BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50890.1
Length=2877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923551 jgi|Araly1|923551|scaffold_104832.1 3969 0.0
> Ahg923551 jgi|Araly1|923551|scaffold_104832.1
Length=2509
Score = 3969 bits (2149), Expect = 0.0
Identities = 2389/2508 (95%), Gaps = 4/2508 (0%)
Strand=Plus/Plus
Query 271 ATCTCTACCAATTTCAAATGCGATCACAAACCGCTTCAAAAACTTCAATGAAACCTTCTT 330
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 4 ATCTCTACCAATTTCAAATGCGATCACAAACCGCTTCAAAATCTCCAATGAAACCTTCTT 63
Query 331 CAAATTCATCTGCGTTCTCCGTCAGATCCTCCGTCGCAGTTTCGTCTCACTCAGCAATGG 390
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 64 CAAATGCATCTTCGTTCTCCGTCAGATCCTCCGTCGCAGTTTCGTCTCACTTAGCAATGG 123
Query 391 TTGAATTGAAACAGAGAATCTTAACCTCTCTCTCTAGACTCGGTGATCGCGATACTTATC 450
| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 124 TGGAATTGAAGCAGAGGATCTTAACTTCTCTCTCTAGACTTGGTGATCGCGATACTTATC 183
Query 451 AGATAGCTGTAGATGATCTCGAGAAAATCGTCGTCTCCGTCCCCGATTCACCCGAAATCC 510
| || || || ||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 184 AAATCGCAGTCGATGATCTCGAGAAAATCGTCCTCTCCGTCTCCGATTCACCCGAAATTC 243
Query 511 TCCCCGTGCTTCTCCATTGTCTTTTCGATTCCTCCTCCGATCTTAAAGCTCCGGTCAAGA 570
| || |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 244 TTCCGGTGCTTCTCCATTGTCTTTTCGATTCCTTCTCCGATCCCAAACCTCCGGTCAAGA 303
Query 571 GAGAATCAATTCGTCTCCTCTCCTTTCTTTGCCTCTCTTACACCGATCTCTCCTTTTCAC 630
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 GAGAATCAATTCGTCTCCTCTCCTTTCTTTGCCTCTCTTACCCCGATCTCTCCTTTTCAC 363
Query 631 AATTAGCCAAAATCATCTCACACATCGTCAAGCGTCTCAAGGACGCCGATAACGGTGTAC 690
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 AATTAGCCAAAATCATCTCACACATCGTTAAGCGTCTCAAGGACGCCGATAACGGTGTAC 423
Query 691 GCGACGCTTGTCGCGACGCGATTGGTTCTCTCTCTGCGCAGTTTCTGAAGGAGAAGGAAG 750
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 424 GCGACGCTTGTCGCGACGCAATTGGTTCTCTCTCTGCGCAGTTTCTGAAAGAGAAGGAAG 483
Query 751 TAGAGAATGGAAATTATGTTGGGTCTTCGTTGGTGGGGCTATTTGCTAAACCCTTGTTTG 810
|||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 484 TAGAAAATGGAAATTCTGTTGGGTCTTCGTTGGTGGGGCTTTTTGCTAAACCTTTGTTTG 543
Query 811 AAGCAATGGCGGAGCAGAACAAAAGCTTACAATCTGGTGCTGCCATTTGTATGGGGAAGA 870
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 544 AAGCAATGGCGGAGCAGAACAAAAGCTTACAATCTGGTGCTGCGATTTGTATGGGGAAGA 603
Query 871 TGATTGATTCAGCAACGGAGCCTCCTGTTGCAGCTTTTCAAAAACTGTGCCCTAGAATCT 930
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 604 TGATTGATTCAGCAACGGAGCCTCCCGTTGCAGCTTTTCAAAAACTGTGCCCTAGAATCT 663
Query 931 CCAAGCTTTTGAATAGCCCCAATTACATTACTAAGGCTTCACTCTTACCCGTTGTTGGAA 990
|||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct 664 CCAAGCTTTTGAATAGCCCCAATTACATTACTAAGGGTTCACTCTTACCTGTAGTTGGAA 723
Query 991 GCTTGTCCCAGGTTGGAGCTATTGCACCACAGAGCTTGGAATCATTGCTACACAGCATTC 1050
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 724 GCTTGTCTCAGGTTGGAGCTATTGCACCACAGAGCTTAGAATCATTGCTACACAGCATTC 783
Query 1051 ACGAGTGCCTTGGATGTACGAATTGGGTTACTCGTAAAGCAGCTGCTGATGTCTTAATCT 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 784 ACGAGTGCCTTGGATGTACGAATTGGGTTACTCGTAAAGCAGCTGCTGATGTTTTAATCT 843
Query 1111 CCTTGGCTGTCCATTCTAGTAGCTTGGTTGCAGACAAAACAGATTCCACTCTTACAGCTC 1170
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 844 CCTTGGCTGTCCATTCTAGCAGTTTGGTTGCAGACAAAACAGATTCCACTCTTACAGCTC 903
Query 1171 TTGAGGCATGTCGTTTTGATAAGATAAAACCTGTTAGAGAAAGCTTGTCTGAAGCACTAA 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTGAGGCATGTCGTTTTGATAAGATAAAACCTGTTAGAGAAAGCTTGTCTGAAGCACTAA 963
Query 1231 ACGTCTGGAAGAACATTGCTGGAAAAGGTGAATCTGGAACAATGGATGACCAGAAGGATG 1290
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 964 ACGTCTGGAAGAACATTGCTGGAAAAGGTGAATCTGGAACATTAGATGACCAGAAGGATG 1023
Query 1291 TGTCATCTGAGCAATGTATATTGGAAAGGAATGGAGAAACTGATTCAGTTTCATGTGAGG 1350
||||||||||||||||||| || |||||||||||||||| ||||||| ||||||||||||
Sbjct 1024 TGTCATCTGAGCAATGTATGTTAGAAAGGAATGGAGAAATTGATTCATTTTCATGTGAGG 1083
Query 1351 AAGCAGGACTAGT-GATGCAAGGCTCTTGTGATGGTTTGAGCAGTAGTTCAGATTCTATT 1409
||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1084 AAGCAGGACC-GTTGATGCAAGGCTCTTGTGATGGTTTGAGCAGTAATTCAGATTCAATT 1142
Query 1410 TCAAAAGCAGTTCTCATTTTGAGAAAGAAGGCACCTCGGTTGACTGGCAAAGATCTTAAC 1469
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1143 TCGAAAGCAGTTCTCATTTTGAGGAAGAAAGCACCTCGGTTGACTGGCAAAGATCTTAAC 1202
Query 1470 CCAGAGTTTTTTCAGAAACTGGAAAAAAGAGGTTCTGGTGATATGCCAGTTGAAGTTATT 1529
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1203 CCAGAGTTTTTCCAGAAACTGGAAAAAAGAGATTCTGGTGATATGCCAGTTGAAGTTATT 1262
Query 1530 CTTCCTTCTAGGCAAAAGAATTCGTCGAACTCAAATACAGAGGATGAATCAGACGCCAAT 1589
||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1263 CTTCCCTGTAGGCAAAAGAATTCGTCGAACTCAAACACAGAGGATGAATCAGATGCCAAT 1322
Query 1590 ACTTCAGTATTAAGGAGTAGGTCAAATGGTTTGTGCAGAACTGCTGGTGTCCATACCAAA 1649
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1323 ACTTCAGTATCAAGGAGTAGGTCAAATGGTTTGTGCAGAACAGCTGCTGTCCATACCAAA 1382
Query 1650 CAAAGACATTTTGGAGATTTTGCAAGAGAAAAATGGGTTGATGAAAGAATGAACGGAGGC 1709
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1383 CAAAGACATTTTGGAGATTTTGCAAGAGAAAAATGGGTTGATGAAAGAACGAACGGTGGC 1442
Query 1710 GAATCACGGTTGAGAGCATTTGATGGAGATCATACTGAAGTAATCCAGGCGGACACATCT 1769
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1443 GAATCACGGTTGAGAGCATTTGATGGAGATCATACTGAAGTAATCCAGGCGGACGCATCT 1502
Query 1770 GAAAACAGAGGGAACTGGCCACCATTACAGAGACAGTTATTGCACTTGGAGAGACAACAA 1829
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1503 GAAAACAGAGGGAACTGGCCACCATTACAGAGACAGTTATTGCACTTGGAGAAACAACAA 1562
Query 1830 ACCCACATAATGAATATGTTGCAGGATTTCATGGGTGGTTCACATGACGGCATGATAAGT 1889
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1563 ACCCACATAATGAATATGTTACAGGATTTCATGGGTGGGTCACATGATGGCATGATAAGT 1622
Query 1890 TTGGAGAACCGTGTTAGAGGTCTTGAGAGGATTGTAGAAGAGATGTCTAGAGAAATGTCC 1949
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1623 TTGGAGAACCGTGTTAGAGGTCTAGAGAGGATTGTAGAAGAGATGTCTAGAGAAATGTCC 1682
Query 1950 ATACAATCAGGTGCGAGAGGAAAGGCGACTGCATCATGGAGATCTGATGTAGATGGATGG 2009
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1683 ATACAATCAGGTGCGAGAGGAAAGGCGGCTGCATCATGGAGATCTGATGTAGATGGATGG 1742
Query 2010 GATAGTCCTAACTATGGACCTTCTTCTAGAAACACTCAGACCAGTACAAGAAAGATACGT 2069
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1743 GATAGCCCTAACTATGGAGCTTCTTCGAGAAACACTCAGACCAGTACAAGAAAGATACGT 1802
Query 2070 GGCACTGGTCCTTCTGAGCAATCAGGTAACAGCAGAAGAGCTTGGGACAAAAGCTCTGTA 2129
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GGCACTGGTCCAACTGAGCAATCAGGTAACAGCAGAAGAGCTTGGGACAAAAGCTCTGTA 1862
Query 2130 GCAATTAGACTAGGTGAAGGACCTTCTGCTAGAAGCGTGTGGCAAGCATCAAAAGATGAA 2189
||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1863 GCAATAAGACTAGATGAAGGACCTTCTGCTAGAAGCGTTTGGCAAGCTTCAAAAGATGAA 1922
Query 2190 GCTACTCTTGAAGCAATACGTGTGGCTGGAGAAGACTGTGGAACATCAAGGAATAGGCGA 2249
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1923 GCTACTCTTGAAGCAATACGTGTGGCTGGAGAAGACTGTGGAACGTCAAGGAATAGGCGA 1982
Query 2250 GTATCTATTCCTGAAGCAGAAGCAATGATGGACGAAGATGATGATAACCGTGGGGGACAA 2309
||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 1983 GTATCTATTCCCGAAGCAGAAGCAATGCTGGACGAAGATGATGATGACCGTGGAGGACAA 2042
Query 2310 CAGGGAGACCCTATCTGGACTTGTTGGAGTAATTCGGTGCACGCACTTCGAGTTGGTGAT 2369
||| |||||||| |||||| | ||||||| ||| || |||||||||| ||||||||||||
Sbjct 2043 CAGCGAGACCCTGTCTGGAATAGTTGGAGCAATGCGATGCACGCACTCCGAGTTGGTGAT 2102
Query 2370 ACCGATTCTGCATTTGCTGAGGTATTATCTACTGGAGACGACCATTTACTTGTCAAGTTA 2429
||||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct 2103 ACCGATTCTGCATTTGCTGAGGTATTATCAACCGGAGACGATCATTTGCTTGTCAAGTTA 2162
Query 2430 ATGGACAAAACCGGTCCTGTTCTTGATCAACTATCGAGTGATATGGGAAACGAGGCTATC 2489
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2163 ATGGACAAAACCGGTCCTGTTCTTGATCAACTATCGAGTGATATTGGAAACGAGGCTATC 2222
Query 2490 CATTCTATTGCACAGTTTCTCCTGGATCATACTCTATATGATATCTGTCTATCTTGGATT 2549
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2223 CATTCTATTGCACAGTTTCTCCTGGATCATACTCTGTTTGATATCTGTCTATCTTGGATT 2282
Query 2550 CAACAGCTGCTAGAAGTAAGTGTAGAAAACGGAGCAGACTTTATGGGAATACCGTTGGAG 2609
|||||||| || ||||||| ||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2283 CAACAGCTACTGGAAGTAACTGTAGAAAATGGAGCAGACTTTATGGGAATACCATTGGAG 2342
Query 2610 TTGAAGAAGGAGCTTTTGTTGAATCTACATGAAGCTTTGTCGACAACAGATCCTCCAGAG 2669
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2343 TTGAAGAAGGAGCTTCTGTTGAATCTACATGAAGCTTCCTCGACAACAGATCCTCCTGAG 2402
Query 2670 GACTGGGAAGGTCTAGCTCCCGATCATCTTTTGGTC-GAGTTAGCATCTAATTGGAACAT 2728
||||||||||||||||||||||| |||||||||||| | |||||||||||| |||| |||
Sbjct 2403 GACTGGGAAGGTCTAGCTCCCGACCATCTTTTGGTCCG-GTTAGCATCTAACTGGACCAT 2461
Query 2729 CGAGATCCAACATTTTGACACGTAGAATGTTTGGAAGACATTACATTG 2776
|||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2462 CGAGCTCCAACATTTTGAAACATAGAATGTTTGGAAGACATTACATTG 2509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108595288495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5