BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50680.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1 1513 0.0
Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1 1033 0.0
> Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1
Length=1014
Score = 1513 bits (819), Expect = 0.0
Identities = 950/1015 (94%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 1 ATGAGACTTGATGACGAACCAGAAAACGCCCTAGTGGTTTCGTCTTCACCAAAGACGGTT 60
||||||||| |||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGAGACTTAATGACGAACCTGAAAACGCCCTAGTGGTTTCGTCTGCAACAAAGACGGTT 60
Query 61 GTGGCTTCTGGCAATGTCAAGTACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGT 120
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 GTGGTTTCTGGCAATGTCAAGTACAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGG 120
Query 121 GCCCAGATTTACGCAGACCACAAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAA 180
|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 121 GCTCAGATTTATGCAGACCACAAAAGGATTTGGCTTGGAACTTTCCAATCCGCTGCTGAA 180
Query 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCAC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCAC 240
Query 241 CGGAACTTCCCTTGGTCTACA-ATCACTCTCAACGAACCAGACTTTCAAAATTGCTACAC 299
|||||||||||||||||| | ||||| || ||||||||||||||||| ||||||||||
Sbjct 241 AGGAACTTCCCTTGGTCTA-ATATCACAGTCCACGAACCAGACTTTCAAGATTGCTACAC 299
Query 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTT 359
|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||
Sbjct 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTT 359
Query 360 TCTCAGAATCAGATCTCAGATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAGCCCG 419
||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 360 TCTAAGAGTCAGATCTCAGATTGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCG 419
Query 420 AGGAGAAGTGAATCAAGAATCAGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAGAAGTAAATCAAGAATCTGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479
Query 480 ATTGACACCGAGCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGT 539
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 ATTGACACCGAGTGATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGT 539
Query 540 GAAGTATATGCCTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGG 599
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 540 GAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAAGATGGTGAAATAGGAGG 599
Query 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659
Query 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGT 719
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGT 719
Query 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAA 779
||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||
Sbjct 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAA 779
Query 780 CAATGTGAAGACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTT 839
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 780 TAATGTCAAGACATTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTT 839
Query 840 TTCAGACAACGGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAGT 899
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 840 TTCAGACAACGGCACCGTGGTCGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGA 899
Query 900 GCAAGTAAAGAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATC 959
| ||| || ||||||||||||||| |||||||| | || | ||||||||||||||||| |
Sbjct 900 GGAAGGAATGAAAACAGAAAACTTCGTTAGCTCGAAGTCAAAAGATAAAGAAACCAAAAC 959
Query 960 AGAGGAGAACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAATGTCCTTAG 1014
|||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 960 AGAGGAAAACAAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAATGTCCTTAG 1014
> Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1
Length=1062
Score = 1033 bits (559), Expect = 0.0
Identities = 817/938 (87%), Gaps = 32/938 (3%)
Strand=Plus/Plus
Query 82 TACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGTGCCCAGATTTACGCAGACCAC 141
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 142 TACAAAGGAGTGGTTCAGCAGCAGAACGGTCATTGGGGTGCTCAGATTTACGCAGAACAC 201
Query 142 AAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAAGCCGCCACGGCTTACGATAGT 201
||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 202 AAACGGATTTGGCTTGGAACTTTCAAATCCGCTCCTGAAGCCGCTGCGGCTTACGATAGC 261
Query 202 GCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCACCGGAACTTCCCTTGGTCTACA 261
||||| || || || |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 262 GCATCGATTAAGCTTCGAAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCT-GA 320
Query 262 -ATCAC--TCTCAACGAACCAGACTTTCAAAATTGCTACACAACAG-AGACTGTGTTGAA 317
| || | || | ||||| ||||||||| | |||||| |||||| || ||||||||||
Sbjct 321 TTTTACGGT-TC-ATGAACCGGACTTTCAAGAGTGCTACTCAACAGAAG-CTGTGTTGAA 377
Query 318 CATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTTTCTCAGAATCAGATCTCA 377
|||||||||||||||||| ||||| ||||| |||||||||||||| |||||| | |||||
Sbjct 378 CATGATCAGAGACGGTTCTTACCAGCACAAGTTCAGAGATTTTCTTAGAATCCGGTCTCA 437
Query 378 GATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAG-CC--CGAGGAGAA-G-TGA-A 431
|||||| || | |||||||||| || ||||||||| || |||||||| | ||
Sbjct 438 GATTGTCGCTAACATCAACATCGTTGGTTCAAAACAAGTCCGAGGAGGAGAAGGAGGAGC 497
Query 432 TCAAGAATCAG-ACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGA 490
||||||||| | |||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 498 TCAAGAATC-GAACAAGTGTTTCTCGTGCACACAGCTTTTTCAGAAGGAACTGACACCGA 556
Query 491 GCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGTGAAGTATATGC 550
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 557 GCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGC 616
Query 551 CTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGGATCTGTGGAAG 610
||||||| |||| ||||||||||||||||| ||| | | | | |||| || ||||
Sbjct 617 CTTTCATTAGCGATGATCAAAGCGAGAAAG-AGA---CG-AGT-GAAGGA---GTAGAAG 667
Query 611 ATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACT 670
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ATGTGGAGGTTGTGTTTTATGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACT 727
Query 671 GGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGTGAAGGAGAAGA 730
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 GGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGA 787
Query 731 ATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAACAATGTGAAGA 790
||||||||||||| ||| |||||| ||| ||||||||||||||||| | |||||||||||
Sbjct 788 ATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAGCAATGTGAAGA 847
Query 791 CATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTTTTCAGACAACG 850
|||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 848 CATTAGAAGGCCAAAGCAAGAACTTCTTGATGATTGATGTTCATTACTTTTCAGGCAACG 907
Query 851 GTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAG-TGCAAGTAAA- 908
||| | | | |||||||||| | ||||||||| || ||||| | || ||| |||
Sbjct 908 GTTTCAACCTTCCCGAGGAAGTAAACAAGACGGTTCACGAGAGTTCTGATG-AAG-AAAT 965
Query 909 GAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATCAGAGGAGAA 968
||||||||||| | | ||||||| | ||||||||| | ||||||||||||||||||||
Sbjct 966 GAAAACAGAAACCCTCTTTAGCTCGAAGTTAGAAGA-A--GAAACCAAATCAGAGGAGAA 1022
Query 969 CAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAAT 1006
||||||||||||||| |||||||||| |||||| |||
Sbjct 1023 GAAAGGAGGGTTTATGTTGTTTGGTGTTAGGATCCAAT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5