BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50900.1
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950835 jgi|Araly1|950835|scaffold_802722.1 852 0.0
Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1 652 0.0
Ahg950836 jgi|Araly1|950836|scaffold_802723.1 207 7e-53
> Ahg950835 jgi|Araly1|950835|scaffold_802722.1
Length=574
Score = 852 bits (461), Expect = 0.0
Identities = 525/555 (95%), Gaps = 8/555 (1%)
Strand=Plus/Plus
Query 56 GAAGCATTAAGAGAACAGCCATGG---CTTCTTCTTCAATCTCATTCTCCTGTGCACCTT 112
|||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1 GAAGCATTAAGAGACCAGCCATGGCTTCTTCTTCTTCAATCTCATTCTCCTGCGCACCTT 60
Query 113 CTTTGGCCACCTCACTCTTCTCCAC--C-ACTTCTTCTTCCCCAAGGCTGCTCTCCTCTA 169
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 61 CTTTGGCCACCTCACTCTTCTCCACTTCTTCTTCTTCTTCCCCAAGGCTGCTCTCCTCTA 120
Query 170 GATTTCTCGGAACCCGAAACTTAAAGCTTCGGATCCGACCTGCCAGACTAGGACCCTCCA 229
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 121 GATTTCTCGGAACCCGAAACTTAAAGCTTCAGATCCGACCTGCCAGACTCGGACCCTCCA 180
Query 230 ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAATGGTGTCGATGCTGAAAATG 289
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 ATGGTTCAAGAACCACTTGCTGGTTCAAGTTCGGCAAGAACGGTGTCGATGCTGAAAATG 240
Query 290 CCGGAATCTATGGCAGCCAGTCTCGAGATGATTTCGACAGAGACGACGTCGAACAGTATT 349
|||| ||||||||||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 241 CCGGTATCTATGGCAGTCAGTCTCGCGATGATTTCGACAGAGACGATGTTGAACAGTATT 300
Query 350 TCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCTCTTCTTA 409
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 301 TCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCTCTTCTTA 360
Query 410 ACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC 469
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGTGACAGAC 420
Query 470 CTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCTGATGGAA 529
|||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 421 CTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCTGATGGAA 480
Query 530 GAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACT-CG 588
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 GAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGCTACAACG 540
Query 589 ACTCAAAAGGCTTGA 603
||||||||||||||
Sbjct 541 -CTCAAAAGGCTTGA 554
> Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1
Length=1910
Score = 652 bits (353), Expect = 0.0
Identities = 424/457 (93%), Gaps = 9/457 (2%)
Strand=Plus/Minus
Query 343 CAGTATTTCAACTACATGGGTATGCTTGCAGTAGAAGGAACCTATTCAAAGATGGAAGCT 402
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1909 CAGTATTTCAACTACATGGGTATGCTTGCGGTAGAAGGTACCTATTCAAAGATGGAAGCT 1850
Query 403 CTTCTTAACCTAAACATTCACCCAGTTGATATCTTGTTGATGTTAGCCGCTACAGAAGGT 462
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1849 CTTCTTAGCCTAAACATTCACCCAGTCGATATCTTGTTGATGTTAGCCGCTACAGAAGGT 1790
Query 463 GACAGACCTAAGATCGAGGAGCTTCTCAAAGCCGGTGCTGATTATTCGGTCAAGGACGCT 522
||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| |||
Sbjct 1789 GACAGACCTAAGATCGAGGAGCTGCTCAAAGCTGGTGCTGATTACTCAGTCAAGGATGCT 1730
Query 523 GATGGAAGAACCGCTATCGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC 582
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 GATGGAAGAACCGCTATTGACAGAGCCAACAGTGAAGAGATCCGTGATTTGATCCTTGGC 1670
Query 583 TACT-CGACTCAAAAGGCTTGA----CTCC-G-CTTGGTTTTAATACACAGGAACAACAC 635
||| || |||||||||||||| || | |||||| ||||||||||||||| ||||
Sbjct 1669 TACAACG-CTCAAAAGGCTTGAAGAACTTGTGTCTTGGTATTAATACACAGGAACCACAC 1611
Query 636 AAGTTATGTTCTTGAGTTTTGAAATGTTTGTGTTTGCTAGAACAAACTGTCTTTCTGTGT 695
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1610 AAGTTATGTTCTTGGGTTTTGAAATGTTT-TGTTTGCTAGAACAAACTGTCTTTCTGGGT 1552
Query 696 TCCGCGGATGAGTAGATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGCCAGTTTC 755
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1551 TCCGCGGATGAGTAGATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGACTGTTTC 1492
Query 756 TTGTTTCTTCAATGGGGGTTGTTCTATGGTGTTTGGC 792
|||||||||| |||| ||| |||||||||||| |||
Sbjct 1491 TTGTTTCTTCCTTGGGCGTTCTTCTATGGTGTTAGGC 1455
> Ahg950836 jgi|Araly1|950836|scaffold_802723.1
Length=1412
Score = 207 bits (112), Expect = 7e-53
Identities = 133/143 (93%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 650 AGTTTTGAAATGTTTGTGTTTGCTAGAACAAACTGTCTTTCTGTGTTCCGCGGATGAGTA 709
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1412 AGTTTTGAAATGTTT-TGTTTGCTAAAACAAACTGTCTTTCTGTGTTCCGCGGATGAGTA 1354
Query 710 GATTATAAAATCCATCTTCTTCCTTTTTGTCTTTCTCGCCAGTTTCTTGTTTCTTCAATG 769
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 1353 GATTATAAAATCCATCTTTTTCCTTTTCGTCTTTCTCGCCAGTTTCTTGTTTCTTCCTTA 1294
Query 770 GGGGTTGTTCTATGGTGTTTGGC 792
||||| |||||||||||| |||
Sbjct 1293 AGGGTTCTTCTATGGTGTTAGGC 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5