BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50732.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923527 jgi|Araly1|923527|scaffold_104808.1                        562    9e-160


> Ahg923527 jgi|Araly1|923527|scaffold_104808.1
Length=398

 Score =  562 bits (304),  Expect = 9e-160
 Identities = 356/381 (93%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  77   AAATTTGTGTCTGAAAAATGTGGTGTGCTTGCTATCATCAGCCATTACCTGCCAGTTCCG  136
            ||||||  ||| |||||||||||||||| || |||||||||||||||| ||| |||||||
Sbjct  8    AAATTTAAGTCCGAAAAATGTGGTGTGCATGTTATCATCAGCCATTACTTGCTAGTTCCG  67

Query  137  TCGTGTTGAATCAGCAGGCGAAGCAAGAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT  196
            |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  68   TCGTGTTGAATCGGCAGGCGAAGCAAAAAGAGAGTCTGAGAAGAAAACAAGTGTTCTTCT  127

Query  197  TCTTATCCTCATCATCTCCTTCAAGCTTAAGCACCAAACATCAATGGCAAATCAGTAATT  256
            || ||| | | ||||||||||||||||||||   ||||||||||| ||||||||||||||
Sbjct  128  TCATAT-C-C-TCATCTCCTTCAAGCTTAAGTGGCAAACATCAATCGCAAATCAGTAATT  184

Query  257  ATCCTAAAAATGGGTTCAGACTAAAACCAAAAGCGAGTGTGTTGCCTCCTTCTGAGTCTG  316
            |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  185  ATCCTAAAAATGGGCTCAGACTAAAACCAAAGGCGAGTGTGTTGCCTCCTTCTGAGTCTG  244

Query  317  GTGATATCACTACATTCCTCTTTGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA  376
            ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  245  GTGATATCACTACCTTCCTCCTCGTTAGTGGAGCAATGATCTCCATGTATTTGGTAACCA  304

Query  377  ATTTTCTGGTTCCATCGTTGCTTTTCAAGTCTCTCCAAGGTGAAGAAGAGGAAGAAGAGG  436
            ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct  305  ATTTTCTGGTTCCATCGTTGCTTTTTAAGTCGCTCCAAGGTGAAGAAGAGGAAGAAGATG  364

Query  437  AAGACTCCGATTAAACTATGA  457
            |||||||||||||||||||||
Sbjct  365  AAGACTCCGATTAAACTATGA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5