BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50820.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914950 jgi|Araly1|914950|Al_scaffold_0001_5204 398 8e-110
Ahg923530 jgi|Araly1|923530|scaffold_104811.1 346 3e-94
Ahg924345 jgi|Araly1|924345|scaffold_105626.1 307 1e-82
Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242 176 4e-43
> Ahg914950 jgi|Araly1|914950|Al_scaffold_0001_5204
Length=606
Score = 398 bits (215), Expect = 8e-110
Identities = 404/493 (82%), Gaps = 22/493 (4%)
Strand=Plus/Plus
Query 795 GGTTCAAGTTTGGGCATGGGAGAGATTCAGGGAACTACAACTAAAACCTTTTTCGTTGCT 854
||||||||||||| ||||||| ||||| ||||||||||||| ||||||| | ||||||
Sbjct 3 GGTTCAAGTTTGGACATGGGAAAGATTTAGGGAACTACAACCAAAACCTAATAAGTTGCT 62
Query 855 A-AGGGGTGAGCCAAGATTGGCTCGGTGGTG-TGACATGAAACAG-AGTACCAGCAATGC 911
| | ||| |||||||||||| | ||| | |||| |||||||| | ||||| |||
Sbjct 63 ACA-AGGTCAGCCAAGATTGGGGCTTTGG-GATGACTTGAAACAGCA-AACCAGGGATG- 118
Query 912 TTGGAG--GATTTT-CAACAACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAA 968
|| || |||||| || ||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 119 -TGAAGCAGATTTTGGAA-AACTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACAC-AA 175
Query 969 -AACTGTGAAAAACTGGGATTTTCCTCGA-TTTTATCCTGAGAGAGCAATGCGGGTGCCT 1026
|||||||| ||||||| | |||||| | ||||| || |||| ||| ||| | || ||
Sbjct 176 GAACTGTGACAAACTGGAAGTTTCCT-AAGTTTTACCCCGAGAAAGCGATGTGTGTTACT 234
Query 1027 GTTGGTCCCAACCTTGATGATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAG 1086
||| |||| | |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 235 GTTTGTCCGAGTCTTGATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAG 294
Query 1087 CTTGTTGGTATTGACAGTGTGGAGCATTACTTTCCC-AATCGAGTGGCTTCACAGTTTGG 1145
|||||||| ||| | | |||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 295 CTTGTTGGCATTAAGAAAGTGGAGCATTAC-TTCCCAAATAGAGTGGCTACACAGTTTGG 353
Query 1146 GATGCGTCAAGATGTTCATTGTCC-TGTTAACCA-GAAAAAACTCTCACGTGATGCAGCT 1203
|||| ||| ||| ||| || || |||| | || ||| || |||||||| || ||||||
Sbjct 354 AATGCTTCAGGATATTCCTT-CCCTTGTTGA-CAGGAACAACCTCTCACGGGAGGCAGCT 411
Query 1204 TGGAATGATTACGACAAGCCTATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCA 1263
|||||||||||| | ||||||||| ||| |||| || || ||||||||||||||||||||
Sbjct 412 TGGAATGATTACAATAAGCCTATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTGCA 471
Query 1264 ATATCTTGTGTTA 1276
|||||||||||||
Sbjct 472 ATATCTTGTGTTA 484
> Ahg923530 jgi|Araly1|923530|scaffold_104811.1
Length=1099
Score = 346 bits (187), Expect = 3e-94
Identities = 303/358 (85%), Gaps = 12/358 (3%)
Strand=Plus/Plus
Query 926 ACAACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAAAACTGTGAAAAACTGGG 985
||| ||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 10 ACAGCTCGAAAATGGACAGTTTTGAGTGGCGTCCCTACACAAAAACTGTGAAAAACTGGG 69
Query 986 -ATTTTCCTCGA-TTTTATCCTGA-GAGAGCA-ATGCGGGTGCCTGTTGGTCCCAACCTT 1041
||||| ||| | ||||| || || || || | ||| | || || ||| |||| | |||
Sbjct 70 AATTTT-CTC-AGTTTTACCCGGAGGA-AG-ATATGTGTGTTCCAGTTTGTCCGAGTCTT 125
Query 1042 GATGATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAGCTTGTTGGTATTGAC 1101
||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| |
Sbjct 126 GATGAAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTGGCATTAAA 185
Query 1102 AGTGTGGAGCATTACTTTCCCAA-TCGAGTGGCTTCACAGTTTGGGATGCGTCAAGATGT 1160
| |||||||||||||| ||||| | |||||||| |||||||||| |||| ||| |||||
Sbjct 186 AAAGTGGAGCATTACTT-CCCAAATAGAGTGGCTACACAGTTTGGAATGCTTCAGGATGT 244
Query 1161 TCATTGTCCTGTTAACCAGAAAAAAC-TCTCACGTGATGCAGCTTGGAATGATTACGACA 1219
|| || ||||||| || || || ||| ||||||| || ||||||||||||||||| || |
Sbjct 245 TCCTTCTCCTGTTGAC-AGGAACAACCTCTCACGGGAGGCAGCTTGGAATGATTATGATA 303
Query 1220 AGCCTATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCAATATCTTGTGTTAC 1277
|||||||||||| ||||||| || ||||| ||||||||||||||||| || |||||||
Sbjct 304 AGCCTATTGATGATTTGACATTACACATTTCTTCCCGTTCTGCAATACCTCGTGTTAC 361
> Ahg924345 jgi|Araly1|924345|scaffold_105626.1
Length=410
Score = 307 bits (166), Expect = 1e-82
Identities = 291/352 (83%), Gaps = 6/352 (2%)
Strand=Plus/Plus
Query 928 AACTCCAAAATGGATAGTTTTGAGTGGCGCCCCTACACTAA-AACTGTGAAAAACTGGGA 986
||||| |||||| | |||||||||||||| |||||||| || |||||||| ||||||| |
Sbjct 18 AACTCGAAAATGAACAGTTTTGAGTGGCGTCCCTACAC-AAGAACTGTGACAAACTGGAA 76
Query 987 TTTTCCTCGA-TTTTATCCTGAGAGAGCAATGCGGGTGCCTGTTGGTCCCAACCTTGATG 1045
|||||| | ||||| || |||| || ||| | || ||||| ||| | |||||||
Sbjct 77 GTTTCCT-AAGTTTTACCCCGAGAAAGTGATGTGTGTTACTGTTTTTCCGAGTCTTGATG 135
Query 1046 ATGAATTTATCTCCTTTGCTCGATGCATCAAGGTGTCTGAGCTTGTTGGTATTGACAGTG 1105
| ||||||||||||||||||||||||||||| || |||||||||||||| ||| | | |
Sbjct 136 AAGAATTTATCTCCTTTGCTCGATGCATCAAAGTTTCTGAGCTTGTTGGCATTAAGAAAG 195
Query 1106 TGGAGCATTACTTTCCCAA-TCGAGTGGCTTCACAGTTTGGGATGCGTCAAGATGTTCAT 1164
|||||| |||||| ||||| | |||||||| |||||||||| |||| ||| ||| ||| |
Sbjct 196 TGGAGCGTTACTT-CCCAAATAGAGTGGCTACACAGTTTGGAATGCTTCAGGATATTCCT 254
Query 1165 TGTCCTGTTAACCAGAAAAAACTCTCACGTGATGCAGCTTGGAATGATTACGACAAGCCT 1224
| | ||||| || |||| || |||||||| || |||||||||||||||||| | ||||||
Sbjct 255 TCTTCTGTTGACAAGAACAACCTCTCACGGGAGGCAGCTTGGAATGATTACAATAAGCCT 314
Query 1225 ATTGATGGTTTGACAATATACATTCCTTCCCGTTCTGCAATATCTTGTGTTA 1276
||| ||| |||| || || ||||||||||||||||| |||||||| ||||||
Sbjct 315 ATTAATGATTTGGCATTAAACATTCCTTCCCGTTCTACAATATCTCGTGTTA 366
> Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242
Length=339
Score = 176 bits (95), Expect = 4e-43
Identities = 131/148 (89%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 103 TCAGCTCTTTCTGTTCACTT-AAAGGCTCTTTCTACGAGTATTAAATTCTGGGGTTGGAG 161
||||||| |||| | |||| || ||||||||||||||| |||| ||||||||||||||
Sbjct 329 TCAGCTCCTTCTCCTGACTTGGAA-GCTCTTTCTACGAGTGTTAACTTCTGGGGTTGGAG 271
Query 162 GTTTCCAAACAAAAAGTTCAAGTCTTGGGCTAGAAAAATGGCAT-CTTTGCACGAACCCA 220
|| |||| ||||||||||||| ||||||||||| |||||||| | |||| ||| ||||||
Sbjct 270 GTATCCACACAAAAAGTTCAACTCTTGGGCTAGCAAAATGGC-TGCTTTACACAAACCCA 212
Query 221 TTTGGAGAAAAGCTGGGATTTTTGAAGC 248
||||||||||||||||||||||||||||
Sbjct 211 TTTGGAGAAAAGCTGGGATTTTTGAAGC 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5