BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50740.1

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923528 jgi|Araly1|923528|scaffold_104809.1                        532    1e-150


> Ahg923528 jgi|Araly1|923528|scaffold_104809.1
Length=402

 Score =  532 bits (288),  Expect = 1e-150
 Identities = 366/403 (91%), Gaps = 8/403 (2%)
 Strand=Plus/Plus

Query  171  AACCCAGCTCGAGAATATAATGCACGATTTCTGCTTCACTATCCCGTACGGGATCCT-TC  229
            |||||||||||||     |||||||||||||||||||||||||||||||||||| || | 
Sbjct  7    AACCCAGCTCGAG-----AATGCACGATTTCTGCTTCACTATCCCGTACGGGATGCTAT-  60

Query  230  TGATCGTCGGAGGATTTATCGGGTATCTGAAGAAAGGAAGTATTGCATCTCTCGCCGGAG  289
            | |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  61   TCATCGTCGGAGGATTTATCGGATATTTGAAGAAAGGAAGTATTGCATCTCTCGCCGGAG  120

Query  290  GAGCAGGCACTGGATTGCTTGTCGTTCTCGCTGGTTTCATCAGCCTTAAAGCTTTCGAGA  349
            | ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct  121  GTGCAGGCACTGGATTGCTTGTCGTGCTCGCTGGATTCATTAGCCTTAAAGCTTTCGAGA  180

Query  350  AGAAGAAGACATCGTTACTCGCTACTCTTCTCGAAACAGTCATTGCAGCTGCTCTCACAT  409
            |||||||||| || | |||||| ||| ||||| |||||||||||||||||||||| ||||
Sbjct  181  AGAAGAAGACTTCCTCACTCGCAACTGTTCTCCAAACAGTCATTGCAGCTGCTCTTACAT  240

Query  410  TTGTCATGGGACAACGGTTCTTGCAGACTCAGAAGATTATGCCAGCTGCTTTGGTAGCTG  469
            |||||||||||||||| |||||||| |||||||||||||| || |||| |||||| ||||
Sbjct  241  TTGTCATGGGACAACGTTTCTTGCAAACTCAGAAGATTATACCGGCTGGTTTGGTTGCTG  300

Query  470  GAATCAGTGCTCTCATGACTTGTTTCTACGTATACAAGATCGCAACTGGCGGCAACCACA  529
            ||||||||||| ||||||| |||||||| |||| ||||||||| ||||| ||||||||||
Sbjct  301  GAATCAGTGCTATCATGACCTGTTTCTATGTATTCAAGATCGCGACTGGTGGCAACCACA  360

Query  530  TACCACCGAAAGCTGAATGATTAGTGTTATACACTCCGGTTGT  572
            ||||||||||||||||||||| ||||||||  |||||||||||
Sbjct  361  TACCACCGAAAGCTGAATGAT-AGTGTTATGTACTCCGGTTGT  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29087785671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5