BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50780.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936960 jgi|Araly1|936960|scaffold_501151.1 645 0.0
Ahg936984 jgi|Araly1|936984|scaffold_501175.1 418 4e-116
Ahg323092 jgi|Araly1|323092|fgenesh1_pm.C_scaffold_5000636 165 6e-40
> Ahg936960 jgi|Araly1|936960|scaffold_501151.1
Length=870
Score = 645 bits (349), Expect = 0.0
Identities = 710/869 (82%), Gaps = 86/869 (10%)
Strand=Plus/Plus
Query 165 TCTTCTCTC--CAACCAACATAGCCGT-TTTGTAACTTCTCCTGATGAGAACTCCGACGT 221
||||||||| | ||||||| ||||| || ||||| ||||| || ||||||||||||||
Sbjct 7 TCTTCTCTCTGGAGCCAACATGGCCGTCTTCGTAACCTCTCCGGACGAGAACTCCGACGT 66
Query 222 CGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCTCAACGG 281
||||| || ||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 67 TGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCTCAACGG 126
Query 282 CAAGTCTCCTCCCAAGACTACTATTAAC-CCCGAAT-C-A-TCCA-AGTTTTGGTGGGAA 336
|||||||||||||||| || ||||||| | | ||| | | | | |||||||||||||
Sbjct 127 CAAGTCTCCTCCCAAG-CT--TATTAACTCTC-AATCCAAGT-TAGGGTTTTGGTGGGAA 181
Query 337 GACCCTAATCTCTA-CGGTGATTGTGACGATTTGTCTGAGTTAAGA-ATCATCGAAGATC 394
|||||| |||| || | || ||||||||||| | |||||||||| | | |||||||||||
Sbjct 182 GACCCTGATCTATATC-GTTATTGTGACGATCTCTCTGAGTTAA-ATACCATCGAAGATC 239
Query 395 GTCTGATGAGAACGAAGAAGCATCTCATGGATTGTCTTGAGAAGAAAGAAAAATCATACT 454
|| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 240 GTATGATGAGAACGAGGAAGCATCTGATGGATTGTCTTGAGAAGAAAGAAAAATCACAAT 299
Query 455 CTGTTTCTAAATCTGATCAAAACCCTAAGAACAACGGTGGGtcttc--t--t-cttcttc 509
||||||||| || |||||||||||||| | | || | | | ||| | | | ||
Sbjct 300 TTGTTTCTAATTCCGATCAAAACCCTAACACCGAC-G-AGATATTCAATAATGGTGGGTC 357
Query 510 ttcttcttcttcttctCAAATTGCTTCTGATTTTGGTCAAAACCCTAGTA--------CC 561
||||||||||||||||||||||||||||||||| || ||||||||||||| ||
Sbjct 358 TTCTTCTTCTTCTTCTCAAATTGCTTCTGATTTAGGCCAAAACCCTAGTACCTCTTCTCC 417
Query 562 -TCTT-CTC-C-----G-TT-TTTTGATCACCACTCTT--A-CT-CC-T--C--G--CT- 599
|||| ||| | | || ||||||||| |||||| | || || | | | |
Sbjct 418 GTCTTCCTCACAGATTGTTTCTTTTGATCAGAACTCTTACACCTCCCTTGGCAAGTTATG 477
Query 600 T---GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTATTTTCTCTGTTGG 656
| |||||||||||||||| | |||||||| |||||||||||||| ||||||||| |
Sbjct 478 TGGCGAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTAACTTCTCTGTT-G 533
Query 657 CAGCGAGTCA-TCATCTGATCAATTTCGTTACTTGGTGAATGAAGATGCTGGATTTGTTG 715
|||||| | |||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 534 --GCGAGT-ACTCATATGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTGTTG 590
Query 716 ACTGCTTATTTGAAACAGAGGAGGAGAAGAACAGAATGATTGTACCCCAAGAAACACAAA 775
||||||||| |||||||||||||||||| ||| |||||| | | || ||||||||||| |
Sbjct 591 ACTGCTTATGTGAAACAGAGGAGGAGAATAACGGAATGAGTCTTCCTCAAGAAACACAGA 650
Query 776 CACAACCGATGTTCTCTGAGGAGGATCAGAGCTTTTGGGAAAA-C---CT-A-GATGTCG 829
||| | || ||||| || ||||||||||||||||||||||| | | | |||| |
Sbjct 651 CACCATCGTTGTTCACT---GAGGATCAGAGCTTTTGGGAAAATCTATTTAAGGATGAAG 707
Query 830 ACGACGTGTTTGGTCTTTTTAACGACGACACCAACCTTGAGGTTCCTCTTCAAGATCATT 889
|| |||||||||||||| || | ||| | |||||||||||||||||||||||||||||
Sbjct 708 ACAACGTGTTTGGTCTTCTT-A--ACG--A-CAACCTTGAGGTTCCTCTTCAAGATCATT 761
Query 890 CCTCAACCAACGAAGAAGA---CGAGTTTATGATTGATATCAGTGAATACTTAAGCGAAG 946
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 762 CCTCAACCAACGAAGAAGAAGACGAGTTTATGATCGATATCAGTGAATTCTTAAGCGAAG 821
Query 947 AAGCA-A-TG-GAATGGCCCATGTTTTAG 972
||| | | | ||||||||| ||||||||
Sbjct 822 AAGAAGAATTCGAATGGCCCCTGTTTTAG 850
> Ahg936984 jgi|Araly1|936984|scaffold_501175.1
Length=1006
Score = 418 bits (226), Expect = 4e-116
Identities = 335/383 (87%), Gaps = 25/383 (7%)
Strand=Plus/Plus
Query 601 GAGCCTTCGTCACAAGTTACTACTTGTTTTGATCAAAACCCTATTTTCTCTGTTGGCAGC 660
|||||||||||||||| | |||||||| ||||||||||||||| ||||||||| | ||
Sbjct 618 GAGCCTTCGTCACAAG-T--TACTTGTTATGATCAAAACCCTATCTTCTCTGTT-G--GC 671
Query 661 GAGTCATCATCTGATCAATTTCGTTACTTGGTGAATGAAGATGCTGGATTTGTTGACTGC 720
||||||| || |||||||| |||||||||||||||||||||| ||||||||||| |||||
Sbjct 672 GAGTCATTATGTGATCAATCTCGTTACTTGGTGAATGAAGATCCTGGATTTGTTAACTGC 731
Query 721 TTATTTGAAACAGAGGAGGAGAAGAACAGAATGATTGTACCCCAAGAAACACAAACACAA 780
|||| |||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||||
Sbjct 732 TTATGTGAAACAGGGGAGGAGAATAACGGAATGAGTGTAGCCCAAGAAACACAAACACAA 791
Query 781 CCGATGTTC-TCTGAGGAGGATCAGAGCTTTTGGGAAAA-C--C-T--AGATGTCGACGA 833
||||| || | ||| | |||||||||||||||||||| | | | ||||| |||| |
Sbjct 792 TCGATGCTCAT-TGA--A-GATCAGAGCTTTTGGGAAAACCTACTTAAAGATGACGACAA 847
Query 834 CGTGTTTGGTCTTTTTAACGACGACACCAACCTTGAGGTTCCTCTTCAAGATC-ATTCCT 892
||||||||||||| |||||||| | | |||||||||||||||||||||||||| || |||
Sbjct 848 CGTGTTTGGTCTTCTTAACGAC-A-A-CAACCTTGAGGTTCCTCTTCAAGATCGAT-CCT 903
Query 893 CAACCAACGAAGAAGACGAGTTTATGATTGATATCAGTGAATACTTAAGCGAAGAAGCA- 951
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 904 CAACCAACGAAGAAGACGAGTTTATGATCGATATCAGTGAATTCTTAAGCGAAGAAGAAG 963
Query 952 A-TG-GAATGGCCCATGTTTTAG 972
| | ||||||||| ||||||||
Sbjct 964 AATTCGAATGGCCCCTGTTTTAG 986
Score = 329 bits (178), Expect = 2e-89
Identities = 279/326 (86%), Gaps = 13/326 (4%)
Strand=Plus/Plus
Query 165 TCTTCTCTCC--AACCAACATAGCCGT-TTTGTAACTTCTCCTGATGAGAACTCCGACGT 221
|||||||||| | ||||||| ||||| || ||||| ||||| || |||||||||||| |
Sbjct 185 TCTTCTCTCCGGAGCCAACATCGCCGTCTTCGTAACCTCTCCGGACGAGAACTCCGACAT 244
Query 222 CGTTTATTCATTCTCGGGCTACTCTCATGCCTCTGAAATTGTTGACTGTTACCTCAACGG 281
||||| || ||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 245 TGTTTACTCCTTCTCCGGCTACTCTCCTGCCTCTGAAATTGTTGATTGTTACCTCAACGC 304
Query 282 CAAGTCTCCTCCCAAGACTACTATTAACCC-CGAAT-C-A-TCCA-AGTTTTGGTGGGAA 336
||||||||||||| | | || ||||||||| | ||| | | | | |||||||||||||
Sbjct 305 CAAGTCTCCTCCC-A-A-TATTATTAACCCTC-AATCCAAGT-TAGGGTTTTGGTGGGAA 359
Query 337 GACCCTAATCTCTACGGTGATTGTGACGATTTGTCTGAGTTAAGAATCATCGAAGATCGT 396
|||||| |||||||| | ||||||||||| | ||||||||||| ||||| |||||||||
Sbjct 360 GACCCTGATCTCTACCTTTATTGTGACGATCTCTCTGAGTTAAGTATCATTGAAGATCGT 419
Query 397 CTGATGAGAACGAAGAAGCATCTCATGGATTGTCTTGAGAAGAAAGAAAAATCATACTCT 456
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 420 ATGATGAGAACGAAGAAGCATCTGTTGGATTGTCTTGAGAAGAAAGAAAAATCACAATTT 479
Query 457 GTTTCTAAATCTGATCAAAACCCTAA 482
|||| ||||| ||||||||||||||
Sbjct 480 CTTTCGAAATCCGATCAAAACCCTAA 505
> Ahg323092 jgi|Araly1|323092|fgenesh1_pm.C_scaffold_5000636
Length=3957
Score = 165 bits (89), Expect = 6e-40
Identities = 96/99 (97%), Gaps = 1/99 (1%)
Strand=Plus/Plus
Query 79 AACTTTGTTGGAG-TTCTTCGTTATCAGACTTCTTTCAAGAGCGTTAAGCTCAGCTGCGG 137
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 69 AACTTTGTTGGAGTTTCTTCGTTATCAGACTACTTGCAAGAGCGTTAAGCTCAGCTGCGG 128
Query 138 TGAAGGAGGATGTGGTGCTTGTGTTGTTCTTCTCTCCAA 176
|||||||||||||||||||||||||||||||||||||||
Sbjct 129 TGAAGGAGGATGTGGTGCTTGTGTTGTTCTTCTCTCCAA 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5