BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50660.1
Length=2928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923516 jgi|Araly1|923516|scaffold_104797.1 3627 0.0
Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1 1096 0.0
> Ahg923516 jgi|Araly1|923516|scaffold_104797.1
Length=2230
Score = 3627 bits (1964), Expect = 0.0
Identities = 2143/2229 (96%), Gaps = 14/2229 (1%)
Strand=Plus/Plus
Query 432 TATGGCGGTGATTACGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 491
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TATGGCGGTGATTAAGTGATGAAAGTCACCGGAAAGCCGTATTCGACGGCGACATTACCG 62
Query 492 GCCTTTGAGTCGGATAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 551
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GCTTTTGAGTCGGAAAAGAATCTCTTCTCTCACGGTCCAGATCTCAGAGCTATTCAAAGA 122
Query 552 GCTACTACTGTCACTAAACGTCGAGCTAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 611
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 123 GCTACTACAGTCACTAAACGTCGAGCAAGGAACCCGAGTTTGACTCGTCAGCGAAGATCC 182
Query 612 GGTCCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCTTTATTGAAATGGAAGGTGGAG 671
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 183 GTTGCTTCTGGTGGCAGACGAAGCCGGCCGGAGACTCCGCTATTGAAATGGAAGGTGGAG 242
Query 672 GATCGGAATAAAGAGAGAAGCGGCGTTGTAGAAGACGATGATTAC------GA-GGA--T 722
||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
Sbjct 243 GATCGGAATAAAGAGAGAAGCGGCGTTGTCGAAGACGATGATTACGAGGATGATGGATGT 302
Query 723 -G--ATAATCACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 779
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGTAATAATAACCAGGTTGCGAGGTCAGAGACTACTCGCCGCAAGGATCGGAGGAAAATC 362
Query 780 GCACGGCCTGTCTCTGTTAGGAAACTCGCCGCTGGGCTATGGCGGTTGCAAGTTCCTGAC 839
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 TCACGGCCTGTCTCTGTTAGGAAACTCGCCGCCGGGCTATGGCGGTTGCAAGTTCCTGAC 422
Query 840 GCGAGTTCCAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGAAATGGT 899
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 423 GCGAGTTCTAGCGGCGGAGAAAGAAAGGGCAAAGAGGGGTTAGGGTTTCAGGGATGTGCT 482
Query 900 GGATACATGGGTGTTCCGTATCTTTATCACCATAGTGACAAACCCTCTGGTGGTCAGAGC 959
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct 483 GGATACATGGGTGTTCCGTATCTTTATCATCATAGTGACAAACCTTCTGGCGGTCAAAGC 542
Query 960 AATAAGATAAGGCAGAACCCTAGTACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 AATAAGATAAGGCAGAACCCTAGCACTATTGCTACGACAAAAAATGGATTCTTGTGTAAG 602
Query 1020 CTCGAACCTTCAATGCCATTTCCCCACTCAGCAATGGAGGGGGCGACAAAATGGGATCCT 1079
||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 603 CTCGAGCCTTCAATGCCATTTCCCCACTCGGCCATGGAGGGGGCAACAAAATGGGATCCT 662
Query 1080 GTCTGCTTGGATACAATGGAGGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 1139
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 663 GTCTGCTTGGATACAATGGATGAAGTACACCAAATATATAGCAACATGAAGCGTATTGAT 722
Query 1140 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CAGCAAGTGAATGCTGTGTCATTGGTTTCTTCCCTTGAAGCAGAACTGGAGGAAGCACAT 782
Query 1200 GCTCGCATAGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAGCTCGAGCAGTTC 1259
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 783 GCTCGCATTGAAGATCTCGAGAGCGAGAAGCGATCTCATAAAAAGAAACTCGAGCAGTTT 842
Query 1260 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCATGAGAAGGTCCGA 1319
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 843 TTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGGAGCAGGGAGCACGAGAAGGTCCGA 902
Query 1320 GCAATTATTGACGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 1379
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GCAATCATTGATGATATGAAAACTGATATGAACAGGGAGAAGAAAACCCGTCAGAGATTA 962
Query 1380 GAAATCGTAAATCATAAACTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1439
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAAATCGTGAATCATAAATTAGTCAACGAGCTTGCAGATTCAAAGTTAGCCGTGAAGCGT 1022
Query 1440 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TACATGCAGGACTACGAAAAGGAAAGGAAAGCAAGAGAATTGATTGAGGAAGTTTGCGAC 1082
Query 1500 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGAGATTGAAGCATTGAAGAGAGAATCC 1142
Query 1560 ATGAGCCTCAGAGAAGAAGTGGACGATGAAAGAAGAATGCTACAGATGGCTGAGGTCTGG 1619
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1143 ATGAGCCTCAGAGAAGAAGTAGACGATGAAAGAAGAATGCTGCAGATGGCTGAGGTCTGG 1202
Query 1620 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTCGAGGAAAGGTAC 1679
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1203 CGTGAGGAACGTGTCCAGATGAAGCTTATTGATGCCAAAGTAGCACTTGAGGAAAGGTAC 1262
Query 1680 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCACGAGATATCGTG 1739
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1263 TCACAAATGAACAAGCTTGTAGGAGATTTGGAATCTTTCCTTAGGTCAAGAGATATTGTG 1322
Query 1740 ACAGATGTCAAAGAGGTGAGAGAAGCTGAGTTATTAAGAGAAACCGCAGCATCAGTTAAT 1799
||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 1323 ACAGATGTCAAAGAGGTTAGAGAGGCTGAGTTATTAAGAGAAACCGCGGCATTGGTTAAT 1382
Query 1800 ATCCAAGAAATCAAGGAATTTACGTATGTGCCTGCAAACCCGGATGATATCTACGCGGTG 1859
||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||
Sbjct 1383 ATCCAAGAAATCAAGGAATTTACATATGAGCCTTCAAACCCGGATGATATCTACGCGGTG 1442
Query 1860 TTTGAAGAAATGAATCTCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTCGCTTAC 1919
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1443 TTTGAAGAAATGAATATCGGTGAAGCCCATGATAGAGAAATGGAGAAATCTGTTGCTTAC 1502
Query 1920 AGTCCAATCAGCCACGATTCTAAAGTTCACACGGTAAGTCTAGATGCCAATATGATGAAC 1979
||||||| |||||| | ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1503 AGTCCAACCAGCCATGGTTCTAAAGTTCACACGGTAAGTCCAGATGCCAATTTGATGAAC 1562
Query 1980 AAGAAAGGGAGACACTCAGATGCTTATACTCACCAGAATGGAGACATTGAAGAAGATGAT 2039
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1563 AAGAAAGGGAGACACTCAGATGCTTTTACTCACCAGAATGGAGACATAGAAGAAGATGAT 1622
Query 2040 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGCGGTTGGGAAACAGTGAGCCACCTCGAAGAACAAGGATCGAGTTACTCACCAGATGGG 1682
Query 2100 AGCATTCCTTCTGTGAACAACAAGAATCACAATCACCGACACAGCAACGCCTCCAGTGGT 2159
||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||
Sbjct 1683 AGCATTCCTTCTGTGAACAACAAAAATCACCATCACCGAGACAGCAACGCCTCGAGTGGT 1742
Query 2160 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGATACAATGACTCCAACCACAGAGATAAGT 2219
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1743 GGTACAGAGTCCTTAGGCAAAGTTTGGGATGAGACAATGACTCCAACCACAGAGATAAGC 1802
Query 2220 GAAGTGTGTTCCATTCCAAGACGGTCATCCAAAAAGGTTTCATCAATAGCAAAGCTTTGG 2279
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 1803 GAAGTGTGTTCCATTCCAAGGCGGTCATCCAAAAAAGTTTCATCGATAGCAAAGCTTTGG 1862
Query 2280 AGATCAACAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 2339
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 AGATCATCAGGTGCAAGCAATGGAGATAGAGATAGCAACTACAAGGTAATATCAATGGAA 1922
Query 2340 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAGTCAAGCGCGGGAATGGTTTCACCA 2399
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1923 GGTATGAATGGAGGAAGGGTTTCAAATGGGAGAAAATCAAGCGCGGGAATGGTTTCACCA 1982
Query 2400 GACAGAGTCTCGAGCAAAGGCGGATTTAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2459
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1983 GACAGAGTCTCGAGCAAAGGCGGATTCAGCCCGATGATGGATTTGGTTGGACAATGGAAC 2042
Query 2460 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2043 TCTTCACCGGAATCTGCAAATCATCCTCATGTAAACCGAGGAGGAATGAAAGGTTGCATA 2102
Query 2520 GAATGGCCTAGAGGTGCACAGAAGAGTAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2579
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2103 GAATGGCCTAGAGGTGCACAGAAGAATAGTTTGAAGTCAAAACTCATTGAAGCACGAATC 2162
Query 2580 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAGGATTTAGGAGCC-AAACCG 2638
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 2163 GAAAGCCAAAAGGTTCAGTTAAAGCATGTCCTTAAACAGAAGATTTAGGAGCCGAAACGG 2222
Query 2639 TTTTTGGTC 2647
|||| ||||
Sbjct 2223 TTTT-GGTC 2230
> Ahg479559 jgi|Araly1|479559|fgenesh2_kg.3__2260__AT3G20350.1
Length=2480
Score = 1096 bits (593), Expect = 0.0
Identities = 955/1125 (85%), Gaps = 43/1125 (4%)
Strand=Plus/Plus
Query 1004 TGGATTCTTGTGTAAGC-TCGAACCTTCAATGCCATTTCCCCACT-CAGCAATGGAGGGG 1061
||||||||||||||||| | || ||||| || |||||||| |||| | || |||||||||
Sbjct 687 TGGATTCTTGTGTAAGCAT-GAGCCTTCGATTCCATTTCCTCACTGC-GCGATGGAGGGG 744
Query 1062 GCGACAAAATGGGATCCTGTCTGCTTGGATACAATGGAGGAAGTACACCAAATATA-TAG 1120
|| |||||||||||||| | ||||||||||||| ||| |||||||||||||| || | |
Sbjct 745 GCAACAAAATGGGATCCCATTTGCTTGGATACAAGGGATGAAGTACACCAAATTTACT-G 803
Query 1121 CAACATGAAGCG-T-ATTGATCAGCAAGTGAATGCTGTGTCA-TTGGTTTCTTCCCTTGA 1177
|||| || | || | | | |||| ||||||||| |||| ||| | || |||||| |||
Sbjct 804 CAACGTG-A-CGTTGAATAATCAACAAGTGAATTCTGTTTCACTAGG-TTCTTCTATTG- 859
Query 1178 AGCAG-AACTGGAGGAAGCACATGCTCGCA-TAGAAGATCTCGAGAGCGAGAAGCGATCT 1235
|| | |||| ||||||| | |||| ||| || | || || ||||| ||||||||||||
Sbjct 860 AGTTGAAACTCCAGGAAGCTCGTGCTTGCATTA-AGGACCTTGAGAGTGAGAAGCGATCT 918
Query 1236 CATAAAAAGAAGCTCGAGCAGTTCTTGAGGAAAGTTAGCGAGGAGAGGGCTGCTTGGCGG 1295
|| ||||||||||| ||||||||| ||| ||||||||||||||| ||||| |||||||||
Sbjct 919 CAAAAAAAGAAGCTTGAGCAGTTCCTGAAGAAAGTTAGCGAGGAAAGGGCAGCTTGGCGG 978
Query 1296 AGCAGGGAGCATGAGAAGGTCCGAGCAATTATTGACGATATGAAAACTGATATGAACAGG 1355
||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||| |
Sbjct 979 AGCAGGGAGCATGAGAAGGTCCGAGCAATTATTGATGACATGAAAGCTGACATGAACAAG 1038
Query 1356 GAGAAGAAAACCCGTCAGAGATTAGAAATCGTAAATCATAAACT-AGTCAACGAGCTTGC 1414
|| ||||| || |||||||||||||||||||| |||| |||| | |||||| ||||||||
Sbjct 1039 GAAAAGAAGACTCGTCAGAGATTAGAAATCGTCAATC-TAAAATTAGTCAATGAGCTTGC 1097
Query 1415 AGATTCAAAGTTAGCCGTGAAGCGTTACATGCAGGACTACGAAAAGGAAAGGAAAGCAAG 1474
||||||||||||||| || |||||||||||||| || ||| || |||||||||| |||||
Sbjct 1098 AGATTCAAAGTTAGCAGTAAAGCGTTACATGCATGATTACCAACAGGAAAGGAAGGCAAG 1157
Query 1475 AGAATTGATTGAGGAAGTTTGCGACGAACTTGCAAAGGAAATAGGAGAAGATAAAGCTGA 1534
||||||| |||| |||||||| || ||||||||||||||||||| ||||||||||| |||
Sbjct 1158 AGAATTGGTTGAAGAAGTTTGTGATGAACTTGCAAAGGAAATAGAAGAAGATAAAGTTGA 1217
Query 1535 GATTGAAGCATTGAAGAGAGAATCCATGAGCCTCAGAGAAGAAGTGGACGATGAAAGAAG 1594
|||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||
Sbjct 1218 GATTGAAGCATTGAAGAGTGAATCCATGAATCTCAGAGAGGAAGTAGACGATGAAAGAAG 1277
Query 1595 AATGCTACAGATGGCTGAGGTCTGGCGTGAGGAACGTGTCCAGATGAAGCTTATTGATGC 1654
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AATGCTGCAGATGGCTGAGGTTTGGCGTGAGGAACGTGTCCAGATGAAGCTTATTGATGC 1337
Query 1655 CAAAGTAGCACTCGAGGA-AAGGTACTCACAAATGAACAAGCTTGTAGGAGATTTGGAAT 1713
||||||| |||| ||||| ||| || |||||||||||||| ||||||||||||||||||
Sbjct 1338 CAAAGTAACACTTGAGGACAAG-TATTCACAAATGAACAAACTTGTAGGAGATTTGGAAG 1396
Query 1714 CTTTCCTTAGGT-CACGAGATATCGTGACAGATGTCAAAGAGGTGAGAGAAGCTGAGTTA 1772
| ||||| | | || || ||| | | |||| ||| ||||||||||||| || || ||
Sbjct 1397 CCTTCCTC-GATTCAAGAAATA-C-T-ACAGGTGTGAAAGAGGTGAGAGTTGCGGAATTG 1452
Query 1773 TTAAGAGAAACCGCAGCATCAGTT-A-A-TATCCAAGAAATCAAGGAATTTACGTATGTG 1829
||||||||||| || ||||||||| | | ||||||| |||||||||||||||||||||
Sbjct 1453 TTAAGAGAAACTGCTGCATCAGTTGATAATATCCAACAAATCAAGGAATTTACGTATGAA 1512
Query 1830 CCTGCAAACCCGGATGATATC-TACGCGGTGTTTGAAGAAATGAATCTCGG-TGAAGCCC 1887
|||||||| ||||| ||| || | | | |||||||||||||||| || || ||||||||
Sbjct 1513 CCTGCAAAGCCGGACGATGTCCT-CATGTTGTTTGAAGAAATGAA-CTTGGGTGAAGCCC 1570
Query 1888 ATGATAGAGAAATGGAGAAATCTGTCGCTTACAGTCCAATCAGCCACGATTCTAAAGTTC 1947
| ||||||||||| ||| ||| ||| || |||||||| ||||||||| ||| |||| ||
Sbjct 1571 AGGATAGAGAAATCGAGCAATATGTTGCCTACAGTCCGGTCAGCCACGCTTCAAAAGCTC 1630
Query 1948 ACACGGTAAGTCTAGATGCCAATATGATGAACAAGAAAGGGAGACACTCAGA-TGCTTAT 2006
| |||||||||| ||||| |||| |||| ||||| | ||||||||||| || ||||| |
Sbjct 1631 ATACGGTAAGTCCAGATGTCAATTTGATTAACAA-A--GGGAGACACTC-GAATGCTT-T 1685
Query 2007 -ACTCACCAGAATGGAGACATT-GAAGAAGATGATAGCGGTTGGGAAACAGTGAGCCAC- 2063
||| | |||||||| || ||| ||||||||||| || || |||||||| ||||||||
Sbjct 1686 CACTGATCAGAATGGTGA-ATTTGAAGAAGATGACAGTGGCTGGGAAACTGTGAGCCATT 1744
Query 2064 CTCGAAGAACAAGGATCGAGTTACTCACCAGATGGGAGCATTCCT 2108
|| |||||||| ||||| |||||||| ||||||| |||||| |||
Sbjct 1745 CT-GAAGAACACGGATCCAGTTACTCTCCAGATGAGAGCATCCCT 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110537890990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5