BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50680.1 Length=1014 Score E Sequences producing significant alignments: (Bits) Value Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1 1513 0.0 Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1 1033 0.0 > Ahg474200 jgi|Araly1|474200|fgenesh2_kg.1__4154__AT1G50680.1 Length=1014 Score = 1513 bits (819), Expect = 0.0 Identities = 950/1015 (94%), Gaps = 2/1015 (0%) Strand=Plus/Plus Query 1 ATGAGACTTGATGACGAACCAGAAAACGCCCTAGTGGTTTCGTCTTCACCAAAGACGGTT 60 ||||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||| Sbjct 1 ATGAGACTTAATGACGAACCTGAAAACGCCCTAGTGGTTTCGTCTGCAACAAAGACGGTT 60 Query 61 GTGGCTTCTGGCAATGTCAAGTACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGT 120 |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 61 GTGGTTTCTGGCAATGTCAAGTACAAAGGGGTGGTTCAGCAACAGAACGGTCATTGGGGG 120 Query 121 GCCCAGATTTACGCAGACCACAAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAA 180 || |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 121 GCTCAGATTTATGCAGACCACAAAAGGATTTGGCTTGGAACTTTCCAATCCGCTGCTGAA 180 Query 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCAC 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 GCCGCCACGGCTTACGATAGTGCATCTATCAAACTCCGGAGCTTTGACGCTAACTCGCAC 240 Query 241 CGGAACTTCCCTTGGTCTACA-ATCACTCTCAACGAACCAGACTTTCAAAATTGCTACAC 299 |||||||||||||||||| | ||||| || ||||||||||||||||| |||||||||| Sbjct 241 AGGAACTTCCCTTGGTCTA-ATATCACAGTCCACGAACCAGACTTTCAAGATTGCTACAC 299 Query 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTT 359 |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || Sbjct 300 AACAGAGACTGTGTTGAACATGATCAGAGACGGTTCTTACCCGCACAAGTTCAGAGACTT 359 Query 360 TCTCAGAATCAGATCTCAGATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAGCCCG 419 ||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||| Sbjct 360 TCTAAGAGTCAGATCTCAGATTGTTGCGAGTATGAACATCGGGGGAACAAAACAAGTCCG 419 Query 420 AGGAGAAGTGAATCAAGAATCAGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 AGGAGAAGTAAATCAAGAATCTGACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGA 479 Query 480 ATTGACACCGAGCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGT 539 |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 480 ATTGACACCGAGTGATGTAGGAAAACTAAATAGGCTTGTGATACCTAAGAAGTATGCAGT 539 Query 540 GAAGTATATGCCTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGG 599 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| Sbjct 540 GAAGTATATGCCTTTCATAAGCGATGATCAAAGCGAGAAAGAAGATGGTGAAATAGGAGG 599 Query 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATCTGTGGAAGATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAG 659 Query 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGT 719 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 GTATTGTTACTGGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGCTGGAATAGTTTCGT 719 Query 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAA 779 ||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| Sbjct 720 GAAGGAGAAGAATCTCAAGGAGAAGGATGTTATAGTCTTTTACACTTGTGATGTCCCGAA 779 Query 780 CAATGTGAAGACATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTT 839 ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||| Sbjct 780 TAATGTCAAGACATTAGAAGGTCAAAGCAAGACCTTCTTGATGATCGATGTTCATTACTT 839 Query 840 TTCAGACAACGGTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAGT 899 |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 840 TTCAGACAACGGCACCGTGGTCGCTGAGGAAGTAAGCATGACGGTTCATGACAGTTCAGA 899 Query 900 GCAAGTAAAGAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATC 959 | ||| || ||||||||||||||| |||||||| | || | ||||||||||||||||| | Sbjct 900 GGAAGGAATGAAAACAGAAAACTTCGTTAGCTCGAAGTCAAAAGATAAAGAAACCAAAAC 959 Query 960 AGAGGAGAACAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAATGTCCTTAG 1014 |||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 960 AGAGGAAAACAAAGGAGGGTTTATGCTCTTTGGTGTAAGGATCCAATGTCCTTAG 1014 > Ahg474227 jgi|Araly1|474227|fgenesh2_kg.1__4181__AT1G51120.1 Length=1062 Score = 1033 bits (559), Expect = 0.0 Identities = 817/938 (87%), Gaps = 32/938 (3%) Strand=Plus/Plus Query 82 TACAAAGGAGTCGTTCAGCAACAGAACGGTCATTGGGGTGCCCAGATTTACGCAGACCAC 141 ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 142 TACAAAGGAGTGGTTCAGCAGCAGAACGGTCATTGGGGTGCTCAGATTTACGCAGAACAC 201 Query 142 AAAAGGATTTGGCTTGGAACTTTCAAATCCGCTGATGAAGCCGCCACGGCTTACGATAGT 201 ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 202 AAACGGATTTGGCTTGGAACTTTCAAATCCGCTCCTGAAGCCGCTGCGGCTTACGATAGC 261 Query 202 GCATCTATCAAACTCCGAAGCTTTGACGCTAACTCGCACCGGAACTTCCCTTGGTCTACA 261 ||||| || || || |||||||||||||||||||||||| ||||||||||||||||| | Sbjct 262 GCATCGATTAAGCTTCGAAGCTTTGACGCTAACTCGCACAGGAACTTCCCTTGGTCT-GA 320 Query 262 -ATCAC--TCTCAACGAACCAGACTTTCAAAATTGCTACACAACAG-AGACTGTGTTGAA 317 | || | || | ||||| ||||||||| | |||||| |||||| || |||||||||| Sbjct 321 TTTTACGGT-TC-ATGAACCGGACTTTCAAGAGTGCTACTCAACAGAAG-CTGTGTTGAA 377 Query 318 CATGATCAGAGACGGTTCGTACCAACACAAATTCAGAGATTTTCTCAGAATCAGATCTCA 377 |||||||||||||||||| ||||| ||||| |||||||||||||| |||||| | ||||| Sbjct 378 CATGATCAGAGACGGTTCTTACCAGCACAAGTTCAGAGATTTTCTTAGAATCCGGTCTCA 437 Query 378 GATTGTTGCGAGTATCAACATCGGGGGACCAAAACAAG-CC--CGAGGAGAA-G-TGA-A 431 |||||| || | |||||||||| || ||||||||| || |||||||| | || Sbjct 438 GATTGTCGCTAACATCAACATCGTTGGTTCAAAACAAGTCCGAGGAGGAGAAGGAGGAGC 497 Query 432 TCAAGAATCAG-ACAAGTGTTTTTCTTGCACACAGCTTTTTCAGAAGGAATTGACACCGA 490 ||||||||| | |||||||||| || |||||||||||||||||||||||| ||||||||| Sbjct 498 TCAAGAATC-GAACAAGTGTTTCTCGTGCACACAGCTTTTTCAGAAGGAACTGACACCGA 556 Query 491 GCGATGTAGGGAAACTAAATAGGCTTGTGATACCTAAAAAGTATGCAGTGAAGTATATGC 550 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 557 GCGATGTAGGGAAACTGAATAGGCTTGTGATACCTAAGAAGTATGCAGTGAAGTATATGC 616 Query 551 CTTTCATAAGCGCTGATCAAAGCGAGAAAGAAGAGGGTGAAATAGTAGGATCTGTGGAAG 610 ||||||| |||| ||||||||||||||||| ||| | | | | |||| || |||| Sbjct 617 CTTTCATTAGCGATGATCAAAGCGAGAAAG-AGA---CG-AGT-GAAGGA---GTAGAAG 667 Query 611 ATGTGGAGGTTGTGTTTTACGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACT 670 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 668 ATGTGGAGGTTGTGTTTTATGACAGAGCAATGAGACAATGGAAGTTTAGGTATTGTTACT 727 Query 671 GGAAAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATAGTTTCGTGAAGGAGAAGA 730 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 728 GGAGAAGTAGCCAGAGCTTTGTCTTCACCAGAGGATGGAATGGTTTCGTGAAGGAGAAGA 787 Query 731 ATCTCAAGGAGAAGGATGTTATTGCCTTCTACACTTGCGATGTCCCGAACAATGTGAAGA 790 ||||||||||||| ||| |||||| ||| ||||||||||||||||| | ||||||||||| Sbjct 788 ATCTCAAGGAGAAAGATATTATTGTCTTTTACACTTGCGATGTCCCCAGCAATGTGAAGA 847 Query 791 CATTAGAAGGTCAAAGAAAGAACTTCTTGATGATCGATGTTCATTGCTTTTCAGACAACG 850 |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||| Sbjct 848 CATTAGAAGGCCAAAGCAAGAACTTCTTGATGATTGATGTTCATTACTTTTCAGGCAACG 907 Query 851 GTTCCGTGGTAGCTGAGGAAGTAAGTATGACGGTTCATGACAGTTCAG-TGCAAGTAAA- 908 ||| | | | |||||||||| | ||||||||| || ||||| | || ||| ||| Sbjct 908 GTTTCAACCTTCCCGAGGAAGTAAACAAGACGGTTCACGAGAGTTCTGATG-AAG-AAAT 965 Query 909 GAAAACAGAAAACTTGGTTAGCTCCATGTTAGAAGATAAAGAAACCAAATCAGAGGAGAA 968 ||||||||||| | | ||||||| | ||||||||| | |||||||||||||||||||| Sbjct 966 GAAAACAGAAACCCTCTTTAGCTCGAAGTTAGAAGA-A--GAAACCAAATCAGAGGAGAA 1022 Query 969 CAAAGGAGGGTTTATGCTGTTTGGTGTAAGGATCGAAT 1006 ||||||||||||||| |||||||||| |||||| ||| Sbjct 1023 GAAAGGAGGGTTTATGTTGTTTGGTGTTAGGATCCAAT 1060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37703564913 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5