BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50630.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914174 jgi|Araly1|914174|Al_scaffold_0001_4428 2058 0.0
Ahg479553 jgi|Araly1|479553|fgenesh2_kg.3__2254__AT3G20300.1 850 0.0
> Ahg914174 jgi|Araly1|914174|Al_scaffold_0001_4428
Length=1347
Score = 2058 bits (1114), Expect = 0.0
Identities = 1285/1365 (94%), Gaps = 21/1365 (2%)
Strand=Plus/Plus
Query 101 ATGGCGGACATCGACATCGCCGTCGGGAAAGAGCCGCTGATAAACCATGAGAACAACAAC 160
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 ATGGCGGACATCGACATCGACGTCGGGAAAGAGCCGCTGATAAACCAT--GAA-AACAAC 57
Query 161 AACACGAACAAGATCTTCAATCGCTGCGTTTCACACCAACAAGACGAGCTACACAGCTTC 220
|||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 58 AACAAGAAGAAGATCTTCAATCGCTGCGTCTCCCACCAACAAGACGAGCTACACAGCTTC 117
Query 221 CGCAAATACCTAAGGTGGATGTGTGTAGATCACTCTAGTCCATGGACAGCGATTCTCTCT 280
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 118 CGAAAATACCTAAGATGGATGTGCGTAGATCACTCAAGTCCATGGACAGCGATTCTCTCT 177
Query 281 TGGACCATGTTCATCGTCTTCACACTCGTCGTTCCGGCGATCTCTCACTTCCTCCTCGCT 340
|||||| ||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 178 TGGACCGTGTTCGTCGTCTTCACCCTCGTCGTTCCTGCGATCTCTCACTTCCTTCTCGCT 237
Query 341 TGTGCTGATTGCGACAGTTACCATTCAAGACCTTACGACTCCGTCGTTCAGCTTTCTCTA 400
|| || ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||
Sbjct 238 TGCGCCGATTGCGACAGTTACCATTCAAGACCTTATGATTCCGTTGTTCAGCTTTCCCTA 297
Query 401 AGCAGCGTCGCCACCGTCTCTTTCCTCTGTCTCACCAGATTCGTTAGCAAGTATGGTCTT 460
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 298 AGCAGCGTCGCCACCGTCTCTTTCCTCTGTCTCACCAGATTCGTTAGCAAATACGGTCTC 357
Query 461 CGACGCTTCCTCTTCTTTGATAAACTCTGGGACGAGAGCGAAACCGTTCGACGAAATTAT 520
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 CGACGATTCCTCTTCTTTGATAAACTCTGGGACGAGAGCGAAACTGTTCGACGAAATTAT 417
Query 521 ACCAATCAACTCAATACTTCGCTTCATATTGTGTCCTACTTTGTGATTCCTTGTTTCTCA 580
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 ACCAATCAACTCAATACTTCGCTTCATATTGTGTCCTACTTTGTGATCCCTTGTTTCTCA 477
Query 581 GCAATGAGTGCATACAAAATTTGGTGGTACGCTTCAGGTGGATCTCGAATACCTTTTTTA 640
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 478 GCAATGAGTGCATACAAAATTTGGTGGTACGCATCAGGTGGATCTCGAATACCGTTTTTA 537
Query 641 GGAAATGCTGTCTTAAGCGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTATAC 700
||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 GGAAACGTTGTGTTAAGTGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTTTAT 597
Query 701 CGAACAACCGTAATCTTCCTTGTTTGTGTTCTCTTCCGTCTCATTTGCCATCTTCAGATC 760
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CGAACAACCGTAATCTTCCTTGTTTGTGTTCTCTTTCGTCTCATTTGCCATCTTCAGATC 657
Query 761 CTTCGTCTTCAAGACTTTGCTAAGCTCTTTCAGATTGATTCAGATGTTGGTTCTATCTTG 820
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 658 CTTCGTCTTCAAGACTTTGCTAAGCTTTTTCAGATTGATTCAGATGTTGGTTCTATATTG 717
Query 821 TCTGAACATCTTCGTATCAGACGTCATCTTAGAATCATTAGCCATAGATATCGTTCTTTC 880
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 TCTGAACATCTTCGTATTAGACGTCATCTTAGAATCATCAGCCATAGATATCGTTCTTTC 777
Query 881 ATTCTATGTTTATTGATTCTAGTTACTGGAAGTCAGTTTTCTTCTCTGCTTATTACTACC 940
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATTCTATGTTTATTGATTCTTGTTACTGGAAGTCAGTTTTCTTCTCTGCTTATTACTACC 837
Query 941 AAAGCCTACACTGAAGTCAATATCTACAGAGCTGGAGAACTCGCTCTTTGTTCTATGACA 1000
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 838 AAAGCTTACACTGAAGTCAATATGTACAGAGCTGGAGAACTCGCTCTTTGTTCGATGACA 897
Query 1001 TTAGTTACTGCACTTCTGATACTATTACGAAGTGCATCAAAGATCACACACAAGGCTCAG 1060
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 898 TTAGTCACTGCACTTCTGATACTATTACGAAGTGCATCAAAGATCACACATAAGGCTCAA 957
Query 1061 GCTGTGACATGTTTAGCTGCGAAATGGCATGTATGCGCCACGTTAGAATCCTTTGATCAG 1120
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 958 GCTGTGACATGTTTAGCTGCAAAATGGCATGTATGCGCGACGTTAGAATCCTTTGATCAG 1017
Query 1121 ACAGTAGAATCCTTTGATCAGACAGTAGAGACTCCAACTTTGGTTGCTAGAAACAACAAT 1180
|||||||| | | || | ||| ||||||||||||||||||||||||||||
Sbjct 1018 ACAGTAGA-T-----G----GA--G-AGA--CTCCAACTTTGGTTGCTAGAAACAACAAC 1062
Query 1181 ---GATAACAACAATGTCCATGATGTTGTTACGTTGACAGAATCAGACAGTGACGAGTAT 1237
||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1063 AACGATAACAACAATGGCCATGATGTTATTACGTTGACAGAATCAGACAGCGACGAGTAT 1122
Query 1238 GGTGATGAAGAAGATGATCTAGACAATAATGACATCATTCCTGTTTATGCTTTCAGTACC 1297
|||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 1123 GGTGATGAAGAAGATGATCTAGACAATAATAACATTATTCCTGCTTATGCTTTCAGTACC 1182
Query 1298 ATGTCATTCCAAAAACGGCAAGCTCTAGTGAGTTATTTCGAGAATAACAGCGCAGGAATC 1357
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1183 ATGTCATTCCAAAAACGGCAAGCTCTAGTGAGTTATTTTGAGAATAACAGAGCAGGAATC 1242
Query 1358 ACAGTGTATGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTCGGACTTGAATTG 1417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1243 ACAGTGTATGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTTGGACTTGAATTG 1302
Query 1418 TCTCTTGTTCTCTGGCTTCTTGGTAAAACCATTGGAATTTCTTGA 1462
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1303 TCTCTTGTTCTCTGGCTTCTCGGTAAAACCATTGGAATTTCTTGA 1347
> Ahg479553 jgi|Araly1|479553|fgenesh2_kg.3__2254__AT3G20300.1
Length=1637
Score = 850 bits (460), Expect = 0.0
Identities = 1032/1301 (79%), Gaps = 67/1301 (5%)
Strand=Plus/Plus
Query 186 GCGTTTCACAC-CAACAAGACGAGCTACACAGCTTCCGCAAATACCTAAGGTGGATGTGT 244
|||| || ||| | |||||||||||| || || ||||| ||||| || | ||||||||
Sbjct 182 GCGTATCTCACGC-ACAAGACGAGCTCCAGAGTTTCCGGAAATATCTGCGATGGATGTGC 240
Query 245 GTAGATCACTCTAGTCCATGGACAGCGATTCTCTCTTGGACCATGTTCATCGTCTTCACA 304
|| ||||| || ||||| ||||| ||| ||||||||||| | ||||| | || |||||
Sbjct 241 GTGGATCAGTCGAGTCCTTGGACCGCGGTTCTCTCTTGGTCTATGTTTGTTGTTTTCACG 300
Query 305 CTCGTCGTTCCGGCGATC-TCTCACTTCCTCCTCGCTTGTGCTGATTGCGACAGTTACCA 363
||||| ||||| || | | ||||||||| | |||||||||||||| ||||| || | ||
Sbjct 301 CTCGTTGTTCCTGCCA-CGTCTCACTTCATGCTCGCTTGTGCTGACTGCGATAGCCATCA 359
Query 364 TTCAAGACCTTACGACTCCGTCGTTCAGCTTTCTCTAAGCAGCGTCGCCAC-CGTCTC-T 421
|| || || ||||| ||||| || ||||||||||| ||||| |||| | | | || |
Sbjct 360 CTCGAGGCCGTACGATTCCGTTGTCCAGCTTTCTCTTAGCAGTTTCGCTGCTC-TTTCGT 418
Query 422 TTCCTCTGTCTCACCAGATTCGTTAGCAAGTATGGTCTTCGACGCTTCCTCTTCTTTGAT 481
|| | |||||| ||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 419 TT-TTATGTCTCTCCAGATTCGTTAGCAAGTATGGTCTCCGACGGTTTCTGTTCTTTGAT 477
Query 482 AAACTCTGGGACGAGAGCGAAACCGTTCGACGAAATTATACCAATCAACTCAATACTTCG 541
|| || ||||| |||||||| || ||||| ||| || |||||||| ||||||| |||
Sbjct 478 AAGCTTTGGGATGAGAGCGAGACGGTTCGTCGAGGCTACACCAATCAGCTCAATAGGTCG 537
Query 542 CTTC-ATATTGTGTCCTACTTTGTGATTCCTTGTTTCTCAGCAATGAG-TGCATACAAAA 599
| || | ||| | |||||||| || | ||||||||||| ||| ||||| | | || || |
Sbjct 538 C-TCAAGATTCTCTCCTACTTCGTCACTCCTTGTTTCTTAGCGATGAGCT-CTTATAAGA 595
Query 600 TTTGGTGGTACGCTTCAGGTGGATCTCGA-ATACCTTT-TTTAGGAAATGCTGTCTTAAG 657
| |||||||| |||||||| | |||| | || ||||| || || |||| | |||| ||
Sbjct 596 TATGGTGGTATGCTTCAGGAGCTTCTC-AGATTCCTTTCCTT-GGTAATGTTATCTTGAG 653
Query 658 CGATACAGTGGCTTGTATAATGGAGCTTTGTTCTTGGCTATACCGAACAACCGTAATCTT 717
|||||||| |||||| | ||||| || || || ||||| ||||| || ||||| |||||
Sbjct 654 TGATACAGTCGCTTGTCTGATGGAACTCTGCTCGTGGCTGTACCGTACTACCGTGATCTT 713
Query 718 CCTTGTTTGTGTTCTCTTCCGTCTCATTTGCCATCTTCAGATCCTTCGTCTTCAAGACTT 777
|| ||||| || ||||| |||||||| || ||||| ||||| ||| | || ||||||||
Sbjct 714 TCTGGTTTGCGTCCTCTTTCGTCTCATCTGTCATCTCCAGATTCTTAGGCTGCAAGACTT 773
Query 778 TGCTAAGCTCTTT-CAGATTGATTCAGATGTTGGTTCTATCTTGTCTGAACATCTTCGTA 836
|||| || | ||| ||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 774 TGCTCAGGT-TTTCCAGATGGATTCTGATGTTGGTTCTATCTTGTCTGAACATCTCCGCA 832
Query 837 TCAGACGTCATCTTAGAATCATTAGCCATAGATATCGTTC-TTTC-ATTCTATGTTTATT 894
|||||||||| || |||||||| ||||| ||||| || | ||| ||| | ||| ||
Sbjct 833 TCAGACGTCACCTGAGAATCATCAGCCACAGATACCGAACCTTTATATTGT-TGTCC-TT 890
Query 895 GATTCTAGTTACTGGAAGTCAGTTTT-CTTCTCTGCTTATTACTACCAAAGCCTACACTG 953
|||||| || |||||||||||||||| || ||||||||||||| || || |||||| |||
Sbjct 891 GATTCTTGTCACTGGAAGTCAGTTTTACT-CTCTGCTTATTACCACTAAGGCCTACGCTG 949
Query 954 AAGTCAATATCTACAGAGCTGGAGAACTCGCTCTTTGTTCTATGACATTAGTTACTGCAC 1013
|| | |||||||||||||| |||||||| || || ||||| ||||| | || || ||||
Sbjct 950 AATTGAATATCTACAGAGCAGGAGAACTAGCACTATGTTCAATGACGCTGGTCACCGCAC 1009
Query 1014 TTCTGATACTATTACGAAGTGCATCAAAGATCACACACAAGGCTCAGGCTGTGACATGT- 1072
| || || ||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1010 TGCTCATTCTACTACGAAGTGCCTCAAAGATCACACACAAGGCTCAGGCAGTGACTTGTC 1069
Query 1073 TTAGCTGCGAAATGGCATGTATGCGCCACGTTAGAATCCTTTGATCAGACAGTAGAATCC 1132
|| || || || |||||||| || || || ||||||||||||| |||||| |
Sbjct 1070 TT-GCAGCCAAGTGGCATGTCTGTGCGACAATAGAATCCTTTGA---GACAGT-G----- 1119
Query 1133 TTTGATCAGACAGTAGAGACTCCAACTTTGGTTGCTAGA--AA-CA-ACAATGATAACAA 1188
||| | | ||||||||||| || |||| |||| || | ||| |||| | |
Sbjct 1120 ---GAT--G---G-AGAGACTCCAAGGTTAGTTGATAGAGCAAGCGGACACGGATA-CTA 1169
Query 1189 -C-AATGTCCATGATGTTGTTACGTTGACAGAATCAGACAGTGACGAGTATGGTGATGAA 1246
| || | | |||| || || | || |||||||||||||| || ||||| || |||
Sbjct 1170 TCCAA---C-A-GATGATGATAA-TGGA--GAATCAGACAGTGAAGATTATGGAGACGAA 1221
Query 1247 GAAGATGATCTAGACAATAATGA-CATCATTCCTGTTTATGCTTTCAGTACCATGTCATT 1305
||||||||| | || || || | | ||||||||| |||||||| ||| ||||| |||||
Sbjct 1222 GAAGATGATTTCGATAACAACAATC-TCATTCCTGCTTATGCTTACAGCACCATATCATT 1280
Query 1306 CCAAAAACGGCAAGCTCTAGTGAGTTA-TTTCGAGAATAACAGCGCAGGAATCACAGTGT 1364
||||||| ||||||||||||| | ||| ||| ||||| || || ||||||||||| ||||
Sbjct 1281 CCAAAAAAGGCAAGCTCTAGTTAATTACTTT-GAGAACAATAGAGCAGGAATCACGGTGT 1339
Query 1365 ATGGGTTTACACTTGATAGAGGTACTCTCCATACAATCTTCGG-ACTTGAATTGTCTCTT 1423
||||||||||||||||||| |||||||||||||||||||||| | | ||| |||| |||
Sbjct 1340 TTGGGTTTACACTTGATAGAAGTACTCTCCATACAATCTTCGGTA-TCGAAATGTCGCTT 1398
Query 1424 GTTCTCTGGCTT-CTTGGTAAAACCATTGGAATTTCTTGAA 1463
||||||||| || |||||||| |||||||||||||||||||
Sbjct 1399 GTTCTCTGG-TTACTTGGTAAGACCATTGGAATTTCTTGAA 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5