BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50910.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1 2891 0.0
Ahg950836 jgi|Araly1|950836|scaffold_802723.1 1700 0.0
Ahg925372 jgi|Araly1|925372|scaffold_200933.1 907 0.0
Ahg950835 jgi|Araly1|950835|scaffold_802722.1 411 1e-113
> Ahg474212 jgi|Araly1|474212|fgenesh2_kg.1__4166__AT1G50910.1
Length=1910
Score = 2891 bits (1565), Expect = 0.0
Identities = 1802/1916 (94%), Gaps = 18/1916 (1%)
Strand=Plus/Plus
Query 24 AGTTGCAGGTCTCTAAAACCCTACCCTCTAAAAGAATCAGAGTTCCATTG--AAATTGCT 81
||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||| |
Sbjct 1 AGTTGCAGGTCTCTAAAACCCTAACCT-TACAAGAATCAGAGTTCCATTGAAAAATTGTT 59
Query 82 TGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGAAGAGTCA 141
|||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 60 TGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGAAGAGTCA 119
Query 142 GCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGAATAAGAA 201
||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 GCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGAATAAGAA 179
Query 202 CCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAATTGAGACT 261
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGAATTGAGACT 239
Query 262 TTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATATCTGGGAG 321
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 240 TTTACGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTTCTGGGAG 299
Query 322 AATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTGATACTGG 381
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTGATACTGG 359
Query 382 GAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGATGACTGA 441
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 360 GAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGATGACTGA 419
Query 442 ACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCTTCATAGG 501
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 420 ACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTTTCATAGG 479
Query 502 ATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAACAAATATT 561
||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||||
Sbjct 480 ATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAACAAATATT 539
Query 562 ACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAACAGTCTGT 621
|||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 ACTTGATGCTGTTTCAATTTTCAATTCGGTAACATCTACATCACTGAAGAAACAGTCTGT 599
Query 622 CAAGATAGCACAGGACGGGGTTGAGGTTTTCCGCGAGTTCTATCCAAAGGAAGAAGAGTG 681
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 CAAGATAGCACAGGACGGGGTTGAGGTATTCCGCGAGTTCTATCCAAAGGAAGAAGAGTG 659
Query 682 TGTCACCTTATTGGATTGTGTATGGAAGACTGATAAATATGTCTTACTCGA-GACATTGC 740
| |||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 660 TATCACCTTATTGGATTGTGTATGGAAGACCGATAAATATGTCTTACT-GAAGACATTGC 718
Query 741 AGAACTCTGAGAATAGTAAACCTATGGaaaaaaaTGTCTCAGAAGATGTTACTACTAGGG 800
|||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 719 AGAACTATGAGAATAGTAAACCTATGGAGGAAAATGTCTCTGAAGATGCTACTACTAGGG 778
Query 801 ACTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGCGGAAGATCTCTCTCCTTTGC 860
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 ATTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGGGGAAGATCTCTCTCCTTTGC 838
Query 861 TTCGA-GCAGACAACAGTGGTGCTACTGTGAGAGAAAGTTCGACTCCCATTGATGAAGCA 919
|| || ||||||| |||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 839 TT-GAAGCAGACAGCAGTGGTGTTACTGTGAGAAAAAGTTCGACTCCCATTGCTGAAGCA 897
Query 920 GCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAACCCAGAAGATGCG 979
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 898 GCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAAACTAGAAGATGTG 957
Query 980 ACAACTAGGGACTGTTCGGTTCAGTATGAAACGTTTGTTTCTCCTCTTGGAGAAGATCTC 1039
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 ACAACTAGGGACTGTTCAGTTCAGTATGAAACGTTTGTTTCTCCTCTAGGAGAAGATCTC 1017
Query 1040 TCTCCTTTGCTTGAAGCCGACAACAGTGGTGTTACTTTGAGAGAAAGTTCTACTCCCATT 1099
|||||||||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 1018 TCTCCTTTGCGTGAAGCCGACAACTGTGGTGTTACTGTGAGAGAGAGTTCTACTCCCATT 1077
Query 1100 GCCGAAGCAGCTTCTTCCAAGACTAACAATGCATCGCAACCAGAAGATTCAGAAAACCTA 1159
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1078 GCCGAAGCAGCTCCTTCCAAGACTAACAATGCATTGCAACCAGAAGATTCAGAAAACCCA 1137
Query 1160 GAAGATACTACAACTAAGGATTGTTCAATTCAGTATCAAACGTTTGTTTCTCCTCTTGGA 1219
|||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1138 GAAGATGCTACAACTAGGGATTGTTCAATTCAGTACCAAACGTTTGTTTTTCCTCTCGGA 1197
Query 1220 GAAGATATCACACCTTCTCCTCTGCCTGATGCAGACGAAAACGGATATGATACTGCTACA 1279
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1198 GAAGATATCACACCTTCTCCTCTGCCTGATGCAGACGAAAACAGATATGTTACTGCTACA 1257
Query 1280 GAGTCTTTGACTCCCATTGCTGAAGCAGCCTCTTCCAAGACTAACGATGAATCCCAAACA 1339
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1258 GAGTCTTTGACTCCCATTGCTGAAGCAGCCTCTTCCAAGACTAACAATGGATCCCAAACA 1317
Query 1340 GAAGATATG-GAAAAAGTAGAAGATGAATCTACAAATCCCGTGAGCTCGGCAAAAATTAA 1398
|||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 GAAGAT-TCAGAAAAACCAGAAGATGAATCTACAAATCCCGTGAGCCCGGCAAAAATTAA 1376
Query 1399 CAGAGACACAGTAAAACCAAGATTCAGAGCAACCAAGGTAGCGTTTCTACCTGTAAAAAG 1458
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1377 CAGAGACACAGTAAAACCAAGATGCAGAGCAACCAAGGTAGCGTTTCTACCCGTGAAAAG 1436
Query 1459 ACCTTCATCTGCAATAACGCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAAC 1518
||||||||||||||||| ||| |||||||||||| ||| |||| |||||||||||||||
Sbjct 1437 ACCTTCATCTGCAATAATGCCTAACACCATAGAAGAACGCCCAAGGAAGAAACAAGAAAC 1496
Query 1519 TGGCGAGAAAGACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACA 1578
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1497 AGTCGAGAAAGACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACCCA 1556
Query 1579 GAAAGACAGTTTGTTCTAGCAAACACAAACATTTCAAAACTCAAGAACATAACTTGTGTT 1638
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1557 GAAAGACAGTTTGTTCTAGCAAACA-AAACATTTCAAAACCCAAGAACATAACTTGTGTG 1615
Query 1639 GTTCCTGTGTATTAAAACCAAG-CGGA-GT-C---AAGCCTTTTGAGTCGA-GTAGCCAA 1691
||||||||||||||| |||||| | | || | |||||||||||| || ||||||||
Sbjct 1616 GTTCCTGTGTATTAATACCAAGACACAAGTTCTTCAAGCCTTTTGAG-CGTTGTAGCCAA 1674
Query 1692 GGATCAAATCACGGATCTCTTCACTGTTGGCTCTGTCGATAGCGGTTCTTCCATCAGCGT 1751
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1675 GGATCAAATCACGGATCTCTTCACTGTTGGCTCTGTCAATAGCGGTTCTTCCATCAGCAT 1734
Query 1752 CCTTGACCGAATAATCAGCACCGGCTTTGAGAAGCTCCTCGATCTTAGGTCTGTCACCTT 1811
||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1735 CCTTGACTGAGTAATCAGCACCAGCTTTGAGCAGCTCCTCGATCTTAGGTCTGTCACCTT 1794
Query 1812 CTGTAGCGGCTAACATCAACAAGATATCAACTGGGTGAATGTTTAGGTTAAGAAGAGCTT 1871
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1795 CTGTAGCGGCTAACATCAACAAGATATCGACTGGGTGAATGTTTAGGCTAAGAAGAGCTT 1854
Query 1872 CCATCTTTGAATAGGTTCCTTCTACTGCAAGCATACCCATGTAGTTGAAATACTGC 1927
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1855 CCATCTTTGAATAGGTACCTTCTACCGCAAGCATACCCATGTAGTTGAAATACTGC 1910
> Ahg950836 jgi|Araly1|950836|scaffold_802723.1
Length=1412
Score = 1700 bits (920), Expect = 0.0
Identities = 1081/1157 (93%), Gaps = 17/1157 (1%)
Strand=Plus/Plus
Query 75 AATTGCTTGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGA 134
||||| ||||| ||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1 AATTGTTTGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGA 60
Query 135 AGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGA 194
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGAGTCAGCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGA 120
Query 195 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAAT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 121 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGACT 180
Query 255 TGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATAT 314
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 181 TGAGACTTTTAAGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTT 240
Query 315 CTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 374
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGGAGAATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 300
Query 375 ATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGA 434
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 301 ATACTGGGAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGA 360
Query 435 TGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCT 494
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 361 TGACTGAACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTT 420
Query 495 TCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAAC 554
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||
Sbjct 421 TCATAGGATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAAC 480
Query 555 AAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAAC 614
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 AAATATTACTTGATGCTGTTTCAGTTTTCAATTCGGTAACATCTACATCACTGAAGAAAC 540
Query 615 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTTTTCCGCGAGTTCTATCCAAAGGAAG 674
|||||||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 541 AGTCTGTCAAGATAGCACAGGACGGGGTTGAG-TT--C------T---ATCCAAAGGAAG 588
Query 675 AAGAGTGTGTCACCTTATTGGATTGTGTATGGAAGACTGATAAATATGTCTTACTCGAGA 734
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 589 AAGAGTGTATCACCTTATTGGATTGTGTATGGAAGACCGATAAATATGTTTTACTCGAGA 648
Query 735 CATTGCAGAACTCTGAGAATAGTAAACCTATGGaaaaaaaTGTCTCAGAAGATGTTACTA 794
|||||||||||| ||||||||||||||||||||| ||| | |||||||||||| |||||
Sbjct 649 CATTGCAGAACTGTGAGAATAGTAAACCTATGGAGGAAATTTTCTCAGAAGATGCTACTA 708
Query 795 CTAGGGACTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGCGGAAGATCTCTCTC 854
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 709 TTAGGGATTCTTTGGTACAGTATCAAACATCTGTTTCTTCTCTCGGGGAAGATCTCTCTC 768
Query 855 CTTTGCTTCGA-GCAGACAACAGTGGTGCTACTGTGAGAGAAAGTTCGACTCCCATTGAT 913
|||||||| || | |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 769 CTTTGCTT-GAAGTAGACAACAGTGGTGTTACTGTGAGAGAAAGTTCGACTCCCATTGCT 827
Query 914 GAAGCAGCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAGGATTCAGAAAACCCAGAA 973
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 828 GAAGCAGCTTCGTCCAAGACTAACATTGGGTTGCAACCAGAAGATTCAGAAAAACCAGAA 887
Query 974 GATGCGACAACTAGGGACTGTTCGGTTCAGTATGAAACGTTTGTTTCTCCTCTTGGAGAA 1033
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 888 GATGTGACAACTAGGGACTGTTCAGTTCAGTATGAAACGTTTGTTTCTCCTCTAGGAGAA 947
Query 1034 GATCTCTCTCCTTTGCTTGAAGCCGACAACAGTGGTGTTACTTTGAGAGAAAGTTCTACT 1093
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 948 GATCTCTCTCCTTTGCGTGAAGCCGACAACAGTGGTGTTACCATGAGAGAAAGTTCTACT 1007
Query 1094 CCCATTGCCGAAGCAGCTTCTTCCAAGACTAACAATGCATCGCAACCAGAAGATTCAGAA 1153
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1008 CCCATTGTCGAAGCAGCTTCTTCCAAGACTAACAATGCATTGCAACCAGAAGATTCAGAA 1067
Query 1154 AA-CCTAGAAGATACTACAACTAAGGATTGTTCAATTCAGTATCAAACGTTTGTTTCTCC 1212
|| || ||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1068 AATCC-AGAAGATGCTACAACTAGGGATTGTTCAATTCAGTGCCAAACGTTTGCTTCTCC 1126
Query 1213 TCTTGGAGAAGATATCA 1229
||| ||||||||| |||
Sbjct 1127 TCTCGGAGAAGAT-TCA 1142
Score = 403 bits (218), Expect = 2e-111
Identities = 254/271 (94%), Gaps = 3/271 (1%)
Strand=Plus/Plus
Query 1350 AAAAAGTAGAAGATGAATCTACAAATCCCGTGA-GCTCGGCAAAAATTAACAGAGACACA 1408
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1144 AAAAAGTAGAAGATGAATCTACAAATCCCGTGAGGC-CGACAAAAATTAACAGAGACACA 1202
Query 1409 GTAAAACCAAGATTCAGAGCAACCAAGGTAGCGTTTCTACCTGTAAAAAGACCTTCATCT 1468
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1203 GTAAAACCAAGATGCAGAGCAACCAAGGTAGCGTTTCTACCCGTGAAAAGACCTTCATCT 1262
Query 1469 GCAATAACGCCAAACACCATAGAACAACCCCCATTGAAGAAACAAGAAACTGGCGAGAAA 1528
||||||| ||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1263 GCAATAATGCCTAACACCATAGAAGAACCCTTAAGGAAGAAACAAGAAACTGGCGAGAAA 1322
Query 1529 GACAAAAAGGAAGAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGT 1588
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GACGAAAAGGAAAAAGATGGATTTTATAATCTACTCATCCGCGGAACACAGAAAGACAGT 1382
Query 1589 TTGTTCTAGCAAACACAAACATTTCAAAACT 1619
||||| ||||||||| |||||||||||||||
Sbjct 1383 TTGTTTTAGCAAACA-AAACATTTCAAAACT 1412
> Ahg925372 jgi|Araly1|925372|scaffold_200933.1
Length=616
Score = 907 bits (491), Expect = 0.0
Identities = 547/575 (95%), Gaps = 0/575 (0%)
Strand=Plus/Plus
Query 75 AATTGCTTGAAGAAAACTCCATGGATGATACACAAGTTAAAGCTCTAGAAGAGAAGCTGA 134
||||| ||||| ||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 1 AATTGTTTGAATAAAACTCCATGGATGATACACAAGTCAAAGCTCTGGAGGAGAAGCTGA 60
Query 135 AGAGTCAGCTAAGTCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTTTACAAGA 194
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AGAGTCAGCTTGGCCAGCTTGAACTCGAGCAAGCGGTGTTCGAGAGAATGGTCTACAAGA 120
Query 195 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGAGAAT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 121 ATAAGAACCAGCATCGGAGATGCTCTTATTTTCAATACCTTCTCAAGGTGAGAAGGGACT 180
Query 255 TGAGACTTTTACGAACAGCAAACATGGAGGGTATGTTGAGACCTTGCTTTCATGTTATAT 314
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 181 TGAGACTTTTAAGAACAGCAAACATGGAGAGTATGTTGAGACCTTGCTTTCATGTTATTT 240
Query 315 CTGGGAGAATAAGTAAACAGAAAATCCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 374
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGGAGAATAAGTAAACAGAAGATTCATGTTTTGGAGAGCTTGAAGTTGAAAAAATCTG 300
Query 375 ATACTGGGAAACCAAATATCTTGGAACGGCTTCTTGGAGCTCTTCGTTTACTCTCACAGA 434
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 301 ATACTGGGAAACCAAATATCTTGGAACGACTTCTTGGAGCTCTTCATTTACTCTCACAGA 360
Query 435 TGACTGAACCCATCTTAAAGGCAGCTAGTGGGATATCTACTCTACTAGCTCGTTCATTCT 494
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 361 TGACTGAACCCATCTTGAAGGCAGCTAGTGGGATATCCACTCTACTAGCTCGTTCATTTT 420
Query 495 TCATAGGATTTTCTGTGACATTTTTGGCGCTGCTTGCACGTCTCCGAGTATTGGTCCAAC 554
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||
Sbjct 421 TCATAGGATTTTCTGTGACATTTTTGGCCCTGCTTGCACGCCTCCGAGTGTTGATTCAAC 480
Query 555 AAATATTACTTGACGCTGTTTCAGTTTTCAATTCGGTGACATCTACATCACTGAAGAAAC 614
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 AAATATTACTTGATGCTGTTTCAGTTTTCAATTCGGTAACATCTACATCACTGAAGAAAC 540
Query 615 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 649
|||||||||||||||||||||||||||||||||||
Sbjct 541 AGTCTGTCAAGATAGCACAGGACGGGGTTGAGGTT 575
> Ahg950835 jgi|Araly1|950835|scaffold_802722.1
Length=574
Score = 411 bits (222), Expect = 1e-113
Identities = 249/262 (95%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 1666 TCAAGCCTTTTGAGTCG-AGTAGCCAAGGATCAAATCACGGATCTCTTCACTGTTGGCTC 1724
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 554 TCAAGCCTTTTGAG-CGTTGTAGCCAAGGATCAAATCACGGATCTCTTCACTGTTGGCTC 496
Query 1725 TGTCGATAGCGGTTCTTCCATCAGCGTCCTTGACCGAATAATCAGCACCGGCTTTGAGAA 1784
|||| |||||||||||||||||||| |||||||| || ||||||||||| |||||||| |
Sbjct 495 TGTCAATAGCGGTTCTTCCATCAGCATCCTTGACTGAGTAATCAGCACCAGCTTTGAGCA 436
Query 1785 GCTCCTCGATCTTAGGTCTGTCACCTTCTGTAGCGGCTAACATCAACAAGATATCAACTG 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 435 GCTCCTCGATCTTAGGTCTGTCACCTTCTGTAGCGGCTAACATCAACAAGATATCGACTG 376
Query 1845 GGTGAATGTTTAGGTTAAGAAGAGCTTCCATCTTTGAATAGGTTCCTTCTACTGCAAGCA 1904
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 375 GGTGAATGTTTAGGCTAAGAAGAGCTTCCATCTTTGAATAGGTACCTTCTACCGCAAGCA 316
Query 1905 TACCCATGTAGTTGAAATACTG 1926
||||||||||||||||||||||
Sbjct 315 TACCCATGTAGTTGAAATACTG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5