BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50620.1 Length=2223 Score E Sequences producing significant alignments: (Bits) Value Ahg474193 jgi|Araly1|474193|fgenesh2_kg.1__4147__AT1G50620.1 2534 0.0 > Ahg474193 jgi|Araly1|474193|fgenesh2_kg.1__4147__AT1G50620.1 Length=2097 Score = 2534 bits (1372), Expect = 0.0 Identities = 1676/1818 (92%), Gaps = 40/1818 (2%) Strand=Plus/Plus Query 1 ATGGATGTGGCCATTAGTGATGATGTACCGGTGAATCTCGAATCGGTTgaagaaaagaga 60 ||||||||||| |||| | ||||||||||| |||||| ||||| |||| ||||| |||| Sbjct 1 ATGGATGTGGCGATTA--G-TGATGTACCGGAGAATCTTGAATCTGTTGTAGAAACGAGA 57 Query 61 gatgaagaaactgtggaagaatcgccggtgaagaagaagaagCCACGTTTTGATGAGGAA 120 |||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 58 GATGAAGAAAATGTGGAAGAATCGCCGGT---GAAGAAGAAGCCACGTTTTGATGAAGAA 114 Query 121 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 174 Query 181 AAACCCCCGACGGAATTGGAGATTGATCTAATGGTGGAAGCTAAATCGAAATTGGTTGAC 240 ||| | ||||| |||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 175 AAAACTCCGACTGAATTGGAGATTGAGCTTATGGTTGAAGCTAAATCGAAATTGGTTGAC 234 Query 241 ATGTGTCAAGAGTTTACTCCCAAG-GATATTATTGGTGTTGATGCTATTGGAGCTGTCAT 299 ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| Sbjct 235 ATGTGTCAAGAGTTTACTCCC-AGAGATATTATTGGTATTGATGCTATTGGAGCTGTCAT 293 Query 300 TGAAGATCTCGGTTTCAATGGTAAGCTTAAGGATCAGAGATTAGGGTTTCGAGCTCCTAA 359 ||||||||| ||||| |||||||||||||| || ||| |||||||||||||||||||||| Sbjct 294 TGAAGATCTGGGTTTGAATGGTAAGCTTAAAGACCAGCGATTAGGGTTTCGAGCTCCTAA 353 Query 360 ATTAACCATCTCTGAGAAGCTATCTCTTGGCAAGAGAAAGATGGAGGAATTG-AAAAAGA 418 ||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||||| Sbjct 354 ATTAACCATCTCTGAGAAGCTGTCTCTTGGGAAGAGAAAGATGGAAGAATTGAAAAAAG- 412 Query 419 ATCCAGTAGTATCAACTACATCTACATCTCCAGCAGTAAATAATGTTTCTATGGCGCATC 478 ||| ||||||| ||||| | |||||||||||| || |||||| ||||||||||||| Sbjct 413 CCCCAATAGTATCCACTACCTATACATCTCCAGC---AAGTAATGTGTCTATGGCGCATC 469 Query 479 AGTGGCCTAATAGCGAGATGAAGGCATCCGCTAGTTCTGTTAATGCATCTGGAAGCCATT 538 |||||||||||||||| |||||||||||| |||||||||||||||||||| | | Sbjct 470 AGTGGCCTAATAGCGATATGAAGGCATCCACTAGTTCTGTTAATGCATCT-G--G----- 521 Query 539 ACGTTAGGGAAGCGTCAGGAATAACACAAGCTAGAATGGAGAGACCACAGTTTAAGTCAG 598 | |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 522 A----AGGGAAGCATCAGGAATAACACAAGCTAGAATGGAGAGACCGCAGTTTAAGTCAG 577 Query 599 ATTTGCATACCGGTACTTCTCAGGGACCAGCAGTTCCTGCCGGAAATTATTTTGGGAATA 658 || |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 578 ATATGCATACCGGTACTTCTCAGGGACCAGCAGTTACTGCCGGAAATTACTTTGGGAATA 637 Query 659 CTACAACTTGGTCTGCCCAACCTCATTCCAGTACCTCCACCATATCATTTGGTACTGCAT 718 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 638 CTACATCTTGGTCTGCCCAACCTCATTCCAGTTCCTCCACCATATCATTTGGTACTGCAT 697 Query 719 CAGATAGCAAGGTTCCTGTTCCGAGTTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 778 | ||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 698 CGGATAGCAAGGTTCCTGTTCAGGGCTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 757 Query 779 TTATGTCTCAAACTCCACCAGGTGCATTCCCAGGCATGAAAGGAGCAACTTATGGTCAAA 838 ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| Sbjct 758 TTATGTCTCAAACTCCACCAGGTCCATTCCCAGGCATGAAAGGGGTGACTTATGGTCAAA 817 Query 839 CTTCTTCACCTTTTGGAAACAACAACCATGCTGAAATTGCTAAGTTAATCCACAAAGTTC 898 |||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 818 CTTCTTCATCTTTTGGAAACAACCACCATGCTGAAATTGCTAAGTTAATCCATAAAGTTC 877 Query 899 TGCAACCGCGGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAATACATGAGTA 958 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 878 TGCAACCGCAGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAGTACATGAGTA 937 Query 959 AAGCAATGACATGCCAAATATGTCAAGGAACTATCAATGAAATAGAAACGGTGCTAATCT 1018 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 938 AAGCAATGACATGCCAAATGTGTCAAGGAACTATCAATGAAGTAGAAACGGTGCTAATCT 997 Query 1019 GTGATGCTTGTG-AAAAGGGATATCACTTGAAATGTCTACATGCTCACAATATAAAAGGT 1077 |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 998 GTGATGCTTGTGAAAAAGGG-TATCACTTGAAATGTCTACAAGCTCACAATATAAAAGGT 1056 Query 1078 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAATTATACAATGGCAAGTCTTTT 1137 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1057 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAGTTATACAATGGCAAGTCTTTT 1116 Query 1138 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1117 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1176 Query 1198 GCCGAAGTTCAATTACCCGCAGAGAAGGGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1257 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1177 GCCGAAGTTCAGTTACCCGCAGAGAAGAGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1236 Query 1258 GAGGGAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1317 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 GAGGCAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1296 Query 1318 GTTGAAGCTGAAGATGTAGCTATG-AATCCAATAGTTGAAAA---AGCTATGAGTGAAAT 1373 ||||||| | || ||||||| || | || ||||||| | |||||||| | ||| Sbjct 1297 GTTGAAG---A---TGCAGCTATGGAA-CAAACAGTTGAAGATGCAGCTATGAATCCAAT 1349 Query 1374 GGTGGAAGCTGAAGGTGCAGCTATTAATCCAATAGTTGAAGCTGAAGATGGAGCTATGAA 1433 || ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1350 AGTTGAAGCTGAAGGTGAAGCTATGAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAA 1409 Query 1434 TCCAATAGTTGAAAAAGCAATGAGTCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1493 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1410 TCCAATAGTTGAAAAAGCTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1469 Query 1494 AGCAGTTGATGCTAACTTTCAAACACAAGCTCCCACAGGAAACGATGATGCTGAGAGTGA 1553 |||||||||||||||||| |||||||| ||| | || |||||||||||||||| |||| Sbjct 1470 AGCAGTTGATGCTAACTTAAAAACACAATTTCCTATAGCAAACGATGATGCTGAGTGTGA 1529 Query 1554 TGATCCTTCGGAACCAGTATCTCACTCAGAGACTCTTAATCCT-CCAGAACTAGAGAAAA 1612 ||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||| Sbjct 1530 TGATCCTTCAGAACCAGTATCTCACTCAGAGACTCTTAATC-TGCCAGAACCAGAGAAAA 1588 Query 1613 AAGAAGTTATGAGGAAAGATGCTACTGAGAGATCTGTTTCCGCAGATTGTCAAGATAAAA 1672 |||||||| |||| ||| || |||||||||||| |||||||||| || |||||||||||| Sbjct 1589 AAGAAGTTCTGAGCAAAAATCCTACTGAGAGATGTGTTTCCGCAAATAGTCAAGATAAAA 1648 Query 1673 ACTCAAAGATCATAGCGGAATCCTCATTACAAGAGGAGATTTCAGCTTCTCAGACAGAGA 1732 |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1649 ACTCAAAGATCATAGCTGAATCATCATTACAAGAGGAGAATTCAGCTTCTCAGACAGAGA 1708 Query 1733 ACTCACCAACCCAGCCTCCTTCGCAATCTGACACAGATCATTCCCAACAGCAGAAGACGA 1792 ||||||||||||||| ||||| |||||| |||||||||||||||||| |||||| | || Sbjct 1709 ACTCACCAACCCAGCTTCCTTTGCAATCCAACACAGATCATTCCCAACCGCAGAACATGA 1768 Query 1793 CACCAAATGTCGAAGAGG 1810 |||||||||| ||||||| Sbjct 1769 CACCAAATGTGGAAGAGG 1786 Score = 536 bits (290), Expect = 2e-151 Identities = 382/425 (90%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 1805 AAGAGGAGAAATCAGCTTCTCAGGCAGAGAACTCACCAACCCAGCCTCCTTCGCAATCCA 1864 |||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 1679 AAGAGGAGAATTCAGCTTCTCAGACAGAGAACTCACCAACCCAGCTTCCTTTGCAATCCA 1738 Query 1865 ACACAGATCATTTCCCAACAGCATAACATGACACCAAATGTCGAAGAGGCTACTATACCG 1924 |||||||||| |||||||| ||| ||||||||||||||||| ||||||| |||||| | Sbjct 1739 ACACAGATCA-TTCCCAACCGCAGAACATGACACCAAATGTGGAAGAGG---CTATACAG 1794 Query 1925 AAAAATGTCACAGAAAATCCAGAGGACGACAAAAGCTGTT-AATGGTTCAGACAAAAGTT 1983 |||||||||||||||||||||||||| |||||||||| || |||| |||||||||||||| Sbjct 1795 AAAAATGTCACAGAAAATCCAGAGGAAGACAAAAGCTTTTAAATGTTTCAGACAAAAGTT 1854 Query 1984 ACAGGGGGCAG--CTCACTCTGTCCACAACAGTCGGTATTCGCACTCTATTTGGTCCTCA 2041 |||| ||| ||||||||||||| ||||| ||| ||||||||||||||||||||| Sbjct 1855 GCAGGAATCAGAATTCACTCTGTCCACGGCAGTCAGTACTCGCACTCTATTTGGTCCTCA 1914 Query 2042 AGTATATATAAAGTAAGTGATGAAGTCTTTGATTTAACC-TTTTGGGGTAGGTTGAATTT 2100 ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| Sbjct 1915 AGTATATATAAAGTAAGTGATGATGTCTTTGATATAACCTTTTTGGGGTAGGTTGAATTA 1974 Query 2101 CTAAAT-CTATATTCTATGAAGTGCGTGTGTGGGCTTTCAATTTTCTGAGCAGAAGTAGT 2159 |||||| | ||||||||||||||| |||||| | |||||||||||||||| ||||||| Sbjct 1975 CTAAATGTTTTATTCTATGAAGTGC--GTGTGGCCGTTCAATTTTCTGAGCATAAGTAGT 2032 Query 2160 GACTGATTTAGTTTAGCTTGAAC-TTTTTTAAGACACTTTGTGAAATAAATCCTGAATTC 2218 ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| Sbjct 2033 GACTGATTTAGTTTAGCTTGAACCTTTTTTAAGACACTTTGTGAAATATTTCCTTAATTC 2092 Query 2219 ACTGT 2223 ||||| Sbjct 2093 ACTGT 2097 Score = 141 bits (76), Expect = 2e-32 Identities = 104/117 (89%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 1302 AGCTATGGAA-CAAACAGTTGAAGCTGAAGATGTAGCTATGAATCCAATAGTTGAAAAAG 1360 |||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1368 AGCTAT-GAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAATCCAATAGTTGAAAAAG 1426 Query 1361 CTATGAGTGAAATGGTGGAAGCTGAAGGTGCAGCTATTAATCCAAT-AGTTGAAGCT 1416 ||||||| |||| || |||||||||| |||||||||||||| || |||||| ||| Sbjct 1427 CTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATC-AAGCAGTTGATGCT 1482 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83684268265 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5