BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50700.1
Length=2063
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1 2928 0.0
Ahg929969 jgi|Araly1|929969|scaffold_302426.1 1565 0.0
Ahg339776 jgi|Araly1|339776|fgenesh1_pg.C_scaffold_2001875 379 4e-104
Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1 200 3e-50
> Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1
Length=1921
Score = 2928 bits (1585), Expect = 0.0
Identities = 1825/1938 (94%), Gaps = 27/1938 (1%)
Strand=Plus/Plus
Query 14 CCCCAACTTTTCATGATTCTTCTGCAATTCAACTTTCCAAACAATCATTTGTTCTAAATC 73
||| |||||||||||||||||||||||||||||||| | | |||||||| |||
Sbjct 1 CCCGAACTTTTCATGATTCTTCTGCAATTCAACTTT-----C---C-TTTGTTCT-GATC 50
Query 74 TCTTAAACACAAATCTTTGCTTGATTAACCAAGTTCGTTGTCCT-TAGTTGCTGAATTG- 131
|||||||| |||||| ||||||||| || |||||||||||| || |||||||||| |||
Sbjct 51 TCTTAAACCCAAATCATTGCTTGATGAAACAAGTTCGTTGT-CTGTAGTTGCTGAGTTGA 109
Query 132 TAGC-C-TATACGTCTTCTAGTATAAACCCACCCaaaaaaaaGATCAAACCTTTGCTTAT 189
|| | | | |||||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 110 TA-CACTTCCACGTCTCCTAGTATAAACCCA-CC-AAAAAAAGATCAAACCTTTGCTT-T 165
Query 190 TTCTCTGTTTTATATCCCTGATTCTCTGCAAATTTTCACGAAAGGTTCGATCTTTGGTCT 249
|||||||||| || | | ||||||||| |||||||| ||| ||| |||||||||| ||||
Sbjct 166 TTCTCTGTTTCATTTTCTTGATTCTCTACAAATTTTTACGCAAGTTTCGATCTTTTGTCT 225
Query 250 CTGGGTCGTGATATTTTGAGCTTATTTAGCTAAAGCAAAGACGAACGGGCAATGGGGAAT 309
||||||||||| |||||||||| ||||||||||| || ||||||| ||||||||||||
Sbjct 226 CTGGGTCGTGACATTTTGAGCTGATTTAGCTAAAACAGAGACGAAAAAGCAATGGGGAAT 285
Query 310 TGCTTAGCCAAGAAATACGGATTGGTGATGAAACCACAACAAAATGGTGAAAGATCAGTT 369
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 286 TGCTTAGCCAAGAAATATGGAGTGGTGATGAAACCACAACAAAATGGTGAAAGATCAGCT 345
Query 370 GAGATCGAGAACAGAAGAAGGAGCACCCACCAAGATCCGTC-TAAAATATCC-ACCGGAA 427
||||||||||||||| ||||||| | ||||||| ||||| | | || | || || ||||
Sbjct 346 GAGATCGAGAACAGAGGAAGGAGTAACCACCAATATCCGCCGGAGAA-A-CCTACTGGAA 403
Query 428 CGAATCAACCACCACCTTGGCGGAATCCAGCGAAACACAGTGGTGCTGCAGCTATACTCG 487
||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 404 CGAATCAACCACCGCCGTGGCGGAATCCGGCGAAACACAGTGCTGCTGCAGCTATACTCG 463
Query 488 AGAAGCCGTACGAAGACGTGAAACTGTTCTACACTTTGAGCAAAGAATTGGGTCGAGGCC 547
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 464 AGAAGCCGTACGAAGACGTGAAACTGTTCTACACGCTGAGCAAAGAATTGGGTCGAGGCC 523
Query 548 AGTTTGGAGTAACGTATCTGTGCACAGAGAAGTCGACGGGGAAGAGATTCGCTTGCAAGT 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 AGTTTGGAGTAACGTATCTGTGCACAGAGAAGTCGACGGGGAAGAGATTCGCTTGCAAGT 583
Query 608 CGATTTCCAAGAAGAAACTTGTGACGAAAGGTGATAAAGAAGATATGAGGAGAGAGATTC 667
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 584 CGATTTCGAAGAAGAAACTTGTGACGAAAGCTGATAAAGAAGATATGAGGAGAGAGATTC 643
Query 668 AGATTATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTTTAAAGGAGCTTATGAAG 727
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 644 AGATCATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTATAAAGGAGCTTATGAAG 703
Query 728 ATGAGAAAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGTTCGATAGGA 787
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 704 ATGAGAAAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGTTTGATAGAA 763
Query 788 TTTTAGCAAAGGGACATTACAGTGAGAGAGCAGCTGCTTCTGTTTGTAGACAGATTGTTA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TTTTAGCAAAGGGACATTACAGTGAGAGAGCAGCTGCTTCTGTTTGTAGACAGATTGTTA 823
Query 848 ATGTTGTCAATATTTGTCATTTCATGGGTGTGATGCATAGAGACTTAAAGCCTGAGAATT 907
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 ATGTTGTCAACATTTGTCATTTCATGGGTGTGATGCATAGAGACTTAAAGCCTGAGAATT 883
Query 908 TCTTGTTATCTAGCAAAGATGAGAAGGCTCTTATCAAAGCCACTGATTTCGGATTATCAG 967
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 884 TCTTGTTATCTAGCAAAGATGAGAAGGCTCTTATTAAAGCCACTGATTTCGGATTATCGG 943
Query 968 TCTTTATCGAAGAAGGGAGAGTGTATAAAGATATAGTTGGGAGTGCATATTATGTTGCTC 1027
||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 944 TCTTTATTGAAGAAGGGAGAGTGTATAAAGGTATAGTTGGGAGTGCATATTATGTAGCTC 1003
Query 1028 CTGAAGTTTTGAAGCGGAGATATGGTAAAGAAATCGATATATGGAGTGCTGGAATTATAC 1087
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1004 CTGAAGTTTTGAAGCGTAGATACGGTAAAGAAATCGATATATGGAGTGCTGGAATTATAC 1063
Query 1088 TATACATTCTACTTAGTGGTGTGCCTCCGTTTTGGGCTGAAACGGAGAAAGGGATATTTG 1147
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1064 TATACATTCTACTTAGCGGTGTGCCTCCGTTTTGGGCTGAAACCGAGAAAGGGATATTTG 1123
Query 1148 ATGCTATATTGGAAGGTGAAATCGACTTTGAATCCCAACCTTGGCCCTCAATTTCCAATA 1207
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1124 ATGCTATATTGGAAGGTGAAATCGACTTTGAATCCCAACCTTGGCCTTCAATTTCCAATA 1183
Query 1208 GTGCTAAAGATTTGGTACGTAGAATGTTGACACAAGATCCGAAAAGACGGATTTCTGCTG 1267
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GTGCTAAAGATTTGGTACGCAGAATGTTGACACAAGATCCGAAAAGACGGATTTCTGCTG 1243
Query 1268 CTGAAGTTCTTAAGCATCCATGGCTAAGAGAAGGTGGAGAAGCATCGGATAAGCCTATTG 1327
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1244 CTGAAGTTCTTCAGCATCCATGGCTAAGAGAAGGTGGAGAAGCATCAGATAAGCCTATTG 1303
Query 1328 ATAGTGCTGTTCTCTCAAGGATGAAGCAATTTAGAGCGATGAATAAACTAAAGAAACTTG 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 ATAGTGCTGTTCTCTCAAGGATGAAGCAATTTAGAGCGATGAATAAACTAAAGAAACTTG 1363
Query 1388 CTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAAATACAAGGCTTAAAGGCGATGT 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAAATACAAGGCTTAAAGGCGATGT 1423
Query 1448 TTGCTAATATAGATACAGACAATAGTGGTACTATCACATACGAAGAATTGAAAGAAGGAT 1507
||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 1424 TTGCTAATATAGACACAGACAATAGTGGTACAATCACATATGAAGAACTGAAAGAAGGAT 1483
Query 1508 TAGCCAAACTGGGATCAAGACTCACTGAAGCTGAAGTGAAACAGCTCATGGATGCTGCTG 1567
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 TAGCCAAACTGGGATCAAAACTCACTGAAGCTGAAGTGAAACAGCTCATGGATGCTGCTG 1543
Query 1568 ACGTTGATGGAAATGGGTCAATAGATTACATTGAGTTTATTACTGCAACAATGCATAGAC 1627
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1544 ATGTTGATGGAAATGGGTCAATTGATTACATTGAGTTTATTACTGCAACAATGCATAGAC 1603
Query 1628 ATAGGCTTGAAAGTAATGAGAACGTTTACAAAGCCTTCCAACATTTTGACAAAGATGGGA 1687
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 1604 ATAGGCTTGAAAGTAATGAAAACCTTTACAGAGCCTTCCAACATTTTGACAAAGATGGGT 1663
Query 1688 GTGGATACATTACGACAGACGAGCTAGAGGCTGCTTTGAAGGAATATGGAATGGGAGATG 1747
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 GTGGATACATTACGATAGACGAGCTAGAGGCTGCTTTGAAGGAATATGGAATGGGAGATG 1723
Query 1748 ATGCTACTATCAAAGAGATTTTGTCTGATGTCGACGCTGATAATGACGGTAGAATCAACT 1807
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1724 ATGCTACAATCAAAGAGATTTTGTCAGATGTCGACGCCGATAATGACGGTAGAATTAACT 1783
Query 1808 ATGACGAGTTTTGTGCTATGATGAGAAGTGGGAATCCACAACAACCAAGATTGTTCTAAC 1867
|||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1784 ATGAAGAGTTTTGTGCTATGATGAGAAGTGGGAATCCACAACAACCAAGACTATTCTAAC 1843
Query 1868 ATATTTTATTTGT--CTTCT--GTCTGAATCTAATCAAAAAAGACAAGAGTGGTATTATT 1923
| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1844 ACATTTTATTTGTGTCTTCTATGTCTGAATCTAATCCAAAAAGACAAGAGTTGTATTATT 1903
Query 1924 ATTGTTGTTTAGGCAAAA 1941
||||||||| ||||||||
Sbjct 1904 ATTGTTGTTCAGGCAAAA 1921
> Ahg929969 jgi|Araly1|929969|scaffold_302426.1
Length=1673
Score = 1565 bits (847), Expect = 0.0
Identities = 1210/1385 (87%), Gaps = 26/1385 (2%)
Strand=Plus/Plus
Query 481 ATACTCGAGAAGC-CGTACGAAGACGTGAAACTGTTCTACACTTTGAGCAAAGAATTGGG 539
||||| ||||| | | | |||||| ||||| || |||||||| ||| | ||||| | ||
Sbjct 256 ATACTAGAGAA-CGCTTTCGAAGATGTGAAGCTATTCTACACATTGGGTAAAGAGCTAGG 314
Query 540 TCGAGGCCAGTTTGGAGTAACGTATCTGTGCACAGAGAAGTCGACGGGGAAG-AGATTCG 598
||| || || ||||| ||||||||||||||||||||||| |||||||||||| || | ||
Sbjct 315 TCGTGGGCAATTTGGGGTAACGTATCTGTGCACAGAGAATTCGACGGGGAAGAAG-TACG 373
Query 599 CTTGCAAGTCGATTTCCAAGAAGAAACTTGTGACGAAAGGTGATAAAGAAGATATGAGGA 658
||||||| ||||| || |||||||| || |||||||||| |||||| || ||||||||||
Sbjct 374 CTTGCAAATCGATCTCAAAGAAGAAGCTGGTGACGAAAGCTGATAAGGATGATATGAGGA 433
Query 659 GAGAGATTCAGATTATGCAGCATTTGAGTGGACAACCTAACATTGTTGAGTTTAAAGGAG 718
||||||||||||| ||||||||||||||||| || ||||| || || |||||||||||||
Sbjct 434 GAGAGATTCAGATAATGCAGCATTTGAGTGGGCAGCCTAATATAGTGGAGTTTAAAGGAG 493
Query 719 CTTATGAAGATGAGAAAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGT 778
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 494 CTTATGAGGATGAGAAAGCTGTGAACTTGGTGATGGAGCTTTGTGCTGGTGGTGAATTGT 553
Query 779 TCGATAGGAT-TTTAGCAAAGGGACATTACAGTGAGAGAGCAGCTGCTTCTGTTTGTAGA 837
| ||||| || || || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 554 TTGATAGAATCATT-GCTAAGGGACATTACAGTGAGAGGGCAGCTGCTTCTGTTTGTAGA 612
Query 838 CAGATTGTTAATGTTGTCAATATTTGTCATTTCATGGGTGTGATGCATAGAGACTTAAAG 897
|||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 613 CAGATTGTGAATGTGGTCAAGATTTGTCATTTCATGGGTGTGTTGCATAGAGACTTGAAG 672
Query 898 CCTGAGAATTTCTTG-TTATCTAGCAAAGATGAGAAGGCTCTT-ATCAAAGCCACTGATT 955
||||||||||||||| || ||||||||||||||||||||| || ||||| || |||||||
Sbjct 673 CCTGAGAATTTCTTGCTT-TCTAGCAAAGATGAGAAGGCT-TTGATCAAGGCTACTGATT 730
Query 956 TCGGATTATCAGTCTTTATCGAAGAAGGGAGA-GTGTATAAAGATATAGTTGGGAGTGCA 1014
|||| || || ||||| || ||||| |||| | || |||| |||||| ||||||||||||
Sbjct 731 TCGGCTTGTCTGTCTTCATTGAAGA-GGGAAAAGTATATAGAGATATTGTTGGGAGTGCA 789
Query 1015 TATTATGTTGCTCCTGAAGTTTTGAAG-CGGAGATATGGTAAAGAAATCGATATATGGAG 1073
|| ||||||||||| ||||| || | | || |||||||| |||||| | ||||| |||||
Sbjct 790 TACTATGTTGCTCCAGAAGTCTT-ACGTCGCAGATATGGGAAAGAAGTTGATATCTGGAG 848
Query 1074 TGCTGGAATTATACT-ATACATTCTACTTAGTGGTGTGCCTCCGTTTTGGGCTGAAACGG 1132
||||||||| || || |||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 849 TGCTGGAATCAT-CTTATACATTCTACTCAGCGGTGTGCCCCCGTTTTGGGCTGAAACCG 907
Query 1133 AGAAAGGGATATTTGATGCTATATTGGAAGGTGAAATCGACTTTGA-ATCCCAACCTTGG 1191
||||||| ||||||||||||||||||||||| | ||||||||||| | || |||| |||
Sbjct 908 AGAAAGGAATATTTGATGCTATATTGGAAGGCCATATCGACTTTGAGAGCC-AACCATGG 966
Query 1192 CCCTCAATTTCCAATAGTGCTAAAGATTTGGTACGTAGAATGTTGACA-CAAGATCCGAA 1250
|| ||||| ||||| ||||| |||||||||||||||||||||||||| | ||||| ||
Sbjct 967 CCGTCAATCTCCAACAGTGCCAAAGATTTGGTACGTAGAATGTTGACTGCG-GATCCAAA 1025
Query 1251 AAGACGGATTTCTGCTGCTGAAGTTCTT-AAGCATCCATGGCTAAGAGAAGGTGGAGAAG 1309
||| || |||||||||||||| |||||| || ||||||||||| ||||||||||||||||
Sbjct 1026 AAGGCGTATTTCTGCTGCTGATGTTCTTCAA-CATCCATGGCTTAGAGAAGGTGGAGAAG 1084
Query 1310 CATCGGATAAGCCTATTGATAGTGCTGTTCTCTCAAGGATGAAGCAATTTAGAGCGATGA 1369
|||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1085 CATCAGACAAGCCAATTGACAGTGCTGTTCTCTCAAGGATGAAACAATTTAGAGCAATGA 1144
Query 1370 ATAAACTAAAGAAACTTGCTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAAATAC 1429
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1145 ATAAGCTAAAGAAACTTGCTTTAAAGGTCATAGCGGAGAATATTGACACGGAAGAAATCC 1204
Query 1430 AAGGCTTAAAGGCGATGTTTGCTAATATAGATACAGACAATAGTGGTACTATCACATACG 1489
|||| || ||||| ||||||||||| ||||| |||||||| ||||| || ||||| || |
Sbjct 1205 AAGGATTGAAGGCAATGTTTGCTAACATAGACACAGACAACAGTGGCACAATCACGTATG 1264
Query 1490 AAGAATTGAAAGAAGGATTAGCCAAACTGGGATC-AAGACTCACTGAAGCTGAAGTGAAA 1548
||||| |||||||||||||||||||| ||||||| || |||||| || || |||||||||
Sbjct 1265 AAGAACTGAAAGAAGGATTAGCCAAATTGGGATCTAA-ACTCACAGAGGCAGAAGTGAAA 1323
Query 1549 CAGCTCATGGATGCTGCTGACGTTGATGGAAATGGGTCAATAGATTACATTGAGTTTATT 1608
|||||||||||||||||||| |||||||| || |||||||| || ||||| |||||||||
Sbjct 1324 CAGCTCATGGATGCTGCTGATGTTGATGGGAACGGGTCAATCGACTACATAGAGTTTATT 1383
Query 1609 ACTGCAACAATGCATAGACATAGGCTTGAAAGTAATGAGAA-CGTTTACAAAGCCTTCCA 1667
|| |||||||||||||| || |||||||||||||||||||| | |||||||||| |||||
Sbjct 1384 ACCGCAACAATGCATAGGCACAGGCTTGAAAGTAATGAGAATC-TTTACAAAGCTTTCCA 1442
Query 1668 ACATTTTGACAAAGATGGGAGTGGATACATTACGACAGACGAGCTAGAGGCTGCTTTGAA 1727
|||||||||||||| | || ||||||||||| | |||||| | || |||| |||||
Sbjct 1443 GCATTTTGACAAAGACAGCAGCGGATACATTACAATAGACGAATTGGAATCTGCATTGAA 1502
Query 1728 GGAATATGGAATGGGAGATGATGCTACTATCAAAGAGATTTTGTCTGATGTCGACGCTGA 1787
|||||||||||||||||||||||| || ||||||||| || |||| ||||||||| | ||
Sbjct 1503 GGAATATGGAATGGGAGATGATGCAACAATCAAAGAGGTTCTGTCAGATGTCGACTCGGA 1562
Query 1788 TAATGACGGTAGAATCAACTATGACGAGTTTTGTGCTATGATGAGAAGTGGGAATCCACA 1847
||| || ||||||||||||||||| ||||| || || |||||||||||||| ||||||||
Sbjct 1563 TAACGATGGTAGAATCAACTATGAAGAGTTCTGCGCAATGATGAGAAGTGGAAATCCACA 1622
Query 1848 ACAAC 1852
|||||
Sbjct 1623 ACAAC 1627
> Ahg339776 jgi|Araly1|339776|fgenesh1_pg.C_scaffold_2001875
Length=2793
Score = 379 bits (205), Expect = 4e-104
Identities = 731/977 (75%), Gaps = 67/977 (7%)
Strand=Plus/Plus
Query 687 TGGACAACCTAACATTGTTGAGTTTAAAGGAGCTTATGAAGA-TGAGA-AAGCTGTGAAT 744
||| ||||| ||||| || |||||| ||| || |||||||| ||| || || | ||
Sbjct 420 TGGTCAACCGAACATCGTCGAGTTTCGAGGTGCGTATGAAGACAAAGACAATCT-T-CAT 477
Query 745 TTGGTTATGGAGCTTTGTGCTGGTGGTGAATTGTTCGATAGGAT--TTTAGCAAAGGGAC 802
|||||||||||||| ||| |||| || || |||| ||| | || | || ||| |||
Sbjct 478 TTGGTTATGGAGCTCTGTTCTGGAGGAGAGCTGTTTGATCGTATCATCAAG-AAA-GGA- 534
Query 803 A-TTACAGTGAGAGAGCAGCTGCTTCTGT-TTGTAGACAGATTGTTAATGTTG-TCAATA 859
| |||| ||||| || ||||||| | | || |||||||| |||||||||| || ||
Sbjct 535 AGTTACTCTGAGAAAGAAGCTGCTAATATCTT-CAGACAGATCGTTAATGTTGTTC-ATG 592
Query 860 TTTGTCATTTCATGGGTG-TGATGCATAGAGACTTAAAGCCTGAGAATTTCTTG-TTATC 917
|||||||||||||||| | || | |||||||||||||||||||||||||||||| || |
Sbjct 593 TTTGTCATTTCATGGGCGTTG-TTCATAGAGACTTAAAGCCTGAGAATTTCTTGCTTGT- 650
Query 918 TAGCAAAGATGAGAAGGCTCTT--ATCAAAGCCACTGATTTCGGATTATCAGTCTTT-AT 974
||| || || ||||| ||| |||||||| || ||||| || | || || ||| ||
Sbjct 651 TAGTAATGA--AGAAGATTCTCCCATCAAAGCAACAGATTTTGGCCTCTCTGT-TTTCAT 707
Query 975 CGAAGAAGGGAGAGTGTATAAAGATATAGTTGGGAGTGCATATTATGTTGCTCCTGAAGT 1034
||||||||| | |||||||| ||||||||||||||| ||||| || ||||| ||||||||
Sbjct 708 CGAAGAAGGTAAAGTGTATAGAGATATAGTTGGGAGCGCATACTACGTTGCACCTGAAGT 767
Query 1035 TTTGA-AGCGGAGATATGGTAAAGAAATCGATATATGGAGTGCTGGAATTATACTATACA 1093
| | | | || || || || ||||| |||||| |||||||||| || | || || ||||
Sbjct 768 TCT-ACATCGAAGCTACGGGAAAGAGATCGATGTATGGAGTGCAGGTGTCATGCTTTACA 826
Query 1094 TTCTACTTAGTGGTGTGCCTCCGTTTTGGGCTGAAACGGAGAA-AGGGATATTTGATGCT 1152
|||| || |||||||| ||||| ||||||| || || ||||| | |||||||| ||
Sbjct 827 TTCTTCTCAGTGGTGTTCCTCCATTTTGGGGAGAGACCGAGAAGACT-ATATTTGAGGCG 885
Query 1153 ATATTGGAAGGTGAAA-TCGA-CTTTGAATCC-CAACCTTGGCCCT-CAATTTCC-AATA 1207
|| || ||||| || | || ||| ||| | | |||||||| | | || || || |
Sbjct 886 ATCTTAGAAGGC-AAGCTGGATCTT-GAAACTTCT-CCTTGGCC-TACTATATCGGAA-A 940
Query 1208 GTGCTAAAGATTTGGT-ACGTAGAATGTTGACACA-AGATCCGAAAAGACGGATTTCTGC 1265
| || ||||||||| | | | | |||||||||| | |||||| |||| | ||||| | ||
Sbjct 941 GCGCAAAAGATTTGATTA-GAAAAATGTTGACA-ATAGATCCTAAAAAAAGGATTACCGC 998
Query 1266 TGCTGAAGTTCTTAAGCATCCATGGCTAAGAGAAGGTGGAGAAGCATCGGATAAGCCTAT 1325
||||||| ||| ||||||||||| | | | || | | || ||| ||||| || ||
Sbjct 999 AGCTGAAGCACTTGAGCATCCATGGATGACA-AACA-GCAAAAT-ATCAGATAAACCAAT 1055
Query 1326 TGATAGTGCTGTTCTC-TCAAGGATGAAGCAATTTAGAGCGATGAATAAACTAAAGAAAC 1384
||||| |||||||| | | |||||||||| || | || ||||| || || |||||||
Sbjct 1056 CGATAGCGCTGTTCTTATTA-GGATGAAGCAGTTCCGTGCAATGAACAAGCTCAAGAAAC 1114
Query 1385 TTGCTTTAAAGGTCATTGCGGAGAACATTGACACGGAAGAA-ATACAA-GGC-TTAAAGG 1441
|||| || ||||| || ||||| ||| || | |||||||| | | || || ||||||
Sbjct 1115 TTGCCTTGAAGGTGATAGCGGAAAAC-TT-AT-CGGAAGAAGAGATAAAGGGATTAAAG- 1170
Query 1442 CGA-TGTTTGCTAATATAGATACAGACA-ATAGTGGTACTATCACATACGAAGAATTGA- 1498
| | ||||| || || |||||||| | ||||| || ||||| | || ||| | |
Sbjct 1171 CAAATGTTTAAGAACATGGATACAGATGGA-AGTGGCACAATCACTTTTGATGAACTAAG 1229
Query 1499 AAGAAGGATTAGC--CAAACTGGGATC-AAGACTCACTGAAGCTGAAGTGAAACAGCTCA 1555
||| || ||| | | || ||||| ||| || | ||| ||||| | ||||| ||||
Sbjct 1230 AAGCGGG-TTA-CATCGT-CTTGGATCTAAG-CTTTCAGAATCTGAAATCAAACAACTCA 1285
Query 1556 TGGATGCTGCTGACGTTGATGGAAA-TGGGTCAATAGATTACATTGAGTTTATTACTGCA 1614
|||| ||||| || || || ||| |||| | || || |||||||||||||| ||||||
Sbjct 1286 TGGAAGCTGCCGATGTAGACA-AAAGTGGGACGATTGACTACATTGAGTTTATAACTGCA 1344
Query 1615 ACAATGCATAGACATAG 1631
||||||||| | |||||
Sbjct 1345 ACAATGCATCGCCATAG 1361
> Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1
Length=2289
Score = 200 bits (108), Expect = 3e-50
Identities = 479/650 (74%), Gaps = 58/650 (9%)
Strand=Plus/Plus
Query 598 GCTTGCAAGTCGATTTCCAAGAAGAAACTT-GTGA-CGAAAGGTGATAAAGAAGATATGA 655
||||| ||||| || ||||||| |||| || | | | |||| ||| |||||| | |
Sbjct 649 GCTTGTAAGTCTATATCCAAGAGGAAA-TTAAT-ATCTAAAGAAGATGTTGAAGATGTTA 706
Query 656 GGAGAGAGATTCAGATTATGCAGCATTTGAG-TGGACAAC-CTAACATTGTTGA-GTTTA 712
|||| ||||||||||| ||||| ||||| || ||| | || ||||||||| | | |||
Sbjct 707 GGAGGGAGATTCAGATAATGCATCATTT-AGCTGG-CCACAAGAACATTGTT-ACGATTA 763
Query 713 AAGGAGCTTATGAAGATGAGAAAG-CTG-TGA-ATTTGGTTATGGAGCTTTGTGCTGGTG 769
||||||||||||| ||| | || | | | || || |||||||||||||||||||
Sbjct 764 AAGGAGCTTATGAGGAT-CCTTTGTTTGTTCACA-TT-GTGATGGAGCTTTGTGCTGGTG 820
Query 770 GTGAATTGTTCGATAGGATT-TTAGCA-A-AGGGACATTACAGTGAGA-GAGCAGCTGCT 825
|||| || || ||||||||| || || | |||| |||||||| |||| || ||||||
Sbjct 821 GTGAGTTATTTGATAGGATTATT--CATAGAGGG-CATTACAGCGAGAGGA-AAGCTGC- 875
Query 826 TCTGTTTGTAGAC-AG---ATTGTTAATGTTGTCAATATTTGTCATTTC-ATGGGTGTGA 880
| | ||| | | || ||||| ||||| | ||||| ||| | ||||| |
Sbjct 876 TGAG-TTG-A-CCAAGATCATTGTCGGGGTTGTTGAGGCGTGTCA-TTCGCTTGGTGTTA 931
Query 881 TGCATAGAGACTTAAAGCCTGAGAATTTCTTGTTA-TCTAGCAAAGATGA-GAAGGCTCT 938
|||||||||||||||||||||||||||||||||| | || || ||||| || |||
Sbjct 932 TGCATAGAGACTTAAAGCCTGAGAATTTCTTGTTGGT-TAATAAGGATGATGATTTTTCT 990
Query 939 -TATCAAAGCCACTGATTTCGGATTATCAGTCTTTAT-CGAAGAAGGG-AGAGTGTATAA 995
| | || |||| |||||| || | || || ||| | | || ||| | | | | | |
Sbjct 991 CT-T-AAGGCCATTGATTTTGGCCTCTCTGT-TTTCTTCAAACCAGGCCAAA-TAT-TCA 1045
Query 996 AG-ATATAGTTGGGAGTGCATATTATGTTGCTCCTGAAGTT-TTG--AAGCGGAGATATG 1051
|| || ||||||| ||| |||| |||||||||||||| ||| || || | | ||||
Sbjct 1046 AGGATGTAGTTGGAAGTCCATACTATGTTGCTCCTGAGGTTCTTCTTAAAC--AT-TATG 1102
Query 1052 GTAAAGAAA-TCGATATATGGAGTGCTGGAATTATACTATACATTCTACTTAGTGGTGTG 1110
|| |||| | ||| | |||| |||||| |||||||||||||| |||| ||||||||
Sbjct 1103 GTCCAGAAGCT-GATGTGTGGACTGCTGGTGTTATACTATACATTTTACTAAGTGGTGTC 1161
Query 1111 CCTCCGTTTTGGGCTGAAACGGAGAAAGGGATATTTGATGCTATATTGGAAGG-TGAAAT 1169
|| || |||||||| ||||| || |||| |||||||||||| | ||| |||| | | ||
Sbjct 1162 CCGCCTTTTTGGGCAGAAACACAGCAAGGAATATTTGATGCTGTGTTGAAAGGAT-ATAT 1220
Query 1170 CGACTTTGAATCCCAACCTTGGCCC-TCAATTTCCAATAGTGCTAAAGAT 1218
||||||||| || | || ||||| | | | ||| | ||||||||||||
Sbjct 1221 CGACTTTGAGTCAGACCCGTGGCCTGTGA-TATCCGACAGTGCTAAAGAT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77589829065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5