BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50920.1
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470457 jgi|Araly1|470457|fgenesh2_kg.1__411__AT1G50920.1 3506 0.0
Ahg919805 jgi|Araly1|919805|scaffold_101086.1 1515 0.0
> Ahg470457 jgi|Araly1|470457|fgenesh2_kg.1__411__AT1G50920.1
Length=2238
Score = 3506 bits (1898), Expect = 0.0
Identities = 2119/2227 (95%), Gaps = 9/2227 (0%)
Strand=Plus/Plus
Query 105 ATCGATAAGCGAAGATGGTTCAATATAATTTCAAGAGGATCACAGTTGTTCCCAATGGGA 164
||||||||||||| ||||||||||| || ||||||| |||||| ||||||||||||||||
Sbjct 15 ATCGATAAGCGAAAATGGTTCAATACAACTTCAAGAAGATCACTGTTGTTCCCAATGGGA 74
Query 165 AGGAGTTCGTTGACATCATCCTTTCACGGACTCAGCGTCAGACACCAACTGTTGTCCACA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGGAGTTCGTTGACATCATCCTTTCACGGACTCAGCGTCAGACACCAACTGTTGTCCACA 134
Query 225 AGGGTTACAAGATTAACCGTCTCCGTCAGTTCTACATGAGAAAGGTTAAGTACACTCAGA 284
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 AGGGCTACAAGATTAACCGTCTCCGTCAGTTCTACATGAGAAAGGTTAAGTACACTCAGA 194
Query 285 CCAACTTCCATGCGAAGCTCTCTGCAATCATTGACGAGTTTCCTCGCCTTGAACAAATCC 344
| |||||||||| ||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 195 CAAACTTCCATGAGAAGCTCTCCACAATCATTGAGGAGTTTCCTCGCCTTGATCAAATCC 254
Query 345 ATCCTTTCTATGGTGATCTTCTTCATGTGCTTTACAATAAAGATCATTACAAGCTTGCTT 404
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 255 ATCCTTTCTATGGTGATCTTCTTCACGTGCTTTACAATAAAGATCATTACAAGCTTGCTT 314
Query 405 TAGGCCAAGTGAACACCGCCAGGAACTTGATTAGCAAAATCTCCAAGGATTATGTGAAGC 464
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TAGGCCAAGTGAATACTGCGAGGAACTTGATTAGCAAAATCTCCAAGGATTATGTGAAGC 374
Query 465 TACTCAAGTATGGTGATTCTTTGTACCGCTGCAAGTGTCTTAAGGTTGCTGCTCTTGGTC 524
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 375 TACTCAAGTATGGTGATTCTTTGTACCGGTGCAAGTGTCTTAAAGTCGCTGCTCTTGGTC 434
Query 525 GTATGTGCACTGTTTTGAAGCGAATCACTCCTAGTTTGGCTTATCTCGAGCAGATCAGGC 584
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 435 GTATGTGCACTGTTTTGAAGAGGATCACTCCTAGTTTGGCTTATCTCGAGCAGATCAGGC 494
Query 585 AGCACATGGCTAGGCTTCCTTCCATCGATCCTAACACTCGTACTGTCTTGATTTGTGGTT 644
|||||||||| |||||||||||||| || || |||||||||||||||||||| ||||| |
Sbjct 495 AGCACATGGCAAGGCTTCCTTCCATTGACCCAAACACTCGTACTGTCTTGATCTGTGGAT 554
Query 645 ACCCTAATGTTGGCAAGAGTTCTTTTATGAACAAGGTCACCAGAGCTGATGTTGACGTCC 704
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 555 ACCCTAATGTGGGCAAGAGTTCTTTTATGAACAAGGTTACCAGAGCTGATGTTGATGTCC 614
Query 705 AGCCTTATGCTTTCACCACCAAATCCCTCTTTGTTGGTCATACTGATTACAAGTATCTCA 764
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 615 AGCCATATGCTTTCACCACCAAATCGCTCTTTGTTGGTCATACTGATTACAAGTACCTGA 674
Query 765 GGTACCAAGTCATTGATACCCCCGGGATTTTGGATAGGCCCTTTGAGGACCGCAACATCA 824
|||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||
Sbjct 675 GGTACCAAGTCATTGATACCCCTGGGATTTTGGACAGGCCATTTGAAGACCGTAACATCA 734
Query 825 TTGAAATGTGCAGTATCACTGCCTTGGCCCATCTTCGAGCTGCTGTTTTGTTCTTTCTCG 884
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 735 TTGAAATGTGCAGTATCACAGCTTTGGCCCATCTTCGAGCTGCTGTTTTGTTCTTTCTGG 794
Query 885 ACATTTCTGGATCATGTGGTTACACTATTGCTCAGCAGGCTGCTCTTTTCCACAGCATCA 944
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 795 ACATTTCTGGATCATGTGGTTACACCATTGCTCAGCAGGCTGCTCTTTTCCACAGCATTA 854
Query 945 AGTCCCTCTTTATGAACAAACCCTTGGTCATTGTCTGCAACAAGACTGATTTGATGCCCA 1004
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 855 AGTCCCTGTTTATGAACAAACCATTGGTGATTGTCTGCAACAAGACTGATTTGATGCCCA 914
Query 1005 TGGAAAACATCTCTGAAGAAGATCGGAAGCTGATTGAAGAGATG-AAGTCTGAAGCTATG 1063
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 915 TGGAAAACATCTCTGAAGAAGATCGGAAGCTGATTGAAGAGATGAAAG-CTGAAGCTATG 973
Query 1064 AAGACTGCAATGGGAGCAAGTGAAGAA-CAAGTGCTTTTGAAGATGAGCACTCTGACAGA 1122
||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 974 AAGACTGCAATGGGAGCAAGTGAAGAAGC-TGTGCTTTTGAAGATGAGTACTCTGACAGA 1032
Query 1123 CGAAGGTGTCATGTCTGTGAAGAATGCCGCATGTGAGAGGCTGTTAGATCAAAGGGTAGA 1182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CGAAGGTGTGATGTCTGTGAAGAATGCCGCATGTGAGAGGCTGTTAGATCAAAGGGTAGA 1092
Query 1183 GGCCAAGATGAAATCCAAAAAGATCAACGACCACCTAAACAGGTTCCATGTGGCTATCCC 1242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1093 GGCGAAGATGAAATCCAAAAAGATCAACGACCACCTAAACAGGTTCCATGTGGCTATGCC 1152
Query 1243 GAAGCCTCGTGATAGCATAGAAAGGCTCCCTTGCATACCTCAGGTTGTTCTGGAGGCTAA 1302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GAAGCCTCGTGATAGCATACAAAGGCTCCCTTGCATACCTCAGGTTGTTCTGGAGGCTAA 1212
Query 1303 AGCTAAGGAAGCAGCTGCAATGGAGAAACGAAAGACTGAGAAAGATTTGGAAGAGGAGAA 1362
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1213 AGCTAAGGAAGCAGCTGCAATGGAGAAACGAAAGACAGAGAAAGATTTGGAAGAGGAAAA 1272
Query 1363 TGGTGGAGCTGGAGTTTATTCTGCTAGTCTAAAGAAGAACTACATCTTGCAACATGATGA 1422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1273 TGGTGGAGCTGGAGTTTATTCTGCTAGTCTAAAGAAGAACTACATCTTGCATCATGATGA 1332
Query 1423 ATGGAAGGAAGACATTATGCCTGAGATTCTCGATGGTCACAATGTGGCTGACTTCATTGA 1482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1333 ATGGAAGGAAGACATTATGCCTGAGATTCTCGATGGTCATAATGTGGCTGACTTCATTGA 1392
Query 1483 TCCAGACATTTTGCAGAGGCTTGCA-GAGTTGGAACGTGAAGAAGGGATAAGGGAGGCTG 1541
||||||||||||| ||||||||| | ||||||||||||||||||| |||||| |||||
Sbjct 1393 TCCAGACATTTTGGAGAGGCTTG-AGGAGTTGGAACGTGAAGAAGAGATAAGACTGGCTG 1451
Query 1542 GGGTTGAAGAAGCTGATATGGAGATGGATATTGAAAAGCTTTCGGATGAGCAGCTGAAGC 1601
||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||
Sbjct 1452 GGGTTGAAGAAGCTGATATGGAGATGGATTTTGAAAAGCTTTCGGAGGAGGAGGTGAAGC 1511
Query 1602 AGCTTTCTGAGATTAGAAAGAAGAAAGCTATACTCATTAAAAACCACAGGCTCAAGAAGA 1661
||||| ||| ||| ||||||||| |||| |||||||| | | ||||||||||||||||
Sbjct 1512 AGCTTGCTGCCATTCGAAAGAAGAGAGCTGTACTCATTCGAGAGCACAGGCTCAAGAAGA 1571
Query 1662 CCGTTGCACAGAACCGATCAACTGTTCCAAGAAAGTTTGATAAGGACAAGAAGTACACAA 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CCGTTGCACAGAACCGATCAACTGTTCCAAGAAAGTTTGATAAGGACAAGAAGTACACAA 1631
Query 1722 CAAAGAGAATGGGTAGGGAGTTATCAGCTATGGGACTTGATCCGTCTTCTGCAATGGACC 1781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1632 CAAAGAGAATGGGTAGGGAGTTATCAGCTATGGGACTTGATCCGTCTTCTGCAATGAACC 1691
Query 1782 GTGCAAGAAGCAAGTCTAGAGGGAGGAAGAGGGATCGATCAGAAGATGCGGGTAATGATG 1841
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1692 GCGCAAGAAGCAAGTCTAGAGGGAGAAAGAGGGATCGATCAGAAGATGCGGGTAACGATG 1751
Query 1842 CTATGGACGTTGATGATGAGCAACAGTCGAACAAGAAGCAGCGTGTGAGATCAAAGTCTA 1901
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CAATGGACGTGGATGATGAGCAACAGTCGAACAAGAAGCAGCGTGTGAGATCAAAGTCTA 1811
Query 1902 GAGCTATGTCGATATCAAGATCTCAGTCGAGGCCTCCTGCACATGAAGTTGTGCCTGGTG 1961
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1812 GAACTATGTCGATATCAAGATCTCAGTCAAGGCCTCCTGCACATGAAGTGGTGCCTGGTG 1871
Query 1962 AAGGATTCAAAGACTCTACTCAGAAGTTATCGGCCATTAAGATTAGCAATAAATCTCACA 2021
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1872 AAGGATTCAAAGACTCTACTCAGAAGAAATCGGCCATTAAGATTAGCAATAAATCTCACA 1931
Query 2022 AAAAGAGAGACAAGAATGCACGTCGTGGTGAAGCTGACAGAGTTATACCAACGCTTAGAC 2081
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1932 AAAAGAGAGACAAGAATGCACGTCGTGGTGAAGCTGACAGAGTTATACCAACACTTAGAC 1991
Query 2082 CGAAACATTTGTTTTCAGGCAAGAGAGGGAAAGGAAAAACCGACAGGCGTTGATGAAACC 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1992 CGAAACATTTGTTTTCAGGCAAGAGAGGGAAAGGAAAAACCGACAGGCGTTGATGAAACC 2051
Query 2142 AAACAAGAGAAAACAGATGCTGGATCCGTTGAAGAATCTCTGTCAAGTTTTGGAATTTGC 2201
|||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||||
Sbjct 2052 AAACAAGAGAAAACAGATGCTGCAGCCATTGAAGAATCTCTCTCAAGTTTTGGAATTTGC 2111
Query 2202 TTTACCTTTAGGTTACTTTTTATATTCTGCATCGTTTGTGTTTTTTCTCAGACATTTATG 2261
||||||||||| |||||| |||| || |||||||||||||||||||| ||||||||||||
Sbjct 2112 TTTACCTTTAGTTTACTTGTTATGTTTTGCATCGTTTGTGTTTTTTCGCAGACATTTATG 2171
Query 2262 GATTATTATTATTAT-A--GCTTTCCAGTGTGTTTGGAGGACGAATGCTCGTTTAAGCAA 2318
||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2172 GATTATTATTATTATTATAGCTTTCCAGTGTGTTTGGAGGACGAATATTCGTTTAAGCAA 2231
Query 2319 ACCTTAT 2325
|||||||
Sbjct 2232 ACCTTAT 2238
> Ahg919805 jgi|Araly1|919805|scaffold_101086.1
Length=2048
Score = 1515 bits (820), Expect = 0.0
Identities = 1657/2051 (81%), Gaps = 97/2051 (5%)
Strand=Plus/Plus
Query 128 TATAATTTCAAGAGGATCACAGTTGTTCCCAATGGGAAGGAGTTCGTTGACATCATCCTT 187
||||||||||||| ||| |||||||| || ||||| || |||| ||||| ||| | |||
Sbjct 31 TATAATTTCAAGAAGATAACAGTTGTGCCAAATGGAAAACAGTTTGTTGATATCGTTCTT 90
Query 188 TCACGGACTCAGCGTCAG-ACACCAACTGTTGTCCACAAGGGTTACAAGATTAACCGTCT 246
|| || |||||||| ||| || ||||||| |||||||| || ||||||| | | ||
Sbjct 91 TCCCGCACTCAGCGCCAGTCCA-AAACTGTTATCCACAAGAGTGACAAGATCAGCAAACT 149
Query 247 CCGTCAG-TTCTACATGA-GAAAGGTTAAG-TACACTCAGA-CCAACTTCCATGCGAAGC 302
|||| || |||||||||| |||| || ||| | ||| || | | ||||| | | ||||
Sbjct 150 CCGT-AGCTTCTACATGATGAAA-GTGAAGCT-CACACA-ATCAAACTTTAACGATAAGC 205
Query 303 TCTCTGCAATCATTGACGAGTTTCCTCGCCTTGAACAAATCC-ATCCTTTCTATG-GTGA 360
||||||| || || |||||||||||||||| || |||||| | ||||| |||| |
Sbjct 206 TCTCTGCCATTATCCACGAGTTTCCTCGCCTCGATGAAATCCAACCCTTT-TATGAAT-C 263
Query 361 TCTTCTTCATGTGCTTTACAATAAAGATCATTACAAGCTTGCT-TTAGGCCAAGTGAACA 419
|||||||||||||||||||||||||||||| |||||||| ||| || || ||||| || |
Sbjct 264 TCTTCTTCATGTGCTTTACAATAAAGATCACTACAAGCTCGCTCTT-GGTCAAGTCAATA 322
Query 420 CCGCCAGGAACTTGATTAGCAAAATCTCCAAGGATTATGTGAAGCTACTCAAGTATGGTG 479
|||||| |||| ||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 323 CCGCCAAGAACAAGATCAGCAAAATCTCCGCGGATTATGTGAAGCTACTCAAGCATGGTG 382
Query 480 ATTCTTTGTACCGCTGCAAGTGTCTTAAG-GTTGCTGCTCTTGGTCGTATGTGCACTGTT 538
|| || ||||||| |||||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 383 ATACTCTGTACCGGTGCAAGTG-CTTAAAAGTGGCTGCTCTTGGGCGTATGTGTACTGTT 441
Query 539 TTGAA-GCGAATCACTCCTAGTTTGGCTTATCTCGAGCAGATCAGGCAGCACATGGCTAG 597
|||| | |||| |||||||||||||||||| |||||| | ||||| ||| |||| ||
Sbjct 442 ATGAAAG-GAATTGGTCCTAGTTTGGCTTATCTTGAGCAGGTTAGGCAACACTTGGCGAG 500
Query 598 GCTTCCTTCCATCGATCCTAACACTCGTACTGTCTTGATTTGTGGTTACCCTAATGTTGG 657
||||||||| || ||||| |||||||| ||| ||||||| ||||| | |||||||| ||
Sbjct 501 GCTTCCTTCGATTGATCCAAACACTCGAACTCTCTTGATCTGTGGATGTCCTAATGTGGG 560
Query 658 CAAGAGTTCTTTTATGAACAAGGTCACCAGAGCTGATGTTGACGTCCAGCCTTATGCTTT 717
|||||||||||||||||||| || || ||||||||||| || || ||||| ||||||||
Sbjct 561 AAAGAGTTCTTTTATGAACAAAGTTACAAGAGCTGATGTGGATGTTCAGCCATATGCTTT 620
Query 718 CACCACCAAATCCCTCTTTGTTGGTCATACTGATTACAAGTATCTCAGGTACCAAGTCAT 777
||| || ||||| |||||| ||||||||||||||||||||| | | ||||| || || ||
Sbjct 621 CACTACAAAATCACTCTTTCTTGGTCATACTGATTACAAGTGTTTGAGGTATCAGGTGAT 680
Query 778 TGATACCCCCGGGATTTTGGATAGGCCCTTTGAGGACCGCAACATCATTGAAATGTGCAG 837
|||||| || ||| ||||||||||| |||| ||||| || |||||||||||||| ||
Sbjct 681 TGATACACCGGGGCTTTTGGATAGGGAAATTGAAGACCGTAATATCATTGAAATGTGTAG 740
Query 838 TATCACTGCCTTGGCCCATCTTCGAGCTGCTGTTTTGTTCTTTCTCGACATTTCTGGATC 897
|||||| || ||||| ||||||||||||||||||||||||||||| || ||||| || ||
Sbjct 741 TATCACCGCATTGGCTCATCTTCGAGCTGCTGTTTTGTTCTTTCTTGATATTTCGGGTTC 800
Query 898 ATGTGGTTACACTATTGCTCAGCAGGCTGCTCTTTTCCACAGCATCAAGTCCCTCTTTAT 957
||||||||||| ||||||||||||||| ||||||| |||| ||| ||||| | || |
Sbjct 801 TTGTGGTTACACCATTGCTCAGCAGGCTTCTCTTTTTCACAACATAAAGTCTGTGTTCAA 860
Query 958 GAACAAACCCTTGGTCATTGTCTGCAACAAGACTGATTTGATGCCCATGGAAAACATCTC 1017
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 861 GAACAAACCGTTGGTGATTGTCTGCAACAAGACTGATTTGATGCCTATGGAGAACTTATC 920
Query 1018 TGAAGAAGATCGGAAGCTGATTGAAGAGATGAA-GTCTGAAGCTATGAAGACTGCAATGG 1076
||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 921 TGAAGAAGACCGGAAGCTGATTGAAGAGATGAAAGA-TGAAGCTATGAAGACTGCCATGG 979
Query 1077 GAGCAAG-TGAAGAA-CAAGTGCTTTTGAAGATGAGCACTCTGACAGACGAAGGTGTCAT 1134
||| ||| |||||| || ||||||||||||||||| ||| |||| || |||||||| ||
Sbjct 980 GAG-AAGATGAAGATGCA-GTGCTTTTGAAGATGAGTACTTTGACTGAAGAAGGTGTGAT 1037
Query 1135 GTCTGTGAAGAATGCCGCATGTGAGAGGCTGTTAGATCAAAGGGTAGAGGCCAAGATGAA 1194
| | |||| |||||| || ||| |||||||||||||||| ||||||| ||| ||||||||
Sbjct 1038 GACAGTGAGGAATGCTGCTTGTCAGAGGCTGTTAGATCAGAGGGTAGCGGCGAAGATGAA 1097
Query 1195 ATCCAAAAAGATCAACGACCACCTAAACAGGTTCCATGTGGCTATCCCGAAGCCTCGTGA 1254
||| ||||||||| |||||| | |||||||| |||||||| || |||||| |||||||
Sbjct 1098 ATCGAAAAAGATCGTTGACCACTTGAACAGGTTTCATGTGGCGATGCCGAAGGCTCGTGA 1157
Query 1255 T-AGCATAGAAAGGCTCCCTTGCATACCTCAGGTTGTTCTGGAGGCTAAAGCTAAGGAAG 1313
| | || ||| |||||||||| ||||||||||| | || ||| || ||| || |
Sbjct 1158 TGACCA-AGATAGGCTCCCTTTTATACCTCAGGTAG--CTA-AGG--AA-GCT--GGT-G 1207
Query 1314 CAGCTGCAATGGAGAAACGAAAGACTGAGAAAGATTTGGAAGAGGAGAATGGTGGAGCTG 1373
| || |||||| |||||||| ||||| ||||||||||| || |||||||||||||
Sbjct 1208 AA-----AA-GGAGAAGCGAAAGACCGAGAAGGATTTGGAAGATGAAAATGGTGGAGCTG 1261
Query 1374 GAGTTTATTCTGCTAGTCTAAAGAAGAACTACATCTTG-C-AACATGATGAATGGAAGGA 1431
| |||||||||||||||||||||||||||||||| ||| | || | || |||||||||||
Sbjct 1262 GGGTTTATTCTGCTAGTCTAAAGAAGAACTACATTTTGGCTAA-A-GAAGAATGGAAGGA 1319
Query 1432 AGACATTATGCCTGAGAT-TCTCGATGGTCACAATGTGGCTGACTTCATTGATCCAGACA 1490
|||||| || |||||||| | | |||||||||||||| ||||| || ||||| ||||||
Sbjct 1320 AGACATAATACCTGAGATCTGT-GATGGTCACAATGTTGCTGATTTTGTTGATTCAGACA 1378
Query 1491 TTTTGCAGAGGCTTGCAG-AGTTGG-AACGTGAAGAAGGGATAAGGGAGGCTGGGGTTGA 1548
||||| | ||||||| || ||||| || |||||||| | | ||| |||| | || ||
Sbjct 1379 TTTTGAATAGGCTTG-AGGAGTTGACAA-GTGAAGAAAGTCTCAGGAAGGCAGAGGAAGA 1436
Query 1549 AGAAGC---TGATATGGAGATGGATATT-GAAAAGCTTTCGGATGAGCAGCTGAAGCA-G 1603
||||| || | | ||||| || | ||||| |||||||| || || |||| | |
Sbjct 1437 AGAAGAAAATGGTTTTGAGATCGA-AGGAGAAAAACTTTCGGA-GA--AGGAGAAGAATG 1492
Query 1604 CTTT--CTGAGATTAGAAAGAAGAAAGCTATACTCATTAAAAACCAC-AGGCTCAAGAAG 1660
||| ||| ||| | |||||||||||| | || ||| || | | || || ||||||
Sbjct 1493 ATTTGGCTGCTATTCGTAAGAAGAAAGCTTTGCTTATTCAAGAG-AGTAGACTTAAGAAG 1551
Query 1661 ACCGTTGCACAGAACCGATCAACTGTTCCAAGAAAGTTTGATAAGGACAAGAAGTACACA 1720
| | |||||| ||| || || |||||||||||||||||| || || ||||||| |||
Sbjct 1552 AGCAATGCACAAAACAGAGCAGCTGTTCCAAGAAAGTTTGGCAAAGATAAGAAGTTTACA 1611
Query 1721 AC-AAAGAGAATGGGTAGGGAGTTATCAGCTATGGGACTTGATCCGTCTTCTGCAATGGA 1779
| ||| ||||||||||| ||||||||| || |||| ||||||||||||||||| || |
Sbjct 1612 AGGAAA-AGAATGGGTAGAGAGTTATCATCTCTGGGTCTTGATCCGTCTTCTGCTTTGAA 1670
Query 1780 CCGTGCAAGAAGCAAGTCTAGAGGGAGGAAGAGGGATCGATCA-GAAGATGCGGGTA-AT 1837
|| ||||||||||||||||||||| || |||||||| | | | || | | | ||| |
Sbjct 1671 CCATGCAAGAAGCAAGTCTAGAGGAAGAAAGAGGGAAAGGT-ATGATGGTTTGAGTATA- 1728
Query 1838 GATGCTATGGACGTTGATG--A-TGA-GCAACAGTCGAACA-A-GAAGCAGC-GTGT--G 1888
||||||||||| || |||| | ||| | | || | |||| | |||| || |||| |
Sbjct 1729 GATGCTATGGATGTGGATGTGAATGATG-ATGAG-C-AACAGAAGAAGAAGATGTGTCTG 1785
Query 1889 AGATCAA-AGTCTAGAGCTATGTCGATATCAAGATCTCAGTCGAGGCCTCCTGCACATGA 1947
||||| | | || ||| || |||| | ||||||||| ||| ||||| || ||||||
Sbjct 1786 AGATCCAGA-TCAAGATCTTTGTCAAGATCAAGATCAGTGTCAAGGCCACC---ACATGA 1841
Query 1948 AGTTGTGCCTGGTGAAGGATTCAAAGACTCTACTCAGAAG-TTATCGGCCATTAAGATTA 2006
||| | ||||||||||| |||||||| ||| | |||||| ||| ||| |||||||||
Sbjct 1842 GGTTTTACCTGGTGAAGGCTTCAAAGATTCTTCACAGAAGATTAA-GGCAATTAAGATTG 1900
Query 2007 G-CAATAAATCTCACAAAAAGAGAGACAA-GAATGCACGTCGTGGTGAAGCTGACAGAGT 2064
| || |||||||||| |||||||||||| | |||||||||||| ||||| ||||||||
Sbjct 1901 GACAC-AAATCTCACAGAAAGAGAGACAAAGC-TGCACGTCGTGGAGAAGCAGACAGAGT 1958
Query 2065 TATACCAACGCTTAGACCGAAACATTTGTTTTCAGGCAAGAGAGGGAAAGGAAAAA-CCG 2123
||||||| | |||| ||| ||||| ||||||||||| || ||||| || ||||||| ||
Sbjct 1959 TATACCATCTCTTAAACCAAAACACTTGTTTTCAGGGAAAAGAGGCAATGGAAAAAACCA 2018
Query 2124 ACAGGCGTTGA 2134
| |||||||||
Sbjct 2019 A-AGGCGTTGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90197700160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5