BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50640.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474196 jgi|Araly1|474196|fgenesh2_kg.1__4150__AT1G50640.1 1670 0.0
> Ahg474196 jgi|Araly1|474196|fgenesh2_kg.1__4150__AT1G50640.1
Length=1218
Score = 1670 bits (904), Expect = 0.0
Identities = 1172/1287 (91%), Gaps = 76/1287 (6%)
Strand=Plus/Plus
Query 1 GCTTTTTGTGTTGAAGAGAGAGTttcctatcttctccattcctcccaccatctccctcat 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 GCTTTTTGTGTTGAAGAGAGAGTTTCCTATCTTCCCCATTCCTCCCACCATCTCCCT-A- 58
Query 61 cttcatcttcctctctctttctctctttctcaacaatctctattagatctttctcCATTA 120
||| | ||| || |||| || || | | |||| |||||||||||||
Sbjct 59 ----ATC-T--TCT-TC-TTCT-TCCTT-T---C--TCTC-------TCTTTCTCCATTA 95
Query 121 CCATTACCTCTGGCTTTCTCTTAAATCCACCATCATGAGGAGAGGAAGAGGCTCTTCCGC 180
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 96 CCATTACTTCTGGCTTTCTCTTAAATCCACTACCATGAGGAGAGGAAGAGGCTCTTCCGC 155
Query 181 CGTCGCCGGACCTACCGTCGTTGCCGCCATCAACGGATCTGTAAAAGAAATCA-GATTCA 239
||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||
Sbjct 156 CGTCGCCGGACCTACCGCCGTTGCCGCCATCAACGGATCTGTTAAAGAAA-CACGATTCA 214
Query 240 GAGGCGTAAGGAAGAGACCTTGGGGACGATTCGCAGCTGAGATCCGTGATCCATGGAAAA 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GAGGCGTTAGGAAGAGACCTTGGGGACGATTCGCAGCTGAGATCCGTGATCCATGGAAAA 274
Query 300 AAGCTCGTGTTTGGTTAGGTACTTTCGATTCCGCCGAAGAAGCTGCTCGCGCTTACGACT 359
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 275 AAGCTCGTGTCTGGTTAGGTACTTTCGATTCCGCCGTCGAAGCTGCTCGCGCTTACGACT 334
Query 360 CCGCCGCTCGTAACCTCCGTGGTCCTAAAGCCAAAACTAATTTCCCCATCGATTCTTCTT 419
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 335 CCGCCGCTCGTAACCTCCGTGGTCCAAAAGCCAAAACTAATTTCCCGATCGATTCTTCTT 394
Query 420 CTCCTCCTCCTCCTAATCTCCGATTTAATCAGATTCGTAATCAAAATCAAAACCAAGTCG 479
||||| |||||| || | |||||||||||||||| |||||||||||||| |||||||
Sbjct 395 CTCCTTCTCCTC--AA-CAACGATTTAATCAGATTCAAAATCAAAATCAAAATCAAGTCG 451
Query 480 ATCCGTTTATGGACCACCGGTTATTCACCGACCATCAACAACAGTTCCCGATTGTTAACC 539
||||||| |||||||||||||||| | ||||||||||||||||||| ||||| |||||||
Sbjct 452 ATCCGTTCATGGACCACCGGTTATACGCCGACCATCAACAACAGTTTCCGATCGTTAACC 511
Query 540 GGCCTACTAGTAGCAGCATGAGCAGCACCGTTGAATCGTTTAGCGGACCCAGACCTACGA 599
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 512 GGCCGACTAGTAGCAGCATGAGCAGCACCGTTGAATCGTTTAGCGGACCGAGACCTACGA 571
Query 600 CGATGAAACCGGCCACGACGAAGAGATATCCTAGAACTCCACCGGTTGTTCCGGAGGATT 659
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 572 CGATGAAACCGGCCACGACGAAGAGATATCCCAGAACTCCACCGGTTGTTCCCGAGGATT 631
Query 660 GTCACAGCGATTGCGATTCGTCGTCGTCTGTAATCGACGACGACGACGATATCGCATCGT 719
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 632 GTCACAGCGATTGCGATTCGTCGTCGTCTGTAATCGTCGACGACGACGATATCGCATCGT 691
Query 720 CTTCACGGCGACGGAATCCGCCGTTTCAATTCGATCTTAATTTTCCACCGTTGGATTG-T 778
| || |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 692 CATCGCGGCGACGGAATCCGCCGTTTCAATTCGATCTAAATTTTCCACCGTTGGAT-GAT 750
Query 779 GTTGACTTGTTCAATGGCGCTGATGATCTTCACTGTACCGATCTACGTCTCTAATGAATT 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GTTGACTTGTTCAATGGCTCTGATGATCTTCACTGTACCGATCTACGTCTCTAATGAATT 810
Query 839 GGTAAAATCAAAATCAAAATCACAGATCCGTGATCGGTTTGATTTTAATCGA--AAACAC 896
|||||| ||| || |||||||||||| |||||||||||| || |||||
Sbjct 811 GGTAAA-TCA----CA--------GATCCGTGATCGATTTGATTTTAATGGAGCAAACA- 856
Query 897 ACAACAAAATCC-tttttttttttttttttAAATTTTCTGTTTCGTTGATCTCATATAAT 955
|||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 ACAA-AAA-TCCCTTTTTTTTTTTTTTTTTAAATTTTCTGTTTCGTTGATCTCATATAAT 914
Query 956 TTTTACTATGCGGGagaaatagaaagacaaagaaacgaagaagaagaagaagaTGGTGAT 1015
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 915 TTTTACTATGCGGGAGAAATAGAAAGACAAAGAAACGAAGAAGAAGAAGA---TGGTGAT 971
Query 1016 GAGCTTGAGAGAGCTTGAGCTGGTTCTGTGTTTCTTCTGTGATGATATTGTAAGAGTATT 1075
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GAGCTTGAGAG--CTTGAGCTGGTTCTGTGTTTCTTCTGTGATGATATTGTAAGAGTATT 1029
Query 1076 ATTATTTTACTATTATT-ACTAAATCTTCAAAACCAAGAAGAAGAAGACCGAACACGATG 1134
|||||||| ||||||| |||| |||||||||| |||||||| |||||||||||||||||
Sbjct 1030 ATTATTTT--TATTATTTACTACATCTTCAAAATCAAGAAGAGGAAGACCGAACACGATG 1087
Query 1135 ATCTGTTGTGTCTGTTTGTTTTACTGTAAGAAAAACGCAGATCTGGGTTTCGtttttttC 1194
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1088 ATCTGTTGTGTCTGTTTGTTTTACTGTAAGAAAAA-GCAGATCTGGGTTTCGTTTTTT-C 1145
Query 1195 TTGAGATAGATCAAACAACCCCCATCTTTGTAACATATACATTTGGAACACTCATGATTC 1254
|||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1146 TTGAGATAGA--A-----------TCTTTGTAACATATACATTTGGAACACTGATGATTC 1192
Query 1255 TAAATAAAAAATCTAGAATCttttttt 1281
||||||||| ||||||||||||||||
Sbjct 1193 TAAATAAAA--TCTAGAATCTTTTTTT 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5