BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50830.1
Length=2672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326260 jgi|Araly1|326260|fgenesh1_pm.C_scaffold_6001480 826 0.0
Ahg337228 jgi|Araly1|337228|fgenesh1_pg.C_scaffold_1003793 699 0.0
Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242 67.6 5e-10
> Ahg326260 jgi|Araly1|326260|fgenesh1_pm.C_scaffold_6001480
Length=1665
Score = 826 bits (447), Expect = 0.0
Identities = 814/987 (82%), Gaps = 42/987 (4%)
Strand=Plus/Plus
Query 650 GCGTGTGAGCCAAAAATCATGGGTTTCGACCTTCTTGGGTAGAGGTGGGGACATGGAGCA 709
||| |||||||||| ||||||| ||||| ||| ||||||||||||| | ||||||||
Sbjct 60 GCGAGTGAGCCAAAGATCATGGACTTCGAGTTTCATGGGTAGAGGTGGTCAGATGGAGCA 119
Query 710 TGTAGCGTTTCTGGTATTGTGGCTTTCGCTTTTCGTATTTCCAGTTAAAT-CTCGTCG-T 767
|| ||| ||||| |||||||||||||||||||| || ||||||| | | | || |||| |
Sbjct 120 TGAAGCTTTTCTTGTATTGTGGCTTTCGCTTTTTGTTTTTCCAGGTGACTGCT-GTCGTT 178
Query 768 -AATATCTCGAATCATGTTTTCCCAATAGCTGTTCGTTTAGCTAGAGGGGAAAGGATAGC 826
|||||| ||| |||| |||| || ||||||||||||||||| || |||||||| ||
Sbjct 179 CTATATCTAGAA--ATGTAATCCCTATCGCTGTTCGTTTAGCTAGCGGTGAAAGGATTGC 236
Query 827 TCTTGCCCCTGCTATTCTCGCAATCCTCTACAGAGATTTGGATCGAATCCATGAGGTATC 886
|||||| ||| || |||||||| |||| |||| |||||||| |||||| | | |
Sbjct 237 TCTTGCGCCTACTGTTCTCGCATTCCTATACAAAGATTTGGGTCGAAT-C-----G---C 287
Query 887 TAGA-GAAGATTGTGTTGACAAA-TTCCA-TCTGGAA-TCTTTGTTTAAGTTAGTACAAG 942
|||| ||| | |||| || ||| || | | | ||| ||||||||||||||||||||||
Sbjct 288 TAGAGGAA-AATGTGCTGGGAAAGTT--AGT-TTGAAGTCTTTGTTTAAGTTAGTACAAG 343
Query 943 TTTGGACATGGGAAAGATTCAGGAACATAAGACCAAAAGCC-AGTGACATTCCCAAAGGT 1001
||||||||||||| |||||||||||||| |||||||| || | || || ||| ||||
Sbjct 344 TTTGGACATGGGAGAGATTCAGGAACATCGGACCAAAA-CCTAAAGATATACCCGTAGGT 402
Query 1002 GAACCTAGAATAGCTCAGTGGCATGGTTTGCAT-CGAAGATCTAAGGATGCGTGGTTCTG 1060
||||| ||||||||||||||| | || | ||| | |||||||||| ||| | | || |
Sbjct 403 GAACCAAGAATAGCTCAGTGGGACAGTCT-CATACAAAGATCTAAGAATGTGAGATTGTA 461
Query 1061 TTTTGATGATTTTGAGTGGCGTCCTTATACTAAAGCATTGAACAATTGGAACCCATTTCG 1120
||||||||||||||| ||||||||||| |||||| | ||||| || ||||||||| ||||
Sbjct 462 TTTTGATGATTTTGACTGGCGTCCTTACACTAAACCGTTGAAGAACTGGAACCCACTTCG 521
Query 1121 GTTTTACCTTGAGGAAGCTATTTGGGTGACTGTTGATGA-AAGTATTGATGATGAGTTTG 1179
||||||| |||| |||||||| ||||||||||||||||| || | |||||||||| ||||
Sbjct 522 GTTTTACGTTGAAGAAGCTATGTGGGTGACTGTTGATGACAA-TGTTGATGATGAATTTG 580
Query 1180 CTTCTTTTGCTCGGTGTGTGACAGTTTC-TCAGATTGTTGGAGATGGTTTTGTAGAGGAT 1238
||||||||||||| ||||||| |||||| | | ||| |||| | ||||||||||||| |
Sbjct 581 CTTCTTTTGCTCGATGTGTGAAAGTTTCAT-ACCTTGCTGGAAAAGGTTTTGTAGAGGCT 639
Query 1239 TACTTCCCAAATAGAGTGGCGAGACAGTTCGGTTTGGATCAAGATCTTCCTGGTTTGGCT 1298
|||||||| || |||||||||| ||||| ||||||| |||||||||||||||||||| |
Sbjct 640 TACTTCCCGCATCGAGTGGCGAGGCAGTTTGGTTTGGCTCAAGATCTTCCTGGTTTGGTT 699
Query 1299 ACTTGTCAAAGAAACTCCACAGAAAAGGAAGCTTGGAATGATTACAATAAGTCTCTT-AT 1357
||| ||| ||||| | |||||||||||| |||||| ||||||||| ||||||| || ||
Sbjct 700 ACTCGTCGTAGAAAATTCACAGAAAAGGAGGCTTGGGATGATTACAGTAAGTCTGTTGAT 759
Query 1358 TGGTTTAAACCTCTACATGCCTTCTCGCCTCGATCAAGGTTCTGTCACTGCGAGATACCG 1417
||| |||| |||||||||||||| || || |||| ||||||||| || || |||||||
Sbjct 760 -GGTCTAAAGCTCTACATGCCTTCACGACTTGATCGAGGTTCTGTGACAGCCAGATACCA 818
Query 1418 AGTCTGGTGGCTGAAATCAGTTTCAAAGTTTCT-GAGTCCTGAAGAGATGAAGGAAGAAT 1476
|| ||||||| |||||||||||||| | ||||| | || ||||||||||| || ||||||
Sbjct 819 AGACTGGTGGTTGAAATCAGTTTCAGACTTTCTTG-GTTCTGAAGAGATGCAGAAAGAAT 877
Query 1477 CAACTGAAACTTTTAACGCAAGGAAGACATTTGATCAT-TATGACGAAGAT--T-ATGAT 1532
| |||||| ||| | | |||||||| |||||||||||| | || ||||| | |||||
Sbjct 878 CGACTGAAGCTTCTGATGCAAGGAATACATTTGATCATCT-TGGTAAAGATGGTGATGAT 936
Query 1533 GATGATATTGATGCATCTCCCAAGGTACTGCCTTTGAGTCAGGT-GTTTCAGAAATTGGA 1591
| ||||||| ||| ||||||||||||||| ||||||||||| || ||| ||||| |||||
Sbjct 937 GGTGATATTCATGTATCTCCCAAGGTACTTCCTTTGAGTCAAGTAGTT-CAGAAGTTGGA 995
Query 1592 AGAAGGTTTTCCCGCAAAACGCAGAAG 1618
| |||| ||||| ||||||||||||||
Sbjct 996 AAAAGGATTTCCTGCAAAACGCAGAAG 1022
> Ahg337228 jgi|Araly1|337228|fgenesh1_pg.C_scaffold_1003793
Length=1473
Score = 699 bits (378), Expect = 0.0
Identities = 536/611 (88%), Gaps = 15/611 (2%)
Strand=Plus/Plus
Query 1098 TTGAACAATTGGAACCCAT-TTCGGTTTTACCTTGAGGAAGCTATTTGGGTGACTGTTGA 1156
||||| |||||||| || | |||||||||| |||| |||||||| ||||||||||||||
Sbjct 556 TTGAAGAATTGGAAACC-TCTTCGGTTTTATGTTGAAGAAGCTATGTGGGTGACTGTTGA 614
Query 1157 TGAAAGTATTGATGATGAGTTTGCTTCTTTTGCTCGGTGTGTGACAGTTTCTCAGATTGT 1216
||| |||||||||||||||||||||| |||||| | ||||||| |||||||||| |||
Sbjct 615 TGAGAGTATTGATGATGAGTTTGCTTATTTTGCAAGATGTGTGAGAGTTTCTCAGCTTGC 674
Query 1217 TGGAGATGGTTTTGTAGAGGATTACTTCCCAAATAGAGTGGCGA-GACAGTTCGGTTTGG 1275
|||| ||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||
Sbjct 675 TGGAAATGGTTTTGTAAAGGATTACTTCCCGAATAGAGTGGCGATG-CAGTTTGGTTTGG 733
Query 1276 ATCAAGATCTTCCTGGTTTGGCTACTTGTCAAAGAAACTCCACAGAAAAGGAAGCTTGGA 1335
|||||||||||||||||||| |||| |||| |||| || |||||||||||| ||||||
Sbjct 734 CTCAAGATCTTCCTGGTTTGGTTACTCGTCATAGAATCTTCACAGAAAAGGAGGCTTGGG 793
Query 1336 ATGATTACAATAAGTCTCTT-ATTGGTTTAAACCTCTACATGCCTTCTCGCCTCGATCAA 1394
|| |||| ||||||| || | ||||||||| |||||||||||||||||||| |||| |
Sbjct 794 GCGAGTACAGTAAGTCTTTTGA-TGGTTTAAAGCTCTACATGCCTTCTCGCCTTGATCGA 852
Query 1395 GGTTCTGTCACTGCGAGATACCGAGTCTGGTGGCTGAAATCAGTTTCAAAGTTTC-TGAG 1453
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 853 GGTTCTGTCACTTCGAGATACCGAGTCTGGTGGCGGAAATCAGTTTCAAAGTTTCTTG-G 911
Query 1454 TCCTGAAGAGATGAAGGAAGAATCAACTGAAACTTTTAACGCAAGGAAGACATTTGATCA 1513
| ||| ||||||| | |||||||||||||||||||||| |||||||||| | |||| ||
Sbjct 912 TTCTGCAGAGATGCATAAAGAATCAACTGAAACTTTTAATGCAAGGAAGAAAGTTGAACA 971
Query 1514 TTATGACGAAGATTATGATGATGATATTGATGCATCTCCCAAGGTACTGCCTTTGAGTCA 1573
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 972 TTATGACGAAG---ATGTTGATGATATTGATACATCTCCCAAGGTACTGCCTTTGAGTCA 1028
Query 1574 GGTGTTTCAGAAATTGGAAGAAGG-TTTTCCCGCAAAACGCAGAAGGTCTGTGATACATA 1632
||| |||||| |||| ||||||| ||||| ||||||| |||||| |||||||| ||||
Sbjct 1029 TGTGGTTCAGAGATTGAAAGAAGGCTTTTCT-GCAAAACACAGAAGATCTGTGATGCATA 1087
Query 1633 GATTGGTAAAGCAAGATAAGATAGGTGGGTGTG-TGAACAGTCGTGTATCATCAGGTTGG 1691
||| ||||||||||||||||| ||||||| || |||||||| ||||||| |||||||||
Sbjct 1088 GATCAGTAAAGCAAGATAAGATTGGTGGGT-TGGTGAACAGTAGTGTATCTTCAGGTTGG 1146
Query 1692 AAGATGAACAA 1702
|||||||||||
Sbjct 1147 AAGATGAACAA 1157
Score = 337 bits (182), Expect = 3e-91
Identities = 253/286 (88%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 2075 GAAGAAGAGTATGATCGATGATGAGCAGCAACATAATGGATCGACTATGAAAAGCATTGG 2134
||||||||||||||| |||||| | ||| || || ||||||| |||| ||||||||||
Sbjct 1164 GAAGAAGAGTATGATGGATGAT-A--AGCCACGCAACGGATCGATTATGCAAAGCATTGG 1220
Query 2135 AAGCAATGGGAG-CAAGAAAGCAGAGTTTTTGGTCCATAAAAATAGCGAAAAGCATAGAT 2193
|||||||||| | |||||||||||| | |||||||||| | || | |||||||||| ||
Sbjct 1221 AAGCAATGGG-GCCAAGAAAGCAGAATGTTTGGTCCATGAGGATGGAGAAAAGCATAAAT 1279
Query 2194 GCAATGAGAAAA-TGTGCAGTGAAGTTAA-AAAGCAAGAAGAAATTGATGAAAGGTTGAA 2251
||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| |||||
Sbjct 1280 GCAATGA-AAAATTGTGCAGTGAAGTTAAGAAAG-AAGAAGAAATTGATGAAAGATTGAA 1337
Query 2252 AGAGAGAAAGCTTGCAATAAAGGAGATGGAACTGAAGCTTGAGGCACATATGATTGAGAT 2311
| ||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||
Sbjct 1338 ACAGAGAAAGCTTGCAATAAAGGAGATGGAATTGAAGCTCGAGGCACGTATTATTGAGAT 1397
Query 2312 GGAGAAGACTTTGTCCATGATTAGAAAGTGGAAAATCAGAGGAAAC 2357
||||||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1398 GGAGAAGACTTTGGCCATGATTAGAAAATGGAAAACCAGAGGAAAC 1443
Score = 183 bits (99), Expect = 4e-45
Identities = 216/271 (80%), Gaps = 14/271 (5%)
Strand=Plus/Plus
Query 501 ACCATAAC-TTTAGAGGATGTAATGGTGCTTCTAGGGTTTTCCGTTTTGGGCTCTCCGGT 559
|||||||| || |||||||||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 118 ACCATAACGCTT-GAGGATGTAATGGTTCTTCTTGGGTTTTCTGTTTTGGGTTCTCCTGT 176
Query 560 CTTTGCCCCTTTAGAAACCTCGGAGACGAGAGATTCGGTAAAGAAACTGGAGAATGTAAG 619
||| |||||||| ||| ||| |||| ||||||| | || ||||| ||||||| | |||
Sbjct 177 TTTTACCCCTTTAAAAAGCTCAGAGATGAGAGATGCCGTGGAGAAATTGGAGAAAGAAAG 236
Query 620 AATCCAGCATATGAATAGCAGCACAGACAGG--CGTGTG-AGCCAAAAATCATGGGTTTC 676
| | || ||| | || |||| | ||| || | | || || ||| | ||||| | ||
Sbjct 237 ATTTGAGAATA-G-AT-GCAG--C-GAC-GGTAC-TTTGAAG-GAAACACCATGGATCTC 287
Query 677 GACCTTCTTGGGTAGAGGTGGGGACATGGAGCATGTAGCGTTTCTGGTATTGTGGCTTTC 736
|| ||| |||||||||||||| | |||||||| | ||||||||||||||||||||||||
Sbjct 288 GAGCTTTTTGGGTAGAGGTGGTCAGATGGAGCACGAAGCGTTTCTGGTATTGTGGCTTTC 347
Query 737 GCTTTTCGTATTTCCAGTTAAATCTCGTCGT 767
|||||| || ||||| | || ||||||||||
Sbjct 348 GCTTTTTGTTTTTCCTGCTACATCTCGTCGT 378
> Ahg314462 jgi|Araly1|314462|fgenesh1_pm.C_scaffold_1003242
Length=339
Score = 67.6 bits (36), Expect = 5e-10
Identities = 59/70 (84%), Gaps = 2/70 (3%)
Strand=Plus/Minus
Query 327 TCTT-GGCTTGCAAAAATGGAAGCTTTACACGCACAAACATGGAGAAAAGCTGGGATTTT 385
|||| |||| || ||||||| ||||||||| || | ||||||||||||||||||||
Sbjct 248 TCTTGGGCTAGC-AAAATGGCTGCTTTACACAAACCCATTTGGAGAAAAGCTGGGATTTT 190
Query 386 TGAAGCAATT 395
||||||||||
Sbjct 189 TGAAGCAATT 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100786788270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5