BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50870.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1 944 0.0
Ahg315031 jgi|Araly1|315031|fgenesh1_pm.C_scaffold_2000064 385 5e-106
> Ahg474209 jgi|Araly1|474209|fgenesh2_kg.1__4163__AT1G50870.1
Length=1137
Score = 944 bits (511), Expect = 0.0
Identities = 608/655 (93%), Gaps = 5/655 (1%)
Strand=Plus/Plus
Query 6 GCAACGAGAAGAAAACACCGAACGGATTCACAGAGAAAGACGAAAAAGACAATCTTCTTC 65
||||| |||||||||||||||||| || ||| || |||||||||||||||||||||||||
Sbjct 6 GCAACCAGAAGAAAACACCGAACGTATCCACCGAAAAAGACGAAAAAGACAATCTTCTTC 65
Query 66 GATACCAAAAACAACAACATTGCTCTGTCCTCTTGATCTAATCTTGGAGATACTCTTAAG 125
|| ||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 66 GACACCGAAAACAACAACATTGCTCTTTCCTCTCGATCTAATCTTAGAGATACTCTTAAG 125
Query 126 GCTACCTGTTAAATCTGTTTTGAGGTTTCGTTGTGTTTCGAAGCTCTGGTTATCAACCAC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 126 ACTACCTGTTAAATCTGTTTTGAGGTTTCGTTGTGTTTCGAAGCTCTGGTTATCAATCAC 185
Query 186 CACCGATCCATATTTTACCAACTCATACGAAGCTCGATCCTCAACACGGCCAAGTCTTCT 245
|||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 186 CACCGATCCATATTTTACCAACGCATACGGAGCTCGATCCTCAACACGACCAAGTCTTCT 245
Query 246 AATGTTCTTCAAAAACAAGGACAAGTTGTTTGTTTTCACGTTTCCTCACCACAATCAGAA 305
|||||||||||||| || || |||||||||||||| ||||||||| ||||||||||||||
Sbjct 246 AATGTTCTTCAAAAGCAGGGGCAAGTTGTTTGTTTACACGTTTCCGCACCACAATCAGAA 305
Query 306 TTCCAAGGAGACTCATTCTTATTCTCAGCATGTGGATAGTTACCATATCAAATACCCTAA 365
||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TTCGAACGAGCCTCATTCTTATTCTCAGCATGTGGATAGTTACCATATCAAATACCCTAA 365
Query 366 ATATTGTTGCTTCCCCTTCACGGAATCTGTCCACGGGTTAATCAGCTTTCGAATATCTAC 425
| | |||||||||| |||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 366 ACAATGTTGCTTCCGCTTCACGGAATCAGTCCACGGCTTGATCAGCTTTCGAATATCTAC 425
Query 426 AAAACCCATAATTTGGAACCCTACCATGAGACAGTTTTTAATCTTGCCTAAACCGGAAAA 485
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 AAAACCCATAATTTGGAACCCTACCATGAGACAGTTTTTAATCTTACCTAAACCGGAAAA 485
Query 486 AAGCTGGAAGGGATTATCAGTCTTTTTAGGATACGATCCAGTCGAAGGTAAACACAAACT 545
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 486 AAGCTGGAAGGGATTATCAGTCCTTTTAGGATACGATCCGGTCGAAGGTAAACACAAACT 545
Query 546 AATGTGCATGAA-TCGTGATAACACAAGCGATGAGTGTAGGGTTTTAACACTGGGATCAG 604
||||||||| | |||||||| |||| |||| ||||||||||||||||||||||||| ||
Sbjct 546 AATGTGCAT-ACCTCGTGATAGCACATGCGACGAGTGTAGGGTTTTAACACTGGGATTAG 604
Query 605 CTCAAGAAAAA-TGGAGAAGGATCAAAAGTAACCTTAAGCATCGTTCTATC-CTT 657
||||| || |||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 605 CTCAA-AAGTCGTGGAGAAGGATCAAAACTAACCATAAGCATCGTTCTATCTCTT 658
Score = 477 bits (258), Expect = 8e-134
Identities = 326/357 (91%), Gaps = 11/357 (3%)
Strand=Plus/Plus
Query 830 GGTTAGCATGTGTTAATAATACCATG--G-ACGATGTCAATGGTGGTATTACATTGTGGA 886
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 755 GGTTAGCATGTGTTAATAATACCATGAAGAACGATGTCAATGGTGGTATTACATTGTGGA 814
Query 887 CTTTGGAGGATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTGGCTC 946
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 815 CTTTGGAGAATGCAGAGAAACACATATGGTCATGTAAACTCTTTCTTGCTCCTTTTGCTC 874
Query 947 ATTATGATCGGAGTTTGAAAACTGATTTCAAACTAGATGGTATCACTCATGCTGGAGAGT 1006
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 875 ATTATGGTCGGAGTTTGATAACTGATTTCAAACTAGATGGTATCACTCATGATGGAGAGT 934
Query 1007 TTATTTACGTAC---TA---TCCACGTTTCTCAAATCGTTTTATGTTTTGTATTTTGATC 1060
|||||||||||| || ||||||||||||||||| |||||| |||| ||||||||||
Sbjct 935 TTATTTACGTACCAGTACCATCCACGTTTCTCAAATCATTTTATATTTTATATTTTGATC 994
Query 1061 CGAAGAAAAACAGCTTCAGAAAAGTCGAATTTAGAGGAAC-AGCGTACGAAGTATTTAGG 1119
||||||||| || ||||||||||||||| ||||||||||| | || |||||| |||||||
Sbjct 995 CGAAGAAAAGCAACTTCAGAAAAGTCGAGTTTAGAGGAACTA-CGGACGAAGAATTTAGG 1053
Query 1120 CTCAGTCATGGACTTGGAAACAAAAAAGTGAATAGGCTCTATACTTTCTCGCATCAC 1176
|||||| ||||| ||||| |||||| | |||||||||| |||||||||||||||||
Sbjct 1054 CTCAGTAATGGATTTGGAGACAAAAGACAGAATAGGCTCCATACTTTCTCGCATCAC 1110
> Ahg315031 jgi|Araly1|315031|fgenesh1_pm.C_scaffold_2000064
Length=1161
Score = 385 bits (208), Expect = 5e-106
Identities = 593/772 (77%), Gaps = 54/772 (7%)
Strand=Plus/Plus
Query 41 AAAGACGAAAAAGACAATCTTCTTCGATACCAAAAACAACAACATTGC-TC-TGTCCTCT 98
||||| ||| | |||||||||| || || | ||||| | | ||| | || | ||||||
Sbjct 38 AAAGAAGAAGAGGACAATCTTCATCAATGTC-AAAAC--C-ATATT-CTTCATTTCCTCT 92
Query 99 TGATCTAATCTTGGAGATACTCTTAAGGCTACCTGTTAAATCTGTTTTGAGGTTTCGTTG 158
||||||| || |||||||||||||| ||| |||| |||||| | |||| | ||||||
Sbjct 93 TGATCTAGCCTCGGAGATACTCTTAAAGCTGCCTGCAAAATCTATCGTGAGATCTCGTTG 152
Query 159 TGTTTCGAAGCTCTGGTTATCAACCACCACCGATCCATATTTTACCAACTCATACGAAGC 218
| || |||||||||| ||||| |||||| ||||||||||| | ||| |||| |||| |
Sbjct 153 CATATCAAAGCTCTGGTCATCAATCACCACAGATCCATATTTCATCAAGTCATTCGAAAC 212
Query 219 TCGATCCTCAACACGGCCAAGTCTTCTAATGTTCTTCAAAAACAA-GGACAAGTTGTTTG 277
||| |||| || ||||||||||||| | |||||| |||| || ||||||||||| ||
Sbjct 213 TCGGTCCTTGTCAAAGCCAAGTCTTCTACTATTCTTC-AAAAGAATGGACAAGTTGTGTG 271
Query 278 TTTTCACGTTTCCTCACCACAATCAGAATTC---C-A-AGG-A--G-ACTCATTCTTATT 328
||||| | ||||| || ||| ||||||| || | | || | | | | |||||| |
Sbjct 272 TTTTCTCATTTCCACAACACCATCAGAACTCGAACGAGCGGTATGGTAATGATTCTTCTC 331
Query 329 CTCAGCATGTGGATAGTTACCATATCAAATACCCTAAATATTGTTGCTTCCCCTTCACGG 388
|||||| | |||||| |||||| || |||| ||||||||||| ||||||| | |||| ||
Sbjct 332 CTCAGCCTTTGGATATTTACCAAATGAAATGCCCTAAATATTTTTGCTTCTCATTCATGG 391
Query 389 AATCTGTCCACGGGTTAATCAGCTTTCGAATATCTA-CAAAACCCATAATTTGGAACCCT 447
||||||||||||| || ||| ||||| ||| || || ||| |||||||||||||||||||
Sbjct 392 AATCTGTCCACGGCTTGATCTGCTTTAGAAAAT-TAGCAACACCCATAATTTGGAACCCT 450
Query 448 ACCATGAGACAGTTTTTAATC-TTG-CCTAAACCGGAAAAAAGCTGGAAGGGATTATCAG 505
||||||||||||||||||| | ||| || ||||| || || | ||||| | | | |
Sbjct 451 ACCATGAGACAGTTTTTAA-CATTGACC-AAACCCGACAAGACCTGGA-G--A--A---G 500
Query 506 TCTTTTTAGGATACGATCCAGTCGAAGGTAAACACAAACTAATGTGCATGAATCGTGATA 565
| | ||||||||||||| |||| |||||||||||| | | ||| || | ||||||
Sbjct 501 TAT----AGGATACGATCCAATCGAGGGTAAACACAAAGTTGTATGCTTGCCTGGTGATA 556
Query 566 ACA-CAAGCGATGAGTGTAGGGTTTTAACACTGGGATCAGCTCAAGAAAAATGGAGAAGG 624
| | | | || || ||| ||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 557 AAATCTGG-GAAGACTGTCGGGTTTTAACATTGGGATCAGGTCAAGAACAATGGAGAAGC 615
Query 625 ATCAAAAGTAACCTTAAGCATCGTTCT-ATCCTTCGTTACT-ATGGGCA-ATGCATTAAC 681
||||||| | |||| | |||| | || || || | || | ||||| | ||| || ||
Sbjct 616 ATCAAAACCAGCCTTGACCATCATCCTTATACT--GATAGTTATGGG-AGATGTATCAAT 672
Query 682 GGTGTTATATATTACCAAGCCTATATTGATCAGATGGGGTTTATTAGCAATC-CAA-C-- 737
|| ||| | ||||| ||||| ||||||| | || | | | | || || ||| |
Sbjct 673 GGGGTTCTGTATTATAAAGCCGGTATTGAT-A-ATCTG-TC-AGGA-CAGTCACAAGCGG 727
Query 738 T-ATAATGAGTTTTGAGGTCAGATCTGAAAAGTTCGATACGATAACATTACC 788
| |||||||||||||| |||||||||||||||||| || | |||||||||||
Sbjct 728 TTATAATGAGTTTTGATGTCAGATCTGAAAAGTTCCATGCAATAACATTACC 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5