BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50620.1
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474193 jgi|Araly1|474193|fgenesh2_kg.1__4147__AT1G50620.1 2534 0.0
> Ahg474193 jgi|Araly1|474193|fgenesh2_kg.1__4147__AT1G50620.1
Length=2097
Score = 2534 bits (1372), Expect = 0.0
Identities = 1676/1818 (92%), Gaps = 40/1818 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTGGCCATTAGTGATGATGTACCGGTGAATCTCGAATCGGTTgaagaaaagaga 60
||||||||||| |||| | ||||||||||| |||||| ||||| |||| ||||| ||||
Sbjct 1 ATGGATGTGGCGATTA--G-TGATGTACCGGAGAATCTTGAATCTGTTGTAGAAACGAGA 57
Query 61 gatgaagaaactgtggaagaatcgccggtgaagaagaagaagCCACGTTTTGATGAGGAA 120
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 58 GATGAAGAAAATGTGGAAGAATCGCCGGT---GAAGAAGAAGCCACGTTTTGATGAAGAA 114
Query 121 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GTGAATAGAGTGGCGGAGATTGTATTGGTGTTATCGGCATTGCGGAAGATTCGAGGTGGG 174
Query 181 AAACCCCCGACGGAATTGGAGATTGATCTAATGGTGGAAGCTAAATCGAAATTGGTTGAC 240
||| | ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 175 AAAACTCCGACTGAATTGGAGATTGAGCTTATGGTTGAAGCTAAATCGAAATTGGTTGAC 234
Query 241 ATGTGTCAAGAGTTTACTCCCAAG-GATATTATTGGTGTTGATGCTATTGGAGCTGTCAT 299
||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 235 ATGTGTCAAGAGTTTACTCCC-AGAGATATTATTGGTATTGATGCTATTGGAGCTGTCAT 293
Query 300 TGAAGATCTCGGTTTCAATGGTAAGCTTAAGGATCAGAGATTAGGGTTTCGAGCTCCTAA 359
||||||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 294 TGAAGATCTGGGTTTGAATGGTAAGCTTAAAGACCAGCGATTAGGGTTTCGAGCTCCTAA 353
Query 360 ATTAACCATCTCTGAGAAGCTATCTCTTGGCAAGAGAAAGATGGAGGAATTG-AAAAAGA 418
||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||
Sbjct 354 ATTAACCATCTCTGAGAAGCTGTCTCTTGGGAAGAGAAAGATGGAAGAATTGAAAAAAG- 412
Query 419 ATCCAGTAGTATCAACTACATCTACATCTCCAGCAGTAAATAATGTTTCTATGGCGCATC 478
||| ||||||| ||||| | |||||||||||| || |||||| |||||||||||||
Sbjct 413 CCCCAATAGTATCCACTACCTATACATCTCCAGC---AAGTAATGTGTCTATGGCGCATC 469
Query 479 AGTGGCCTAATAGCGAGATGAAGGCATCCGCTAGTTCTGTTAATGCATCTGGAAGCCATT 538
|||||||||||||||| |||||||||||| |||||||||||||||||||| | |
Sbjct 470 AGTGGCCTAATAGCGATATGAAGGCATCCACTAGTTCTGTTAATGCATCT-G--G----- 521
Query 539 ACGTTAGGGAAGCGTCAGGAATAACACAAGCTAGAATGGAGAGACCACAGTTTAAGTCAG 598
| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 522 A----AGGGAAGCATCAGGAATAACACAAGCTAGAATGGAGAGACCGCAGTTTAAGTCAG 577
Query 599 ATTTGCATACCGGTACTTCTCAGGGACCAGCAGTTCCTGCCGGAAATTATTTTGGGAATA 658
|| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 578 ATATGCATACCGGTACTTCTCAGGGACCAGCAGTTACTGCCGGAAATTACTTTGGGAATA 637
Query 659 CTACAACTTGGTCTGCCCAACCTCATTCCAGTACCTCCACCATATCATTTGGTACTGCAT 718
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 638 CTACATCTTGGTCTGCCCAACCTCATTCCAGTTCCTCCACCATATCATTTGGTACTGCAT 697
Query 719 CAGATAGCAAGGTTCCTGTTCCGAGTTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 778
| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 698 CGGATAGCAAGGTTCCTGTTCAGGGCTCTTCCAGAATCTCAGATCCGAGCTTTAGACCAT 757
Query 779 TTATGTCTCAAACTCCACCAGGTGCATTCCCAGGCATGAAAGGAGCAACTTATGGTCAAA 838
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 758 TTATGTCTCAAACTCCACCAGGTCCATTCCCAGGCATGAAAGGGGTGACTTATGGTCAAA 817
Query 839 CTTCTTCACCTTTTGGAAACAACAACCATGCTGAAATTGCTAAGTTAATCCACAAAGTTC 898
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 818 CTTCTTCATCTTTTGGAAACAACCACCATGCTGAAATTGCTAAGTTAATCCATAAAGTTC 877
Query 899 TGCAACCGCGGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAATACATGAGTA 958
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 878 TGCAACCGCAGGCTAAACAAAATCTCTTGTGGAACCCACCTTCAAGAGAGTACATGAGTA 937
Query 959 AAGCAATGACATGCCAAATATGTCAAGGAACTATCAATGAAATAGAAACGGTGCTAATCT 1018
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 938 AAGCAATGACATGCCAAATGTGTCAAGGAACTATCAATGAAGTAGAAACGGTGCTAATCT 997
Query 1019 GTGATGCTTGTG-AAAAGGGATATCACTTGAAATGTCTACATGCTCACAATATAAAAGGT 1077
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 998 GTGATGCTTGTGAAAAAGGG-TATCACTTGAAATGTCTACAAGCTCACAATATAAAAGGT 1056
Query 1078 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAATTATACAATGGCAAGTCTTTT 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1057 GTTCCGAAATCTGAATGGCATTGCTCAAGATGTGTGCAGTTATACAATGGCAAGTCTTTT 1116
Query 1138 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CCTCCTAAATACGGCCGTGTCATGAGAAGCGCCACTACAGCAAAAATGTCTTCTAGTACA 1176
Query 1198 GCCGAAGTTCAATTACCCGCAGAGAAGGGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1257
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1177 GCCGAAGTTCAGTTACCCGCAGAGAAGAGGGTTGGTAAAATGGATCAAAAGGTTAGTCAA 1236
Query 1258 GAGGGAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1317
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GAGGCAATGCCACATCTCGAGACAGCAAAACCAACTAAGGATTCAGCTATGGAACAAACA 1296
Query 1318 GTTGAAGCTGAAGATGTAGCTATG-AATCCAATAGTTGAAAA---AGCTATGAGTGAAAT 1373
||||||| | || ||||||| || | || ||||||| | |||||||| | |||
Sbjct 1297 GTTGAAG---A---TGCAGCTATGGAA-CAAACAGTTGAAGATGCAGCTATGAATCCAAT 1349
Query 1374 GGTGGAAGCTGAAGGTGCAGCTATTAATCCAATAGTTGAAGCTGAAGATGGAGCTATGAA 1433
|| ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1350 AGTTGAAGCTGAAGGTGAAGCTATGAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAA 1409
Query 1434 TCCAATAGTTGAAAAAGCAATGAGTCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1493
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1410 TCCAATAGTTGAAAAAGCTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATCA 1469
Query 1494 AGCAGTTGATGCTAACTTTCAAACACAAGCTCCCACAGGAAACGATGATGCTGAGAGTGA 1553
|||||||||||||||||| |||||||| ||| | || |||||||||||||||| ||||
Sbjct 1470 AGCAGTTGATGCTAACTTAAAAACACAATTTCCTATAGCAAACGATGATGCTGAGTGTGA 1529
Query 1554 TGATCCTTCGGAACCAGTATCTCACTCAGAGACTCTTAATCCT-CCAGAACTAGAGAAAA 1612
||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1530 TGATCCTTCAGAACCAGTATCTCACTCAGAGACTCTTAATC-TGCCAGAACCAGAGAAAA 1588
Query 1613 AAGAAGTTATGAGGAAAGATGCTACTGAGAGATCTGTTTCCGCAGATTGTCAAGATAAAA 1672
|||||||| |||| ||| || |||||||||||| |||||||||| || ||||||||||||
Sbjct 1589 AAGAAGTTCTGAGCAAAAATCCTACTGAGAGATGTGTTTCCGCAAATAGTCAAGATAAAA 1648
Query 1673 ACTCAAAGATCATAGCGGAATCCTCATTACAAGAGGAGATTTCAGCTTCTCAGACAGAGA 1732
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1649 ACTCAAAGATCATAGCTGAATCATCATTACAAGAGGAGAATTCAGCTTCTCAGACAGAGA 1708
Query 1733 ACTCACCAACCCAGCCTCCTTCGCAATCTGACACAGATCATTCCCAACAGCAGAAGACGA 1792
||||||||||||||| ||||| |||||| |||||||||||||||||| |||||| | ||
Sbjct 1709 ACTCACCAACCCAGCTTCCTTTGCAATCCAACACAGATCATTCCCAACCGCAGAACATGA 1768
Query 1793 CACCAAATGTCGAAGAGG 1810
|||||||||| |||||||
Sbjct 1769 CACCAAATGTGGAAGAGG 1786
Score = 536 bits (290), Expect = 2e-151
Identities = 382/425 (90%), Gaps = 12/425 (3%)
Strand=Plus/Plus
Query 1805 AAGAGGAGAAATCAGCTTCTCAGGCAGAGAACTCACCAACCCAGCCTCCTTCGCAATCCA 1864
|||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||
Sbjct 1679 AAGAGGAGAATTCAGCTTCTCAGACAGAGAACTCACCAACCCAGCTTCCTTTGCAATCCA 1738
Query 1865 ACACAGATCATTTCCCAACAGCATAACATGACACCAAATGTCGAAGAGGCTACTATACCG 1924
|||||||||| |||||||| ||| ||||||||||||||||| ||||||| |||||| |
Sbjct 1739 ACACAGATCA-TTCCCAACCGCAGAACATGACACCAAATGTGGAAGAGG---CTATACAG 1794
Query 1925 AAAAATGTCACAGAAAATCCAGAGGACGACAAAAGCTGTT-AATGGTTCAGACAAAAGTT 1983
|||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||
Sbjct 1795 AAAAATGTCACAGAAAATCCAGAGGAAGACAAAAGCTTTTAAATGTTTCAGACAAAAGTT 1854
Query 1984 ACAGGGGGCAG--CTCACTCTGTCCACAACAGTCGGTATTCGCACTCTATTTGGTCCTCA 2041
|||| ||| ||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1855 GCAGGAATCAGAATTCACTCTGTCCACGGCAGTCAGTACTCGCACTCTATTTGGTCCTCA 1914
Query 2042 AGTATATATAAAGTAAGTGATGAAGTCTTTGATTTAACC-TTTTGGGGTAGGTTGAATTT 2100
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 1915 AGTATATATAAAGTAAGTGATGATGTCTTTGATATAACCTTTTTGGGGTAGGTTGAATTA 1974
Query 2101 CTAAAT-CTATATTCTATGAAGTGCGTGTGTGGGCTTTCAATTTTCTGAGCAGAAGTAGT 2159
|||||| | ||||||||||||||| |||||| | |||||||||||||||| |||||||
Sbjct 1975 CTAAATGTTTTATTCTATGAAGTGC--GTGTGGCCGTTCAATTTTCTGAGCATAAGTAGT 2032
Query 2160 GACTGATTTAGTTTAGCTTGAAC-TTTTTTAAGACACTTTGTGAAATAAATCCTGAATTC 2218
||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 2033 GACTGATTTAGTTTAGCTTGAACCTTTTTTAAGACACTTTGTGAAATATTTCCTTAATTC 2092
Query 2219 ACTGT 2223
|||||
Sbjct 2093 ACTGT 2097
Score = 141 bits (76), Expect = 2e-32
Identities = 104/117 (89%), Gaps = 4/117 (3%)
Strand=Plus/Plus
Query 1302 AGCTATGGAA-CAAACAGTTGAAGCTGAAGATGTAGCTATGAATCCAATAGTTGAAAAAG 1360
|||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1368 AGCTAT-GAATCCAACAGTTGAAGCTGAAGATGGAGCTATGAATCCAATAGTTGAAAAAG 1426
Query 1361 CTATGAGTGAAATGGTGGAAGCTGAAGGTGCAGCTATTAATCCAAT-AGTTGAAGCT 1416
||||||| |||| || |||||||||| |||||||||||||| || |||||| |||
Sbjct 1427 CTATGAGCCAAATAGTTGAAGCTGAAGATGCAGCTATTAATC-AAGCAGTTGATGCT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684268265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5