACTT 597
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ACAATGTATTTAGACTTCACTCTCTCGCCGGGTTCTCGAATCTCTCAGCCCATTCCACTT 600
Query 598 CACTGGAACGCGTTTGTCTATGTTCTTCAAGGCCATGGTCACTTTGGGGATTCCAAGTTA 657
|| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 601 CATTGGAACGCGTTTGTCTATGTTCTTCAAGGCCAGGGCCATTTTGGGGATTCCAAGTTA 660
Query 658 CAACATTCAGCCGCTGCTGCGCACCACTTGCTGGTTCTAGGCCTAGGTGGTGACATGTTA 717
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 661 CAACATTCAGCCGCTGCCGCGCACCACTTGCTGGTTCTAGGCCTAGGTGGTGACCGGTTA 720
Query 718 GAGGCTTGGAACGGTTCTGATTCCGGTTTGCCTCTTCGGTTTATCCTTGTGGCTGGTGAG 777
||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 721 GAGGCGTGGAACGGCTCTGATTCCAGTTTGCCACTTCGGTTTATCCTTGTGGCTGGTGAG 780
Query 778 CCTATAGGTGAACCAATGGTTCAGTTTGGTCCTTTTGTTATGAACACACAAGAAGAGATT 837
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CCTATAGGTGAACCAATGGTTCAGTTTGGTCCCTTTGTTATGAACACACAAGAAGAGATT 840
Query 838 GATGAGACCATTGACGACTTTGAGAATTTTAGAAATGGGTTTGAAAAAGCTAGACATTGG 897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATGAGACCATTGACGATTTTGAGAATTTTAGAAATGGGTTTGAAAAAGCTAGACATTGG 900
Query 898 AAGTCTCAAGCTGCTTCTGCCTTGGGACTGTTCTGA 933
||||||||||||||||||||||||||| ||||||||
Sbjct 901 AAGTCTCAAGCTGCTTCTGCCTTGGGATTGTTCTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5