BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50670.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474199 jgi|Araly1|474199|fgenesh2_kg.1__4153__AT1G50670.1 1369 0.0
> Ahg474199 jgi|Araly1|474199|fgenesh2_kg.1__4153__AT1G50670.1
Length=859
Score = 1369 bits (741), Expect = 0.0
Identities = 826/866 (95%), Gaps = 9/866 (1%)
Strand=Plus/Plus
Query 88 TCTATTCCTTCAAAACCAAGAACCCAACTTTGTTTTATATTCAAAAG--TTGTTTGCTTT 145
|||||||||||||||||||||||| ||||||||| |||| | |||| || ||||||||
Sbjct 1 TCTATTCCTTCAAAACCAAGAACCAAACTTTGTTCTATA-T--AAAGTTTTTTTTGCTTT 57
Query 146 CATCGCGTTTGGTGTTCATCTTCATCTGGTTTGAGATTATAATAACATGGAAGGAATCAT 205
||||||||||||||||||| |||||||||||||||| | | |||||||||| ||||||||
Sbjct 58 CATCGCGTTTGGTGTTCATTTTCATCTGGTTTGAGA-T-T-ATAACATGGATGGAATCAT 114
Query 206 TGTGAGAAGAGTTATACCATCTGATAACAGTTGTCTCTTCAATGCAATCGGTTATGTCAT 265
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 115 TGTGAGAAGAGTTATACCATCTGACAACAGTTGTCTCTTCAATGCAATCGGTTATGTCAT 174
Query 266 GGACAAGGACAAAAACAAAGCTCCTGAGCTCAGACAGGTGATAGCAGCAGCAGTTGCAAG 325
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 175 GGACAAGGATAAAAACAAATCTCCTGAGCTCAGACAGGTGATAGCAGCAGCGGTTGCAAG 234
Query 326 CAACAAGGAGAAATATAATGAAGCATTTCTAGGGAAGCTCAATGAAGAATATTGTGCTTG 385
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 235 CAACAAGGAGAAATATAATGAAGCATTTCTAGGGAAGCACAATGAAGAATATTGTACTTG 294
Query 386 GATTCTCAATCCAGACAAGTGGGGAGGTGCGATTGAGCTTTCGATATTAGCAGATTATTA 445
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GATTCTCAATCCAGAGAAGTGGGGAGGTGCGATTGAGCTTTCGATATTAGCAGATTATTA 354
Query 446 TGGTCGAGAAATTGCAGCTTACGACATTCAAACTAGTCGATGTGACTTGTATGGACAGAC 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGGTCGAGAAATTGCAGCTTACGACATTCAAACTAGTCGATGTGACTTGTATGGACAGAC 414
Query 506 GAGAAACTACGACGAAAGAGTTATGCTGATCTATGACGGTCTTCATTACGATGCTCTTGC 565
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAAAAACTACAACGAAAGAGTTATGCTGATCTATGACGGTCTTCATTACGATGCTCTTGC 474
Query 566 TCTGTCTCCATTTGAAGGGGCCGAGGAAGATTTTGATATGACTATATATCCAGTTGGTAA 625
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 TCTGTCTCCATTTGAAGGAGCCGAGGAAGATTTTGATATGACTATATTTCCAGTTGGTAA 534
Query 626 AGATAGATCCATAGGATCAATTGAAGGGCTTGCTTTGAATCTAGTGAAGGACCAACAAAG 685
|||||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 535 AGATAGATCCATCGGGTCAATTGAAGGGCTTGTTTTGAATCTAGTAAAGGACCAACAAAG 594
Query 686 GAAAAGGAGTTACACAGATACTGCAAACTTCACTCTACGTTGCGGTGTTTGCCAAATTGG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAAAAGGAGTTACACAGATACTGCAAACTTCACTCTACGTTGCGGTGTTTGCCAAATTGG 654
Query 746 AGTTATTGGACAAAAGGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTTAATTTTCA 805
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 655 AGTTATTGGACAAAAGGAAGCTGTGGAACATGCTCAAGCAACTGGTCATGTCAACTTTCA 714
Query 806 AGAATACAAATAAGAGAATGATTGATTTGATTCTTTTATACAGTTCCAAGAAACAAGAAA 865
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 715 AGAATACAAATAAGAGAATGATTGATTTGATTCTTTTATACAATTCCAAGAAACAAGAAA 774
Query 866 GTAAACCACGAAAATGATGTGCTTAATTTTAATTTTATGTTGTCAACAATACAAATTCAG 925
||||| |||||||||||||||||||||||||| || ||| |||||| || ||| |||||
Sbjct 775 GTAAATTACGAAAATGATGTGCTTAATTTTAATGTTGTGT-GTCAACTATTCAAGTTCAG 833
Query 926 TCTGTTGTGCAATTATCTTGTGTTGT 951
||||||||||||||||||||||||||
Sbjct 834 TCTGTTGTGCAATTATCTTGTGTTGT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5