BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50840.1
Length=3569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1 5437 0.0
Ahg929992 jgi|Araly1|929992|scaffold_302449.1 2047 0.0
Ahg930696 jgi|Araly1|930696|scaffold_303153.1 340 3e-92
> Ahg474208 jgi|Araly1|474208|fgenesh2_kg.1__4162__AT1G50840.1
Length=3499
Score = 5437 bits (2944), Expect = 0.0
Identities = 3347/3536 (95%), Gaps = 50/3536 (1%)
Strand=Plus/Plus
Query 19 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACTAGCTCGGAA 78
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTTCTTCTGCTTAAGCTTTCCTTCTCAGGCAGACCCACTTGCTTGAAACAAGCTCGGTG 60
Query 79 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTCGTCACT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 CGATAACGACAAAATTCGCCACCATAAACCCTATTTTTAATCTCCGACTCTGTGGACACT 120
Query 139 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCCTTCAAGCTGGGTAGATTAAGTTCGCTTATGGCCATGGGGGTTTCTCTTACTTCCC 180
Query 199 ACAATAACcctcttcttcgccacttatctccttcctcttcctgggtttctcgttcctcct 258
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 ACAATAACCCTCTTCTTCGCCACTTATCTCCTTCCTCTTCTTGGGTTTCTCGTTCCTCCT 240
Query 259 ctcgcctctcttcttctccactcccttccttcctctttccttgccgtcgaacccttcttc 318
||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 241 CTCGCTTCTCTTCTTCTCCACTCCCTTCCTTTCTCTTTCCTTGCCGTAGAACCCTTCTTC 300
Query 319 AAAGGAAACTAGCTTCCACTGATGGAAATGTCGGTTATT-GTACTACTACAGTTTGTCAG 377
|||||||| || ||||||| || |||||||||||||||| | ||||||||||||||||||
Sbjct 301 AAAGGAAATTATCTTCCACAGAGGGAAATGTCGGTTATTCG-ACTACTACAGTTTGTCAG 359
Query 378 GGATTTCAGCATTCGGTTCATCAACGGTCGTCTTCTGTTGTGTTTAACGGAGAGTGGGAA 437
|||||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 360 GGATTTCAGCATCCGGGTCATCAACGGTCATCTTCTGTTGTGCTTAACGGAGAGTGGGAA 419
Query 438 CTTCGATCGGAATCTAACAAGGTAAGGATGGTTCCTAAGATTATCAAGGTTGG-AAATCA 496
|||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 420 CTTCGATCCGAATCCAACAAGGTAAGGATGGTTCCTAAGATAATCAAGG-TGGCAAATCA 478
Query 497 GACGGAGGTAGCCGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 556
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GACGGAAGTTGCTGAAACTCATCAAGTTCCTGGAACTGTAAGTGCTTGGAGGGAAGAAGC 538
Query 557 TAATAAGCTTAGAGAAAGAAATGGTCAAATTGCTAGAAACCTTGATGACAATGGTTATTT 616
|||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||
Sbjct 539 AAATAAGCTTAGAGAAAGAAATGGTCAGATTGCTAGAAACCTCGATGACAGTGGATATTT 598
Query 617 CAATGGCTCTGTCCCAATTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 676
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAATGGCTCTGTCCCAGTTATATCTAGTGCTCCGTCTTATGAAACCTCTCAGAAGATTGA 658
Query 677 TTATGAGTTCAAGCCCAGAGGGACCACTAGGTCCACTACTGCTACACTCAATAAGGAATT 736
|||||||||||| |||||| || || |||||||| ||||||||||||||||||
Sbjct 659 TTATGAGTTCAAACCCAGA-GG-----TA---ACACTACTGTTACACTCAATAAGGAATT 709
Query 737 GATTGGCATTACCCAATCTGAACCTGTTGTGTCATTGCCAAGGAAGGGTTTAGATGTTGG 796
||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 710 GATTGGCGTTACCCAATCTGAACCTGTTGTGTCATTGCCAAGCAAGAGTTTAGATGTTGG 769
Query 797 GGATAATATGGATGTAAATCCTAAAGGAGAGGGAATACAGAGACCTCTTATAAGCGATAA 856
|||||||||||||||||||||| ||||| | || || ||||||||||||||||| ||
Sbjct 770 AGATAATATGGATGTAAATCCTAGTGGAGAAGCAAAACGGAGACCTCTTATAAGCGGGAA 829
Query 857 GTCTTCTGGTACCGCAAATGGAAACAAGAATACTGTTGCCATTTCCAAAGTGGAGAGAAG 916
|||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||
Sbjct 830 GTCTTCTGGTACCGCAAACGGCAACAAGAATACAGTTGCCATTTCCAAAGTGGAGAAAAG 889
Query 917 CACTGAACCTTCGAATGTCCGTGAAAACCTTGGGAAAATATATGACAAGGTTCTCATTGT 976
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 890 CACTGAACCTTCCAATGTCCGTGAAAACCTTAGGAAAATATATGACAAGGTTCTCGTTGT 949
Query 977 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCGTGAATCAGTTTAGGAATCA 1036
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 950 TGATAATGTGCAAGCTGCGAAGGATACCGTGGCTAAGCTCATGAATCAGTATAGGAATCA 1009
Query 1037 TGTCCATTCCTGTGATACAGAGGTGTCCGGGATTGAGGTTAAGGAAGAAACGCCTGTCGA 1096
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1010 TGTCCATTCTTGTGATACAGAGGTGTCCGGGATTGAGGTGAAGGAAGAAACGCCTGTCGA 1069
Query 1097 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGAATGG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1070 CCACGGTGAATTAATATGTTTCAGTATTTACTGTGGGCCAGAAGCAGATTTTGGGTATGG 1129
Query 1157 AAAATCGTGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1216
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AAAATCATGCATCTGGGTTGATGTTCTTGGTGAAAATGGCAGGGAGGTGTTGGCCGAGTT 1189
Query 1217 TAAACCATATTTTGAAGACTCGTTCATCAGAAAAGTCTGGCACAACTACAGTTTCGATAG 1276
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1190 TAAACCGTATTTTGAAGACTCGTTCATCAAAAAAGTCTGGCACAACTACAGTTTCGATAG 1249
Query 1277 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CCACATCATTAGGAACCATGGAATTGAGATTTCTGGTTTTCATGCCGACACTATGCACAT 1309
Query 1337 GGCACGATTATGGGATTCTGCACGGCGGATAAAAGGTGGTTATTCGCTTGAAGCGCTTAC 1396
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 1310 GGCACGATTATGGGATTCTGCACGACGGATAGAGGGTGGTTATTCGCTTGAAGCGCTTAC 1369
Query 1397 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAA 1456
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 AAGTGACCCAAAAGTTCTTGGGGGCACACAGACAAAGGAGGAAGCTGATTTCCTTGGTAA 1429
Query 1457 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 AATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGATGGATCTGAAGGGAA 1489
Query 1517 AATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1576
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AATGGTTGTCATTCCCCCTGTCGAAGAGCTTCAGCGAGAAGATCGAGAGGCTTGGATTTC 1549
Query 1577 ATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1636
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 ATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAGCATGACAAAGAAACT 1609
Query 1637 GCAATTGATGGATTGGCATCTTGATGGAAAGCCAGTTTTAGGAAGGACAATGTTGGATTT 1696
|||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1610 GCAACTGATGGATTGGCGTCTTGATGGAAAGCCAGTTTTAGAAAGGACAATGTTGGATTT 1669
Query 1697 TTACCATGAGTTCTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1756
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TTACCATGAGTTTTGGCGACCCTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGAT 1729
Query 1757 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCGGAACAACAAGT 1816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1730 ACTTGTAGATAGAGAGTATCTTGCTGAGATAGAGAAAGTAGCCAAAGCCGAACAACAAGT 1789
Query 1817 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAA 1876
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1790 TGCTGGTAGTAGGTTTCGTAATTGGGCATCTAAGTATTGCCCTGATGCAAAGTATATGAG 1849
Query 1877 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTC--A- 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1850 TATTGGCAGTGACACACAATTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACAGTGTGAA 1909
Query 1934 TGACGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGA 1993
|| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1910 TGGCGAGGTGCTTCCAGTTGAAAAGCTCTTCAAAATTCCCAATATTGATAAGGTTATTGA 1969
Query 1994 AGAAGGCaaaaaaaCACCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAG 2053
|| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1970 AGTAGGCAAAAAAACAGCGACGAAGTTTCGAAACATCAAACTGCATAGGATAACTGACAG 2029
Query 2054 CCCACTGTCAACGGAAAATTTTACTGCCAGTGGTTGGCCCTCTGTAGGTGGGGATGTTTT 2113
|||||||||||| |||||||| ||||||||||||||||| ||| || |||||||||||||
Sbjct 2030 CCCACTGTCAACTGAAAATTTAACTGCCAGTGGTTGGCCGTCTATAAGTGGGGATGTTTT 2089
Query 2114 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATAT 2173
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2090 GAAAGAGTTAGCTGGGAAAGTTTCTGCTGAATACGACTTTATGGAAGATGTCTCAGATAT 2149
Query 2174 TTCTCTGGAAGAAGTTGTTGAGGATGATGATGTAGA--AA-CATCAGAAACACAAAAGTC 2230
||||||||||||||||| |||||||||||||| ||| || | ||| |||||||||||||
Sbjct 2150 TTCTCTGGAAGAAGTTGCTGAGGATGATGATGCAGATCAAACTTCAAAAACACAAAAGTC 2209
Query 2231 CAAGACAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGG 2290
||||||||||| | ||||||||||||| |||||||||| |||||||||||| || |||||
Sbjct 2210 CAAGACAGATGTTCAAACCGACACATCCGCTTATGGAATAGCATATGTTGCCTTCGGAGG 2269
Query 2291 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCTCATTATGTGAAGTTTGCTCTAT 2350
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2270 GGGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCGTCATTATGTGAAGTTTGCTCAAT 2329
Query 2351 AGACT-CTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAG 2409
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2330 AGA-TGCTTTGATCTCAAATTTTATTCTTCCCTTACAGGGAAGTAATGTATCAGGCAAAG 2388
Query 2410 ATGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2469
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2389 ATGGTCGCGTCCATTGCTCCCTGAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAA 2448
Query 2470 GGCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2529
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2449 GGCCAAATTTGCAGAACCAACCTGCTTTGGAGAAGGATCGGTACAAGATTCGTAAGGCCT 2508
Query 2530 TTGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAA 2589
||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2509 TTGTAGCGTCACCTGGAAATACACTCGTTGTGGCTGATTATGGGCAGTTGGAACTCAGAA 2568
Query 2590 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGATT 2649
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2569 TTCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTCAAAGCAGGCGGAGATT 2628
Query 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGGGC 2709
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2629 TCCACTCAAGGACAGCCATGAATATGTATCCACATATTCGTGAAGCTGTAGAAAATGGGC 2688
Query 2710 AAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTAA 2769
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2689 AAGTGATCCTCGAATGGCATCCACAACCTGGGGAAGACAAGCCACCCGTGCCGTTGTTAA 2748
Query 2770 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2749 AGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTATG 2808
Query 2830 GGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGAA 2888
||||||||||| |||||||||||||||||||||||||||| | | |||| ||||||||
Sbjct 2809 GGAAAACCGCGATCGGGCTTTCTAGAGATTGGAAGGTCTC-AGTTGAAGAGGCTCAGGAC 2867
Query 2889 ACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAAG 2948
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2868 ACAGTCAAACTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAAGGCGTAAG 2927
Query 2949 AAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCCG 3008
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2928 AAAGAAGCTATAGAAGATGGATATGTACGCACTTTACTAGGAAGGTCTCGTAGATTTCCG 2987
Query 3009 -GCGTCA-AAGTCACGTGCTCAGA-GAAATCATATCCAAAGAGCAGCAATCAACACTCCA 3065
| || | ||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 2988 AG-GT-ATAAGTCACGTGCGCAGAAGAA-TCATATCCAAAGAGCAGCAATCAACACTCCA 3044
Query 3066 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAA 3125
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3045 GTCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGACAAATCAA 3104
Query 3126 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGAA 3185
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3105 CAGTTGAAGAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTGATCTTGGAA 3164
Query 3186 GGACCAATTGAATCAGCGGAGATCGCAAAGGACATAGTTGTGGACTGTATGTCTAAGCCC 3245
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 3165 GGGCCAATTGAATCAGCGGAGATCGCCAAGGACATAGTTGTGGACTGTATGTCTAAACCC 3224
Query 3246 TTTAACGGAAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTCAAAAC 3305
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 3225 TTTAACGGAAGGAATATTCTCTCGGTCGATTTATCTGTTGATGCAAAATGTGCTCAGAAC 3284
Query 3306 TGGTATGCTGCCAAATAGAGAAGCTTAGAGACCGGCCGTAGTTGAAGGAAGCGATTTTTT 3365
||||||||||||||||||| | | || || | || | | | | | |||||||
Sbjct 3285 TGGTATGCTGCCAAATAGA-A-G-TT-GA-A--GG----A----A-G-A-G--ATTTTTT 3324
Query 3366 GGGTATATTAAGGTTTGGGTTTTGTAAATGTTAGAAAGCCTTGAGAACGTTGAGCTGTGT 3425
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3325 GGGTATATTAAGGTTTGGTTTTTGTAAATGTTAGAAAGCCTTGAGAACATTGAGCTGTGT 3384
Query 3426 AAATTGTTTTCTCAAACTCTAATCTTCTAACTTGACGATGTTTGAATGCAAAAGTGGTTA 3485
||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 3385 AAATTGTTTTCTCAA-CTCTAATCCTCTAACTTGACGATGTTTGAATGCAAATGTGGTTT 3443
Query 3486 AAGTAACTTGAGAACAATCATGATATGAATATTGTGGATTGCTTTGTGTAAAATGA 3541
||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 3444 AAGTAACTTAAGAACAATCATGATATTAATGTTGTGGATGGCTTTGTGTAAAATGA 3499
> Ahg929992 jgi|Araly1|929992|scaffold_302449.1
Length=3180
Score = 2047 bits (1108), Expect = 0.0
Identities = 2042/2486 (82%), Gaps = 91/2486 (4%)
Strand=Plus/Plus
Query 895 CCATTTCCAAAGTGGAGAGAA-GCACTGAACCT-TCGAATGTCCGTGAAAACCTTGGGAA 952
|||||||||| ||||| | || |||| ||||| ||||| ||||| | |||||| |||
Sbjct 710 CCATTTCCAATGTGGA-AAAATGCAC-CAACCTGTCGAAAGTCCGAGCAAACCTCAAGAA 767
Query 953 AATATATGACAAGGTTCTCATTGTTGATAATGTG-CAAGCTGCGAAGGATACCGTGGCTA 1011
||||||| | | |||||| |||||||||||||| | || ||| ||||| ||||||||||
Sbjct 768 AATATATAATAGGGTTCTTGTTGTTGATAATGTGTCTAG-TGCAAAGGAAACCGTGGCTA 826
Query 1012 AGCTCG-TGAATCAGTTTAGGAATCATGTCCATTCCTGTGATACAGAGGTGTCCGGGATT 1070
||| | ||||||| | |||||||| ||||||| | || ||||||||||||||| |||||
Sbjct 827 TGCT-GATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTGTCCAGGATT 885
Query 1071 GAGGTTAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATATGTTTCAGTATTTACT 1128
|| || || || ||||| ||||| ||||| || || | | |||||||||||||| || |
Sbjct 886 GATGTGAA-GACTGAAACACCTGTGGACCATGGGGAGA-TGATATGTTTCAGTATCTATT 943
Query 1129 GTGGGCCAGAAGCAGATTTTGGGA-ATGGAAAATCGTGCATCTGGGTTGATGTTCTTGGT 1187
|||| |||||||||||||| ||| | |||||||| || |||||||| ||||| |||||
Sbjct 944 GTGGATCAGAAGCAGATTTT-GGAGACGGAAAATCATGTATCTGGGTAGATGTGCTTGGC 1002
Query 1188 GAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCATATTTT-GAAGACTCGTTCATCAG 1246
|||||||| ||||| | ||||| |||||||| |||| |||| || ||||| | ||| |
Sbjct 1003 GAAAATGGAAGGGATATCTTGGCTGAGTTTAAGCCAT-TTTTCGAGGACTCATCCATAAA 1061
Query 1247 AAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGGAACCATGGAATTGAGA 1305
|||||| ||||| |||||||| ||| |||| ||||||||| || || ||||||| ||
Sbjct 1062 AAAAGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGAAATTATGGAATCAAGC 1120
Query 1306 TTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGGGATTC-TGC-ACGGCG 1363
||||||||||||||| || || ||||||||||||||||| |||||||| | | | | ||
Sbjct 1121 TTTCTGGTTTTCATGGTGATACGATGCACATGGCACGATTGTGGGATTCAT-CTA-GACG 1178
Query 1364 GATAAAAGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAAAAGTTCTTGGGGGCAC 1423
|||| ||||||||||| || ||||| |||||||||||||||| |||||||||||| ||
Sbjct 1179 GATATCGGGTGGTTATTCTCTCGAAGCACTTACAAGTGACCCAAGAGTTCTTGGGGGAAC 1238
Query 1424 ACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAA 1483
|||||||||||||||| || || |||||||||| || ||||||| ||||| || |
Sbjct 1239 TGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAAATTTTCGG-TA 1297
Query 1484 ACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAATCGTTG-TCATTCCCCCTGTTGAA 1541
| || ||| |||||||||||||||| |||||| |||| | || ||||||| |||||| ||
Sbjct 1298 AGGGAAAATTGAAAAAAGATGGATCAGAAGGG-AAATTGGTGATCATTCCTCCTGTTAAA 1356
Query 1542 GAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAG 1600
||||| | | | || |||||||| ||||||||||| ||||| || |||||| |||||||
Sbjct 1357 GAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCCTACTCGGCGTTGGATTCGATAAG 1415
Query 1601 CACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAATTGATGGATTGGCATCTTG 1659
||| ||||||||||| |||||||||| | ||| || ||||| || | | ||| |||||
Sbjct 1416 CACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAATTGCAAGCGAAGAAATGGTTTCTTG 1474
Query 1660 ATGGAAAGCCAGTTTTAGGA-AGGACAATGTTGGATTTTTACCATGAGT-TCTGGCGACC 1717
||||||| | | ||| | | || || ||||| ||||| ||||| || | | |||| |||
Sbjct 1475 ATGGAAATCTAATTTCAAAACAGAAC-ATGTTTGATTTCTACCAAGAATAT-TGGCAACC 1532
Query 1718 CTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTTGTAGATAGAGAGTATCT 1777
|||||||||||||||| ||||||||| | ||||| || ||||||||||| || ||| |
Sbjct 1533 TTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTAT-T 1591
Query 1778 T-GCTG-AGATAGAGAAAGTAGCCAAAGCGGAACAACAAGTTGCTGGTAGTAGGTTTCGT 1835
| || | |||| |||| ||||||||||| |||||| || |||||| | ||||| |||
Sbjct 1592 TGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTGCTGTTTCCAGGTTCCGT 1650
Query 1836 AATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAATATTGGCAGTGACACACAA 1895
| |||||| || ||| |||| || ||||||||| |||||||| ||||||||||| | |||
Sbjct 1651 AGTTGGGCTTCAAAGCATTGTCCAGATGCGAAGCATATGAATGTTGGCAGTGACTCGCAA 1710
Query 1896 TTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACA---GTCATGACGAGG-TGCTTCCAGT 1951
||||| || |||||||||||||||||||| |||| || |||| |||| | |||||| |
Sbjct 1711 TTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGTAATGATGAGGAT-CTTCCA-T 1768
Query 1952 -TGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGAAGAAGGCaaaaaa-aCA 2009
|||||| || |||||||| |||||| | |||||||| |||||| |||| |||||| | |
Sbjct 1769 ATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATTGAAAAAGG-AAAAAAGAGA 1827
Query 2010 -CCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAGCCCACTGTCAACGGA 2068
|| || ||||| || || ||||||||||||||||| || || || || || | || ||
Sbjct 1828 GCC-ACAAAGTTCCGGAATATCAAACTGCATAGGATTAGCGACAGGCCTTTGCCCACTGA 1886
Query 2069 AAATTTTACTGCCAGTGGTTGGCCCTCTG-TAGGTGGGGATGTTTTGAAAGAGTTAGCTG 2127
||| || |||||| || |||||||||| || |||| || ||||||| |||||||
Sbjct 1887 AAAGTTCACTGCCTCAGGCTGGCCCTCTGTTA-GTGGAGACACCTTGAAAGCCTTAGCTG 1945
Query 2128 GGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATATTTCTCTGGAAG--A 2185
||||||| ||||| | ||| |||| || || | || ||||||| || ||| |||| |
Sbjct 1946 GGAAAGTCTCTGCAGGATATGACTATACAGAGGGCGTTTCAGATACTTGTCTAGAAGAAA 2005
Query 2186 A-GTTGTTGAGGATGA-TG-A--T-G-T---AGA--AA-CATCAGAAACACAAAAGTCCA 2232
| ||| || ||||| || | | | | ||| || | |||||||||| | ||||
Sbjct 2006 ACATTGGAGATGATGATTGTATTTCGCTACCAGATGAAGTTTTAGAAACACAACACTCCA 2065
Query 2233 AGA-CAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGGG 2291
| | || || |||| | |||||||||||||||||||| |||| || ||| |||||||||
Sbjct 2066 ATACCA-CTGTTGAATCAGACACATCTGCTTATGGAACTGCATTTGATGCGTTTGGAGGG 2124
Query 2292 GGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCT-CATTATGTGAAGTTTGCTCTAT 2350
|||||||| ||||||||||| || |||||||||| || ||||||||||||||||||| ||
Sbjct 2125 GGTGAAAGTGGAAAGGAGGCCTGCCATGCTATTG-CTGCATTATGTGAAGTTTGCTCCAT 2183
Query 2351 AGACTCTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAGA 2410
|| || || || ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2184 TGATTCCTTAATATCAAATTTTATTCTTCCTTTACAGGGAAGTAATGTGTCAGGAAAAGA 2243
Query 2411 TGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAAG 2470
|||||| ||||| |||||||| ||||| || || ||||||||||||||||| ||||||||
Sbjct 2244 TGGTCGTGTCCACTGCTCCCTGAATATTAACACTGAAACTGGGCGCTTATCGGCTAGAAG 2303
Query 2471 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCTT 2530
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 2304 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGTACAAGATCCGTCAGGCCTT 2363
Query 2531 TGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAAT 2590
||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||||||| ||
Sbjct 2364 CATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATGGACAGCTGGAACTTAGGAT 2423
Query 2591 TCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGA-TT 2649
||||||||||||| || |||| |||||||||| ||||||||| | ||| || ||||| ||
Sbjct 2424 TCTGGCACATCTTGCTAGTTGCAAAAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTT 2483
Query 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGG-G 2708
|| ||||||| ||||| |||||||||||||||||| |||||||||| || |||||||| |
Sbjct 2484 TC-ACTCAAGAACAGCTATGAATATGTATCCACATATTCGTGAAGCAGTTGAAAATGGTG 2542
Query 2709 CAAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTA 2768
||||| ||||||||||||||||| ||||||| |||| |||||||| ||||| |||||
Sbjct 2543 -AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAGCCACCAGTGCCATTGTTG 2601
Query 2769 AAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTAT 2828
||||||||||||| ||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 2602 AAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTTAACTTCTCGATTGCGTAT 2661
Query 2829 GGGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGA 2887
||||| || || | ||||| ||||||||||||||||| || | || |||||||||| ||
Sbjct 2662 GGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCAA-TAGAAGAAGCTCAAGA 2720
Query 2888 AACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAA 2947
||||| |||||||||| |||||||| |||||||| |||||||||||||| | || ||
Sbjct 2721 TACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAAATGGCAAGAACTACGCAA 2780
Query 2948 GAAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCC 3007
|||||| |||||| || ||||||||||||||||||| | |||||| |||||| ||| ||
Sbjct 2781 GAAAGAGGCTATACAAAATGGGTATGTACTCACTTTGTTGGGAAGGGCTCGTAAATTCCC 2840
Query 3008 GGCGTCAAAGT-CACGTGCTCAGAGAAATCATATCCAAAGAGCAGCAATCAACACTCCAG 3066
| | | || ||||||| || | ||| |||||| || ||||||||||||||||||| |
Sbjct 2841 TGTAT-ACCGTTCACGTGCCCAAAAAAACCATATCGAACGAGCAGCAATCAACACTCCTG 2899
Query 3067 TCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAAC 3126
| ||||||||||| ||||||||||| ||||| || ||| |||| ||||| | ||||||||
Sbjct 2900 TTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCTGGAGATATCAAAAAATCAAC 2959
Query 3127 AGT-TGAA-GAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGA 3184
|| | || || ||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 2960 -GTCTAAAAGA-GCTTGGTTGGAAATTGCTTCTTCAAATTCATGATGAAGTAATCTTGGA 3017
Query 3185 AGGACCAATTGAATCAGCGGAGA-TCGC-AAAGGACATAGTTGTGGACTGTATGTCT-AA 3241
|||||||| ||| ||||||| || | || |||| ||||||||||| |||| |||||| ||
Sbjct 3018 AGGACCAAATGAGTCAGCGGCGAAT-GCTAAAG-ACATAGTTGTGAACTGCATGTCTGAA 3075
Query 3242 GCCCTTTAACGG-AAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTC 3300
||||| ||||| ||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 3076 -CCCTTCAACGGCAAG-AATATTCTCTCAGTGGACTTATCTGTTGATGCTAAGTGTGCTC 3133
Query 3301 AAAACTGGTATGCTGCCAAATA-GAG 3325
| ||||||||||||| ||||| |||
Sbjct 3134 AGAACTGGTATGCTGGAAAATAAGAG 3159
> Ahg930696 jgi|Araly1|930696|scaffold_303153.1
Length=227
Score = 340 bits (184), Expect = 3e-92
Identities = 194/199 (97%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1442 TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAAACGGAAACTGAAAAAAGA 1501
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2 TGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGTAAACGGAAACTGAAAAAAGA 61
Query 1502 TGGATCTGAAGGGAAAATCGTTGTCATTCCCCCTGTTGAAGAGCTTCAGCGAGAAGATCG 1561
|||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 62 TGGATCTGAAGGGAAAATGGTTGTCATTCCCTCTGTCGAAGAGCTTCAGCGAGAAGATCG 121
Query 1562 AGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG 1621
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AGAGGCTTGGATTTCATATTCTGCCTTGGATGCGATAAGCACACTAAAGCTTTACGAGAG 181
Query 1622 CATGACAAAGAAACTGCAA 1640
|||||||||||||||||||
Sbjct 182 CATGACAAAGAAACTGCAA 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134799923566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5