BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50650.1
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914177 jgi|Araly1|914177|Al_scaffold_0001_4431 778 0.0
> Ahg914177 jgi|Araly1|914177|Al_scaffold_0001_4431
Length=522
Score = 778 bits (421), Expect = 0.0
Identities = 493/527 (94%), Gaps = 7/527 (1%)
Strand=Plus/Plus
Query 1 ATGATGAGCATTAAGCTGACATTGTGTGCCTTAATCTTCTTCCTCTTAAATTCACTTCTT 60
||||||| ||||||||||||||| |||||||||||||||||| ||||||| || ||||||
Sbjct 1 ATGATGACCATTAAGCTGACATTTTGTGCCTTAATCTTCTTCATCTTAAACTCTCTTCTT 60
Query 61 CATCATGTTCTCGGTCACGATAACCAACTTAACACAACCTCGTCATGGCTTAAGAGCCAC 120
||||| ||| ||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 CATCAAGTTATCGGTCATAATAACCAACTTAATACAACCTCTTCATGGCTTAAGAGCCAC 120
Query 121 ATCAAAGCAGCTA-CAACAACAAATTGGGGTAGACCAAAGCCACCGATGTGTAAACCATG 179
| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ACCAAAGCAGC-AGCAACAACAAATTGGGGTAGGCCAAAGCCACCGATGTGTAAACCATG 179
Query 180 GATTTGCAAACGGTCCGGACCATCAGA-GGCTCGAATGAGATGTTGTCGTAACCAATGCG 238
||||||||||||||||||||| || | || |||||||||||||||||||||||||||||
Sbjct 180 GATTTGCAAACGGTCCGGACCGCCA-ATGGGTCGAATGAGATGTTGTCGTAACCAATGCG 238
Query 239 TTGATGTCTTGTCCGATCCAAACCATTGTCGGTTCTGTTTCAAGAGTTGTAGGTTCGCAT 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 TTGATGTCTTGTCCGATCCAAACCATTGTCGGTTCTGTTTCCGGAGTTGTAGGTTCGCAT 298
Query 299 TGTCGTGCTGCGATGGAGATTGTGTGGACACGAACACTGATCCGTCTAATTGTGGACAAT 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 TGTCGTGCTGCGATGGAGATTGTGTGGACACGAACAATGATCCGTCTAATTGTGGACAAT 358
Query 359 GCGGGAACGAGTGTGAATCCGGTGCGCCTTGTGAGTTTGGTATGTGTGGTTATGCTGCTC 418
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 359 GCGGGAATGAGTGTGAATCCGGGGCGTCTTGTGAGTTTGGTATGTGTGGTTATGCTGCTC 418
Query 419 CATCGTCACAGCCTGGAAAACGTCATCGTCGTCACAAGTTTCATCGGCCACGTCCTCCTC 478
||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
Sbjct 419 CATCGTCACAGCCTGGAAAACGTCATCGTCGGCCCAAGTTTCATCGGCCACATCCTCCAC 478
Query 479 CTTCTCCGGACAGTAAACTTAATTATGATGATCATGATGATGAATAA 525
|||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 479 CTTCTCCGGACAGTAAAC--A-TTATGATGATCATGATGATGAGTAA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19115950089
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5