BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50790.1
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923533 jgi|Araly1|923533|scaffold_104814.1 610 2e-173
Ahg914950 jgi|Araly1|914950|Al_scaffold_0001_5204 425 6e-118
Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242 248 1e-64
> Ahg923533 jgi|Araly1|923533|scaffold_104814.1
Length=718
Score = 610 bits (330), Expect = 2e-173
Identities = 454/512 (89%), Gaps = 16/512 (3%)
Strand=Plus/Plus
Query 1836 TGTTGTATCAGCACCAGAGACAATGAC-AT-T-CTG-TGA---TGATGTATATGGAAACA 1888
||||||||||||||||||||||| | | | | || ||| | |||||||||||| ||
Sbjct 209 TGTTGTATCAGCACCAGAGACAA-GTCTCTGTGATGTTGAGCTTAATGTATATGGAAGCA 267
Query 1889 ATGCAGAGAAGAAGACTATGATCGATGATGACAGCGAGGAATTAAAGTGTTTGCTCCATG 1948
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 268 ATGCAGAGAAGAAGACTATGATCGATGATGACAACGAGGAACCAAAGTGTTTGCCCCATG 327
Query 1949 AAGATGGTACCATAACTAGAGAAATGGCGAGATCAGATAAGAAGTGTTGCAGTGAAGCTG 2008
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 328 AAGATGGTACCATAACTAGAGAAATGGTGAGATCAGATAAGAAGTGTTGCAGTGAAGCTG 387
Query 2009 AGAAGGAAGATGCTGATGGAGGGATCAGTGACAAGGTTCTAGCATCAAAGGCAGACAACA 2068
|||||||||||||||||||| |||||| ||| ||||| ||||||| ||||||||||||||
Sbjct 388 AGAAGGAAGATGCTGATGGAAGGATCAATGAGAAGGTGCTAGCATTAAAGGCAGACAACA 447
Query 2069 AAAAATCGATCCCTTATCAAAAACTTGCTTCTGGATGCGCTAATGGAGATGAGACAAGCA 2128
||| ||| | ||| ||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 448 AAATATCCAAACCTCATCAAAAGCTTGCTTCTGGATGCGCTAATGGAGATAAAACAAGCA 507
Query 2129 AAGCATATAAGCCTAAGGTACTGAAGCGGTCTGATGGAAATCAGGCTCATGCTTGTTTGC 2188
|||||||| ||| |||||| || |||| |||||||| |||||| || ||||||||||
Sbjct 508 AAGCATATCAGCGTAAGGTTCTAAAGCCATCTGATGGTGATCAGGGACAGGCTTGTTTGC 567
Query 2189 TTCCTG-ATGATGGAATCAGAAGTGAAGAAACTATGAAATCCAACGAGCAGTTAAAGGTT 2247
|| || | ||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 568 GTCATGGA-GATGGCATCGGAAGTGAAGAAACTATGAAATCCAATGAGCAGTTAAAGGTT 626
Query 2248 TTTGAAAAGAGAAACAATGATTTGGGTGAGGGTGATGTTGATAATGACACCACTGAAAAG 2307
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 627 TTTGAAAAGAGAAACAATGATTTGGGTGAGGGTGAT----A-A-TGACACCACTGAAAAG 680
Query 2308 AGATCTCAAAAGCTGAATGTGCTGGCATTGTC 2339
|||| |||||||||| | ||||||||||||||
Sbjct 681 AGATTTCAAAAGCTGTAGGTGCTGGCATTGTC 712
> Ahg914950 jgi|Araly1|914950|Al_scaffold_0001_5204
Length=606
Score = 425 bits (230), Expect = 6e-118
Identities = 402/484 (83%), Gaps = 15/484 (3%)
Strand=Plus/Plus
Query 809 TCAATGTTTGGATTTGGGAGAGATTCAGGGCACTACAATCAAAACCCAATCTGTTGTTAA 868
|||| ||||||| ||||| ||||| |||| ||||||| ||||||| ||| |||| ||
Sbjct 6 TCAA-GTTTGGACATGGGAAAGATTTAGGGAACTACAACCAAAACCTAATAAGTTGCTAC 64
Query 869 AAGGTGAGCCAAGATTGGCTCTTTGGAATGACCTGAAACAG-AGAACCAGCAATGCAAAG 927
||||| |||||||||||| |||||| ||||| |||||||| | |||||| ||| |||
Sbjct 65 AAGGTCAGCCAAGATTGGGGCTTTGGGATGACTTGAAACAGCA-AACCAGGGATGTGAAG 123
Query 928 CGGATTCT-GAACAACTCGAAAATCGATGGTTTTGAGTGGTGTCCATACACAAAAACTGT 986
| |||| | ||| ||||||||||| || ||||||||||| |||| ||||||| ||||||
Sbjct 124 CAGATTTTGGAA-AACTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACACAAGAACTGT 182
Query 987 GAAAAACTGGGACTTTCCTCAGTTTTATCCTGAGAAAGCGACGTGGGTGACT-CTTGTTC 1045
|| ||||||| | |||||| ||||||| || |||||||||| ||| || ||| ||| ||
Sbjct 183 GACAAACTGGAAGTTTCCTAAGTTTTACCCCGAGAAAGCGATGTGTGTTACTGTTTG-TC 241
Query 1046 CCAACCGTGATGATGAATTTATCTCCTTTGCTCGATGCATTATGGTGTCTCAGCTTGTTG 1105
| | | |||||| |||||||||||||||||||||||||| | || ||| |||||||||
Sbjct 242 CGAGTCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTG 301
Query 1106 GCATT--GACAGTTTGGAGCATTACTATCCC-AATCGGGTGGCTTCACAGTTTGGGAGGC 1162
||||| || || |||||||||||| |||| ||| | |||||| |||||||||| | ||
Sbjct 302 GCATTAAGAAAG--TGGAGCATTACT-TCCCAAATAGAGTGGCTACACAGTTTGGAATGC 358
Query 1163 TTCAGGATGTGCATTGTCC-TGTTAACCGGAACAACCTCTCACGTGAGGCAGCTTGGAAT 1221
|||||||| | | || || |||| || |||||||||||||||| |||||||||||||||
Sbjct 359 TTCAGGATATTCCTT-CCCTTGTTGACAGGAACAACCTCTCACGGGAGGCAGCTTGGAAT 417
Query 1222 GATTACTACAAGCCTCTTGATGATTTGGAATTATACATTCCTTCCCGTTCTGCAATATCT 1281
|||||| | |||||| || ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 418 GATTACAATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTGCAATATCT 477
Query 1282 TGTG 1285
||||
Sbjct 478 TGTG 481
> Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242
Length=339
Score = 248 bits (134), Expect = 1e-64
Identities = 159/171 (93%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 105 TCAGAAACGCTCAGCTCCTTCTCCTGACTTAGAAGCTCTTTCCACGAGTGTT-ACTTTCT 163
||| |||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||
Sbjct 339 TCATAAACGCTCAGCTCCTTCTCCTGACTTGGAAGCTCTTTCTACGAGTGTTAAC-TTCT 281
Query 164 GGGGATGGAGGTATCCACACAACAAGTTCAACTCTTGGGCTAGAAAAATGTCAGCTTTAC 223
|||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 280 GGGGTTGGAGGTATCCACACAAAAAGTTCAACTCTTGGGCTAGCAAAATGGCTGCTTTAC 221
Query 224 ACGAACCCATTTGGAGAAAAGCTGGGATTTTTGAAGCAATTTTAGCATCCA 274
|| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 220 ACAAACCCATTTGGAGAAAAGCTGGGATTTTTGAAGCAATTTTATCATCCA 170
Score = 219 bits (118), Expect = 1e-55
Identities = 154/171 (90%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 380 TTGAAGATGTTATGGTGCTTTTAGGTTTCTCTGTTTTGGGTTCACCTGTTTTTGCTACTC 439
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 169 TTGAAGACGTTATGGTGCTTTTAGGTTTCTCTGTTTTGGGTTCACCGGTTTTTGCTACTC 110
Query 440 TGGATAGCTCAGGAAAGGAG-AT-AATGGCGAAACTGGGGAAAGAATGGCTGAAGATTAA 497
|||||||||||||| || | || || || ||| |||| |||||||||||||||||||||
Sbjct 109 TGGATAGCTCAGGAGAG-ATTATCAA-GGAGAAGCTGGAGAAAGAATGGCTGAAGATTAA 52
Query 498 GAAAGATAAAGGAACATTTGTAACCCAAATAGCATGGATAGAGAGATTCAT 548
||||||||||| | |||||||||||| |||||||||| |||||||||||
Sbjct 51 GAAAGATAAAGTCAGTTTTGTAACCCAAGTAGCATGGATGGAGAGATTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91911761185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5