BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50690.1

Length=877
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914183 jgi|Araly1|914183|Al_scaffold_0001_4437                    556    7e-158


> Ahg914183 jgi|Araly1|914183|Al_scaffold_0001_4437
Length=504

 Score =  556 bits (301),  Expect = 7e-158
 Identities = 447/515 (87%), Gaps = 20/515 (4%)
 Strand=Plus/Plus

Query  163  ATGGATCCGCAGGTGGTGGTCGATAAGAAATCTGAGGAGCCTGATCTGAAGCGTCAGAAG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCCGCAGGTGGTGGTCGATAAGAAATCTGAGGAGCCTGATCTGAAGCGTCAGAAG  60

Query  223  CTggaggaggaggaggaggaggaTTGCGAAGAGATGTCTTCGTACAGCGAGTCGACGTGT  282
            ||||| ||||  || ||| |  || ||||||||||||| ||||||||||| || ||||||
Sbjct  61   CTGGACGAGGTCGATGAGAA--AT-GCGAAGAGATGTCGTCGTACAGCGATTCTACGTGT  117

Query  283  AGTTTCGATTCGGAAGATGAACGATTGGTCGAAGAAGAA-TACCAA-AGAAGCGGGTATT  340
            |||||||||||||||||||||||||||||| |||||||| | | || ||||||||| |||
Sbjct  118  AGTTTCGATTCGGAAGATGAACGATTGGTCAAAGAAGAACT-C-AACAGAAGCGGGGATT  175

Query  341  ACGACTTTGACACCACGAAACAAAGACGCCTTGTGTTTTGCTATCCTGTTATCTTCGAGG  400
            ||||||||||||||||||| ||||||||| ||||  |  |||||||||||| ||||||||
Sbjct  176  ACGACTTTGACACCACGAAGCAAAGACGCTTTGTAATGCGCTATCCTGTTAACTTCGAGG  235

Query  401  ATAGTGACGTTGCTCATAAACCCGAAACCGACGGAGATTTGGTTCATAGATTATCCAAGA  460
            |||| || |||| | || |||| || ||||||||||||||||| ||  ||||||||||||
Sbjct  236  ATAGCGATGTTGTTGATGAACCGGACACCGACGGAGATTTGGTCCACCGATTATCCAAGA  295

Query  461  TTGCTCTTCAGAAATACAATGA-TGATAAGCTGGA-AAATCTTGAACTT-GTGAGAGCTG  517
            |||||||||||||| ||||||| | |||| || || |||||||||| || ||||||||||
Sbjct  296  TTGCTCTTCAGAAACACAATGAGT-ATAA-CTTGACAAATCTTGAA-TTAGTGAGAGCTG  352

Query  518  TCAAGGCTAATCGGAAATATGGAGCCGGATTCATTTTCTACATCACCTTCGAGGCCAAGG  577
            |||||||||||||  | ||||| || ||||||||||||||||||||||||||||||||||
Sbjct  353  TCAAGGCTAATCGCCATTATGGCGCGGGATTCATTTTCTACATCACCTTCGAGGCCAAGG  412

Query  578  ATGCTAATTCTCACACTGACCCCATTAC-TTTTCAAGCTGCCGTTCGCTACCTTCGAGGG  636
            ||  | ||||||||| | |    || || |||||||||| ||||||||||||||| |  |
Sbjct  413  ATAATGATTCTCACATT-ATT--AT-ACCTTTTCAAGCTACCGTTCGCTACCTTCCACTG  468

Query  637  -ATTGAAACGGTCTACCGTGTCCACCCTAAACCAT  670
             |  | ||| |||||||||||| ||||||||||||
Sbjct  469  CAG-GTAACCGTCTACCGTGTCAACCCTAAACCAT  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32480725284


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5