BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G50880.1

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923550 jgi|Araly1|923550|scaffold_104831.1                        344    6e-94


> Ahg923550 jgi|Araly1|923550|scaffold_104831.1
Length=488

 Score =  344 bits (186),  Expect = 6e-94
 Identities = 287/334 (86%), Gaps = 13/334 (4%)
 Strand=Plus/Plus

Query  513  TACCATGTACAACAAGGATATCACACTGTGGGTTTTGGAGGATGCCAAATGGTTGTGCAA  572
            ||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct  131  TACCATGAACAACAAAGATATCACATTGTGGGTTTTGGAGGATGCTAAATGGTTGTGCAA  190

Query  573  ACACTTTACTAG-AGCATCTTATAATGATCAGCCTTTGCAAGCACTTTCCGGGATAAATG  631
            |||||||||| | | |||||| |  ||||||||||||  || |||||| ||| || ||||
Sbjct  191  ACACTTTACT-GCACCATCTT-T--TGATCAGCCTTTAAAATCACTTTGCGGAATTAATG  246

Query  632  GTATCACTGATGATGGTGAGTTTATTTATGTAGCATACGTTCTCGACTCGTTCTATATTT  691
            |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||
Sbjct  247  GTATCACTGATGATGGTGAGTTTATTTATGTACCATATGTTCTCAACTCGTTTTATATTT  306

Query  692  TATACTACGATCCGGAGAAAAAGAGCTACAGAAGAGTCGATCTTCAAGGAGTCGGCGATG  751
            |||| || ||||||||||||||| ||||||||| ||||||| || ||||| ||| |||||
Sbjct  307  TATATTATGATCCGGAGAAAAAGGGCTACAGAAAAGTCGATTTTGAAGGAATCGCCGATG  366

Query  752  CTGATTTTATGCTCCGTAATGGACTTGGAAAC-ATGGA-TGGAATTCGGATCCATACTTG  809
            ||||||||| |||| ||||||||||||||||| |  |  || | | ||  ||||||||||
Sbjct  367  CTGATTTTAGGCTCAGTAATGGACTTGGAAACGAAAGTCTGTA-TCCGT-TCCATACTTG  424

Query  810  CCTCA---ACATTGAGAGTCTATTGTCTTTGTAA  840
            | |||   ||| ||||||||| || |||||||||
Sbjct  425  CGTCAGTCACACTGAGAGTCTCTT-TCTTTGTAA  457


 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  476  AATCTAATGTTGACATTATAATGAGTTTTGATGTCAG  512
            |||| ||||||||||||||||||||||||||||||||
Sbjct  1    AATCCAATGTTGACATTATAATGAGTTTTGATGTCAG  37



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31070177355


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5