BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50610.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1 3537 0.0
Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1 1014 0.0
> Ahg474192 jgi|Araly1|474192|fgenesh2_kg.1__4146__AT1G50610.1
Length=2305
Score = 3537 bits (1915), Expect = 0.0
Identities = 2196/2328 (94%), Gaps = 34/2328 (1%)
Strand=Plus/Plus
Query 5 ATCAAATCGATTCCATTGCGCGTGTAACCGCAATGCGCAATTGGGAGGACCCGTTTACGC 64
||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1 ATCGAATCGATTCCATTGCGCGTGTAACCGCAATGCGAAATTGGGAGAACCCGTTTACGC 60
Query 65 TTGCGTGTAACACGGCCTTGAAGAAGAATCTACCTTCTTGCA-TTTTCATCATCATCTTT 123
|||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 61 TTGCGTGTAACACGGCGTTGAAGAAGAATCTACCTTCTTGCATTTTTC-TCATCATCTTT 119
Query 124 ATCAGCGTGTTATGTCCGGTGGCAATGTCTCAGGTGGTTGTGCCGGATTCAGATGCAGAT 183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCAGCGTGTTATGTCCGGTCGCAATGTCTCAGGTGGTTGTGCCGGATTCAGATGCAGAT 179
Query 184 TGTCTCTTGCGATTCAAAGATACATTAGCAAATGGTTCAGAATTT-CGTAGTTGGGATCC 242
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 180 TGTCTCTTGAGATTCAAAGATACATTAGCAAATGGTTCAGAATTTAC-TAGTTGGGATCC 238
Query 243 ATTATCATCACCATGTCAAGGAAATACAGCAAATTGGTTTGGTGTTCTTTGTAGCAATTA 302
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 239 ATTAACATCACCATGTCAAGGAAACACAGCAAATTGGTTTGGTGTTCTTTGTAGCAATTA 298
Query 303 CGTTTGGGGATTACAACTTGAGGGAATGGGTTTGACCGGGAAACTAAACCTCGACCCATT 362
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 299 CGTTTGGGGATTACAACTCGAGGGAATGGGTTTGACTGGGAAATTAAACCTCGACCCATT 358
Query 363 GGTTCCAATGAAGAATCTGCGAACCATAAGCTTCATGAACAATAACTTCAATGGCCCAAT 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGTTCCTATGAAGAATCTGCGAACCATAAGCTTCATGAACAATAACTTCAATGGCCCAAT 418
Query 423 GCCTCAAGTTAAGAGGTTTACTTCGCTGAAATCTTTGTATTTGTCTAATAACCGGTTTTC 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCCTCAAGTTAAGAGGTTTACTTCGCTGAAATCTTTGTATTTGTCTAATAACCGGTTTTC 478
Query 483 GGGGGAGATACCCGCAGATGCATTTCTAGGTATGCCACTTTTGAAGAAAATTTTGCTGGC 542
||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 479 GGGGGAGATACCCGCGGATGCATTTCGAGGTATGCCACTTTTGAAGAAAATTTTGTTGGC 538
Query 543 TAATAACGCATTCCGAGGAACAATTCCTTCTTCTCTAGCCTCTTTGCCAATGCTTTTAGA 602
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 539 GAATAACGCGTTCCGAGGAACAATTCCTTCTTCTCTGGCCTCATTGCCAATGCTTTTAGA 598
Query 603 GTTGAGGCTAAATGGTAATCAATTTCAAGGGCAAATACCATCTTTTCAACAGAAGGATCT 662
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 GTTGAGGCTAAATGGTAATCAATTTCAAGGGCAAATACCATCTTTTCAACAAAAGGATCT 658
Query 663 TAAATTAGCTAGCTTTGAAAACAATGATCTCGATGGACCGATACCTGAAAGTCTTCGAAA 722
|||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 659 TAAACTAGCTAGCTTTGAAAACAATGATCTTGATGGACCGATACCCGAAAGCCTTCGAAA 718
Query 723 CATGGATCCAGGCTCTTTTGCAGGTAACAAAGGTTTGTGTGATGCTCCCTTAAGTCCATG 782
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 CATGGATCCAGGCTCTTTTGCAGGTAACAAAGATTTGTGTGATGCTCCCTTAAGTCCATG 778
Query 783 TTCCTCTTCCTCTCCGGGGGTTCCTGTTGTTCCGGTATCTCCCGTTGATCCAAAATCTAC 842
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 TTCCCCTTCCTCTCCGGGAGTTCCTGTTGTTCCGGTATCTCCTGTTGATCCAAAATCTAC 838
Query 843 TTCTCCTCCCACGGGGAAAAAGGCCGGATCTTTTTACACTCTAGCAATCATTTTGATTGT 902
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCTCCTTCCACGGGGAAAAAGACCGGATCTTTTTACACTCTAGCAATCATTTTGATTGT 898
Query 903 TATTGGCATAATACTAGTGATCATCGCGCTTGTGTTCTGTTTCGTTCAATCAAGAAGACG 962
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 899 TATTGGCATAATACTAGTGATCATCGCGCTTGTGTTCTTTTTCGTTCAAACAAGAAGACG 958
Query 963 TAATTTCTTGTCAGCTTATCCTTCTTCTGCGGGAAAAGAAAGGATAGAGAGCTATAATTA 1022
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 959 AAATTTCTTGTCAGCTTATCCTTCAGCTG-G--AAAAGAAAGGATAGAGAGCTATAATTA 1015
Query 1023 TCATCAATCCACAAACAAGAACAATAAACCCGCAGAATCCGTA---AATCACACAAGGAG 1079
|||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1016 TCATCAATCCGCAAGCAAGAACAATAAACCCGCGGAATCCGTTGTGAATCACACAAGGAG 1075
Query 1080 AGGATCGATGCCTGATCCAGGAGGAAGGCTTCTATTCGTGAGG-GACGATATTCAAAGAT 1138
|||||| ||||||||||||||||||||||||||||| || | | ||||| ||||||||||
Sbjct 1076 AGGATCAATGCCTGATCCAGGAGGAAGGCTTCTATTTGT-ACGAGACGACATTCAAAGAT 1134
Query 1139 TCGATCTTCAAGATCTTTTGAGAGCTTCAGCTGAAGTTCTTGGTAGCGGAACATTTGGTG 1198
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1135 TCGGTCTTCAAGATCTTTTGAGAGCTTCAGCTGAAGTTCTTGGTAGTGGAACATTTGGTG 1194
Query 1199 CTTCATACAAAGCAGCGATATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATA 1258
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CTTCATACAAAGCCGCGATATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATA 1254
Query 1259 TGAACAATGTCGGAAGAGATGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTAAACC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGAACAATGTCGGAAGAGATGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTAAACC 1314
Query 1319 ATCCAAATATATTGCCTCTCGTTGCTT-ACTATTACCGTAGAGAGGAGAAGCTTCTAGTC 1377
|||| ||||||||||||||||| |||| ||||||||| ||| || ||||||||||| ||
Sbjct 1315 ATCCGAATATATTGCCTCTCGTCGCTTTACTATTACC--AGA-AG-AGAAGCTTCTAATC 1370
Query 1378 ACTGAATTTATGCCCAACAGTAGCTTGGCAAGCCATCTTCATGCGAATAATTCCGCTGGA 1437
||| |||| ||||| || ||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1371 ACTCAATTAATGCCTAATAGTAGCTTGGCAAACCATCTTCATGCGAATCATTCCGCTGGA 1430
Query 1438 TTGGATTGGATAACACGTTTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTG 1497
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TTGGATTGGATAACACGTCTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTG 1490
Query 1498 TTTGACGAGCTT-CCAACACTAACAATCCCTCATGGTCATATGAAGTCATCGAATATTGT 1556
|| |||||| || ||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 1491 TTCGACGAG-TTACCAACACTAACGATACCTCATGGTCATATAAAGTCATCGAACATTGT 1549
Query 1557 TTTAGACGATTCATTCGAGCCATTGTTAACAGATTACGCTCTAAGACCTATGATGAGCTC 1616
||||||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1550 TTTAGACGAATCATTTGAACCATTGTTAACAGATTACGCTCTTAGACCGGTGATGAGCTC 1609
Query 1617 AGAGCACGCACATAACTTCATGACAGCTTACAAATCGCCAGAGTATAGACCTTCGAAAGG 1676
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1610 AGAGCACGCACATAACTTCATGACAGCGTACAAATCGCCAGAGTATAGACCATCGAAAGG 1669
Query 1677 ACAAATCATAACGAAGAAGACAGATGTTTGGTGTTTTGGTGTGTTGATCTTGGAAGTTTT 1736
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1670 GCAAGTCATAACGAAGAAGACAGATGTTTGGTGTTTCGGTGTGTTGATCTTGGAAGTTTT 1729
Query 1737 GACAGGAAGATTCCCTGAAAATTACTTAACGCAAGGTTATGATTCTAACATGAGTCTTGT 1796
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1730 GACAGGGAGATTCCCTGAAAATTACTTAACGCAAGGTTATGATTCGAACATGAGTCTTGT 1789
Query 1797 GACTTGGGTTAACGATATGGTTAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAAAT 1856
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GACTTGGGTGAACGATATGGTCAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAAAT 1849
Query 1857 GAAAGGGAAGAAGAATTGTAAAGCGGAAATGATTAATTTGTTGAAAATTGGTTTGAGATG 1916
|||||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1850 GAAAGGAAAAAAGAATTGTAAAGCGGAAATGATCAATTTGTTGAAAGTTGGTTTGAGATG 1909
Query 1917 TTGCgaagaagaagaagagaggaggat-ggatatgagagaagttgtggagatggttgaga 1975
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 1910 CTGCGAAGAAGAAGAAGAGAGGAG-ATTGGACATGAGAGAAGTTGTGGAGATGGTTGAGA 1968
Query 1976 tgttgagagaaggagaaTCTGAAGATGATTTTGGTTCTATGGATCATCGAGGGACTCATA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TGTTGAGAGAAGGAGAATCTGAAGATGATTTTGGTTCTATGGATCATCGAGGGACTCATA 2028
Query 2036 ATAATGTGTATTCTTCCATGTTGTTAGACGATGATGACTTTGGTTTCTCGATGAATCGAT 2095
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 ATAATTTATATTCTTCCATGTTGTTAGACGATGATGACTTTGGTTTCTCGATGAATCGAT 2088
Query 2096 GAG--TTTCAGATTTTCGGTTGCTTTTAGGAATATTGAAAAAGTTTCaaaaaaaGGTGGT 2153
||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||
Sbjct 2089 GAGAGTTTCAGATTTTCGGTTTCTTTTAGGAATATTGAAAAAGTTTTAAAAAA-GGTGAA 2147
Query 2154 TATTCCGGCGGAAGTAGCTTCACCGGAGCCGGAGGGAAGAATGAAGAACATGTGCTTGGT 2213
||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2148 TATTCCGGCAGAAGTAGCTTCACCGGAGCCGGAGAGAAGAATGAAGAACATGCGCTTGGT 2207
Query 2214 TTTTCTTCTTTTTAAGGTTAATGCAGATAAAAAATGTATGAGAATGTAATGGACTAAAAC 2273
|||||||||| ||| ||| ||||||||||| || | | ||| ||||||||||||||
Sbjct 2208 TTTTCTTCTTCTTACGGTCAATGCAGATAA----TG-A-GC-AAT-TAATGGACTAAAAC 2259
Query 2274 ATGTAAATATATTATGTATCTGTATTAATGTATATTACCATCATCATC 2321
||||| |||||||||||||||||||| ||||| | ||||||||||||
Sbjct 2260 ATGTA--TATATTATGTATCTGTATTACTGTATGTCACCATCATCATC 2305
> Ahg479539 jgi|Araly1|479539|fgenesh2_kg.3__2240__AT3G20190.1
Length=2237
Score = 1014 bits (549), Expect = 0.0
Identities = 1469/1894 (78%), Gaps = 139/1894 (7%)
Strand=Plus/Plus
Query 172 TCAGATGCAGATTGTCTCTTGCGATTCAAAGATACATTAGCAAATGGTTCAGAAT--TTC 229
||||| ||||||||||||||| |||||||||||| || | |||| || | | ||
Sbjct 204 TCAGACGCAGATTGTCTCTTGAAATTCAAAGATACTTTGGTTAATGCATC-G-TTCATTA 261
Query 230 GTAGTTGGGATCCATT--ATCATCACCATGTCAAG-GAAA-TACAGCA-AATTGGTTTGG 284
| ||||||||||| || ||| || || ||| ||| |||| | | | | |||||||| ||
Sbjct 262 GCAGTTGGGATCC-TTCCATC-TCCCCGTGT-AAGCGAAACT-C-GGAGAATTGGTTCGG 316
Query 285 TGTTCT-T-TG-TAGCAATTACGTTTGGGGATTACAACTTGAGGGAATGGGTTTGACCGG 341
||||| | || || | | | |||||||| ||||||| || |||||||| || ||| |
Sbjct 317 CGTTCTCTGTGTTACCGGTAATGTTTGGGGCCTACAACTCGAAGGAATGGGGTTAACC-G 375
Query 342 GAAA-CTAAACCTCGACCCATTGGTTCCAATGAAGAATCTGCGAACCATAAGCTTCATGA 400
|||| ||| |||| || ||||| | ||| || |||||||| |||||| ||||||||||||
Sbjct 376 GAAAGCTAGACCTTGAACCATTAGCTCCGATCAAGAATCTACGAACCTTAAGCTTCATGA 435
Query 401 ACAATAACTTCAATGGCCCAATGCC-TCAAGTTAAGAGGT-TTACTTCGCTGAAATCTTT 458
||||||| || || || ||||||| || || |||| | | | || |||| || ||
Sbjct 436 ACAATAAATTTAACGGTTCAATGCCATC-TGTCAAGA-ATCTCGGTGCGTTGAAGTCATT 493
Query 459 GTATTTGTCTAATAACCGGTTTTCGGGGGAGATACCCGCAGATGCATTTCTA-GGTATGC 517
||| |||||||| ||||||||| | |||||||||||||| ||||| ||| | ||||||
Sbjct 494 GTACTTGTCTAACAACCGGTTTACAGGGGAGATACCCGCCGATGCGTTT-GATGGTATG- 551
Query 518 CA-CTTTTGAAGAAAATTTTGCTGGCTAATAACGCA-TTCCGAGGAACAATTCCTTCTTC 575
|| | ||||||||| || || ||||||| |||||| ||| | ||||| || ||||||||
Sbjct 552 CATCATTTGAAGAAGCTTCTGTTGGCTAACAACGCATTTCGGGGGAAC-ATCCCTTCTTC 610
Query 576 TCTAGCCTCTTTGCCAATGCTTTTAGAGTTGAGGCTAAATGGTAATCAATTTCAAGGGCA 635
| |||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||
Sbjct 611 TTTAGCTTCTTTGCCAATGCTTTTAGAGTTGAGGGTAAATGGGAATCAGTTTCATGGGCA 670
Query 636 AATACCAT-CTTTTCAACAGAAGGATCTTAAATTAGCTAGCTTTGAAAACAATGATCTCG 694
|||||| | |||| |||||||||||||||| || |||||||| ||||||||||| ||||
Sbjct 671 AATACC-TGATTTTAAACAGAAGGATCTTAAGTTGGCTAGCTTCGAAAACAATGACCTCG 729
Query 695 ATGGACCGATACCTGAAAGTCTTCGAAACATGGATCCAGGCT-CTTTTGCAGGTAACAAA 753
| ||||| ||||| | ||| ||| | || |||||||| |||| ||||| |||| ||| ||
Sbjct 730 AGGGACCTATACCGGGAAGCCTTAGCAATATGGATCCTGGCTCCTTTT-CAGGGAAC-AA 787
Query 754 G-GTTTGTGT-GATGCTCC-CTTAAGTCCATGTTCCTCTTCCTCTCCGGGGGTTCCTGTT 810
| |||||| || |||| | |||| ||||||| | | | | | ||| | | ||
Sbjct 788 GAACTTGTGTGGA-CCTCCAC-TAAGCCCATGTT-CGAGTGAT-T-C--GGGAT-C--TT 837
Query 811 GTTCCGGTATCTCCCGTTGATCCAAAATCTACTTCTCCTCCCACGGGGAAAAAG-GCCGG 869
||||| ||||||| | |||| || || | | | ||| ||| ||
Sbjct 838 -CTCCGG-ATCTCCC-----T------TCTA-GTC-CCACGGA-GAAGAACAAGAACC-A 880
Query 870 ATCTTT-TTACACTC-TAGCAATCATTTTGATTGTTATTGGCATAATACTAG-TGATCAT 926
|||||| || ||| | | || || || ||||||||||||| |||||||| | |||||||
Sbjct 881 ATCTTTCTT-CAC-CATTGCTATTGTTCTGATTGTTATTGGGATAATACT-GATGATCAT 937
Query 927 CGCGCTTGTGTTCTGTTTCGTTCAAT-CAAGAAGAC-GTAATTTCTTGTCAGCTTATCCT 984
|||||||| ||||| || || || | |||| || | ||| | ||||| || |||||
Sbjct 938 TTCGCTTGTGGTCTGTATCCTT-GATACCAGAAAACGGAAATCT-TTGTCGGCCTATCCA 995
Query 985 TCTTCTGCGGGAAAAGAAAGGATAGAGAGCTATAATTATC-ATCAATCCACAAACAAGAA 1043
|| | ||||| | || |||| ||||| || ||||| | |||||||||| ||||| |
Sbjct 996 TC--C-GCGGGTCAGGACAGGACAGAGAAATACAATTA-CGATCAATCCACGGACAAGGA 1051
Query 1044 CAATAAACCCGCAGAATCCGT-A--AATCACAC-A--AGGAGAGGATCGA-TGCCTGATC 1096
| ||| ||||||| || || | | | |||| | ||||| ||| | | | || |||
Sbjct 1052 C---AAAGCCGCAGATTCTGTCACGAGTTACACTAGTAGGAGGGGAGC-AGTACCAGAT- 1106
Query 1097 CAGGAGGAAGGCTTCTATTCGTG-AGGGACGATATTCAAAGATTCGATCTTCAAGATCTT 1155
||| | || ||| | || || | || || ||||| ||||| || ||||||||||||
Sbjct 1107 CAGAATAAACTCTTGT-TT-TTGCA-AGATGACATTCAGAGATTTGACCTTCAAGATCTT 1163
Query 1156 -TTGAGAGCTTCAGCTGAAGTTCTTGGTAGCGGAA-CATTTGGTGCTTCATACAAAGCAG 1213
|| ||||| || |||||||||||||| || |||| | ||||||||||| || ||| | |
Sbjct 1164 CTT-AGAGCCTCTGCTGAAGTTCTTGGGAGTGGAAGC-TTTGGTGCTTCTTATAAAACTG 1221
Query 1214 CGATATCTAGTGGACAAACATTGGTTGTGAAGAGGTATAAACATATGAACAATGTCGGAA 1273
|||| ||| ||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 1222 GGATAAATAGCGGACAGACGCTGGTCGTGAAGAGGTATAAACATATGAACAATGTCGGAA 1281
Query 1274 GAGATGAGTTTCATGAGCATATGAGACGGTTAGGGAGATTAAACCATCCAAATATATTGC 1333
|||| ||||||||||| ||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 1282 GAGAGGAGTTTCATGACCATATGAGACGGTTAGGGAGATTGAACCATCCAAATCTGTTGC 1341
Query 1334 CTCTCGTTGCTTACTATTACCGTAGAGAGGAGAAGCTTCTAG-TCACTGAATTTATGCCC 1392
|| | || || ||||||||||| ||||| |||||||| || | || |||| || |||||
Sbjct 1342 CTATTGTGGCATACTATTACCGCAGAGAAGAGAAGCT-CTTGATCGCTGAGTTCATGCCA 1400
Query 1393 AA-CAGTAGCTTGGCAAGCCATCTTCATGCGAATAATTCCG-----C----TGGATTGGA 1442
|| | |||||||||||||||||||||| |||||| |||| | | |||||||||
Sbjct 1401 AATC-GTAGCTTGGCAAGCCATCTTCACGCGAATCATTCTGTTGATCAACCTGGATTGGA 1459
Query 1443 TTGGATAACACGTTTAAAGATCATAAAAGGAGTAGCAAAGGGTTTATCTTACTTGTTTGA 1502
|||| |||| | ||||||| ||| ||||||| || ||||||||| ||||||||| |
Sbjct 1460 TTGGCCAACAAGGGTAAAGATTATACAAGGAGTGGCTAAGGGTTTAGGTTACTTGTTCAA 1519
Query 1503 CGAGCTTCCAACACTAACAATCCCTCATGGTCATATGAAGTCATCGAATATTGTTTTAGA 1562
|||||| |||| |||||||||||||| |||||| | ||||||||||| |||| || ||
Sbjct 1520 CGAGCTAACAACCCTAACAATCCCTCACGGTCATCTCAAGTCATCGAACGTTGTATTGGA 1579
Query 1563 CGATTCATTCGAGCCAT-TGTTAACAGATTACGCTCTAAGACCTATGATGAGCTCAGAGC 1621
||| ||||||||||| | | ||||| ||||| || |||||||| |||||| ||||||||
Sbjct 1580 CGAATCATTCGAGCC-TCTCTTAACCGATTATGCACTAAGACCGGTGATGAACTCAGAGC 1638
Query 1622 ACG-CACATAA-CTTCATGA-CAGCTTACAAATCGCCAGAGTATAGACCTTCGAAAGG-A 1677
| | | || || || |||| | | || ||||| ||||||||||| | || ||||| |
Sbjct 1639 A-GTCTCACAATCTA-ATGATCT-CATATAAATCACCAGAGTATAG-C-TT--AAAGGGA 1691
Query 1678 CAAATCATAACGAAGAAGACAGATGTTTGGTGTTTTGGTGTGTTGATCTTGGAAGTT-TT 1736
|| || |||| || ||||||||||||||||| | || || ||||||||||| | | ||
Sbjct 1692 CA--TC-TAACAAAAAAGACAGATGTTTGGTGCCTCGGGGTTTTGATCTTGGA-GCTATT 1747
Query 1737 GACAGGAAGATTCCCTGAAAATTA-CTTAACGC-AAGGTTATGATTCTAACATGAGTCTT 1794
||||| || || || || ||||| || || || |||| || ||| |||||||||| ||
Sbjct 1748 AACAGGTAGGTTTCCGGAGAATTATCT-AA-GCCAAGGGTACGATGCTAACATGAGCCTC 1805
Query 1795 GTGACTTGGGTTAACGATATGGTTAAGGAGAAGAAAACAGGTGACGTGTTCGACAAGGAA 1854
|| |||||||| | | | |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1806 GTAACTTGGGTCAGCAACATGGTTAAGGAGAAGAAAACGGGTGACGTGTTTGACAAGGAA 1865
Query 1855 ATGAAAGGGAAGAAGAATTGTAAAGCGGAAATGATTAAT-TTGTTGAAAATTGGTTTGAG 1913
|||| ||||||||||| || ||||| || ||| | || || |||||||| || |||||
Sbjct 1866 ATGACTGGGAAGAAGAACTGCAAAGCAGAGATGCTAAACCTT-TTGAAAATCGGGTTGAG 1924
Query 1914 ATGTTGCgaagaagaagaagagaggaggatggatatgagagaagttgtggagatggttga 1973
|||||||||||||| ||||| ||||||||||| |||||||| | ||||||| | | ||
Sbjct 1925 TTGTTGCGAAGAAGATGAAGAAAGGAGGATGGAGATGAGAGATGCGGTGGAGAAGATAGA 1984
Query 1974 gatgttgagagaaggagaaTCTGA-AGATGATTT 2006
|| ||| | ||||||||||| ||| | |||||||
Sbjct 1985 GAGGTTAAAAGAAGGAGAATTTGACA-ATGATTT 2017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5