BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50930.1
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474213 jgi|Araly1|474213|fgenesh2_kg.1__4167__AT1G50930.1 1230 0.0
> Ahg474213 jgi|Araly1|474213|fgenesh2_kg.1__4167__AT1G50930.1
Length=781
Score = 1230 bits (666), Expect = 0.0
Identities = 748/787 (95%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 1 GCCAACAAAAGTCTCAACTTTACATTACACATATTTCTTTTGAATTCCCCCAAACACTTC 60
|||||||||||||||||||| ||| ||||||| ||| ||||| |||||||||||||||||
Sbjct 1 GCCAACAAAAGTCTCAACTTAACA-TACACATTTTTTTTTTGCATTCCCCCAAACACTTC 59
Query 61 AATGGAGAACTCCGTAAACAACTGCGTGAGACA-AAGAGTATTCTCCAATCACCAAATCA 119
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 60 AATGGAGAACTCCGTAAACAACTGCGTGAGACAGAA-AGTATTCTCCAATCACCAAATCA 118
Query 120 GAATGATACACGAAGAAGAAGATCATGAAGAGAGTAGTTGGATAGTCTACTTTGAAGATA 179
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 AAACGATACACGAAGAAGAAGATCAAGAAGAGAGTAGTTGGATAGTCTACTTTGAAGATA 178
Query 180 TTGATCATGATGATGAAATGGTAGAAACTGAAGGAGAAATGACTCATTACTACGATAATG 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 179 TTGATCATGATGATGAAATGGTAGAAACTGAAGGAGAAATGACTCATTATTACGATAATG 238
Query 240 ATTCATCGATGATCTCAGACGCTGCATCTCCTGTCCATACCACAAAGATTAATAATGTTG 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 ATTCATCGATGATCTCAGACGCTGCATCTCCTGTCCACACCACAAAGATTAATAATGTTG 298
Query 300 TTCGTCGAAAGGCTAATAACATTAATACAAACCCTAAAAAGCGACGAATCATTCATCAAC 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 299 TTCGTCGAAAGGCTAATAACATTAATACAAACCCTAAAAAGAGACGAATCATTCATCAGC 358
Query 360 ACaaagaagaagaagaagaagaactacaaaaaggagaagaagaagaagaagatgaagaag 419
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 359 ACAAAGAAGAAGAAGAAGAC---CTACAAAAAGGAGAGGAAGAAGAAGAAGATGAGGAAG 415
Query 420 aCACTGCTTCTTCTCCTTCTAATAAAACCAAGATTTTTAGTGTCTTGGACCATGCTAATG 479
| || ||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 416 ATACAGCTTCTTCTCCTTCTAATAAAACCAAGGTTTTTAGTGTCTTAGATGGTGCTAATG 475
Query 480 ATAATACAAGATATGGAAAAACCATGGACAATGTTACATCCGAGGAAATTGGATGCATAA 539
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 476 ATAATACAAGATATGGAAAATCCATGTACAATGTTACATCCGAGGAAATTGGATGCATAA 535
Query 540 CAGAAACAGGATCAAAGATAAAAGAAATTATGAATGAAGAATTCTCTGCAGAATTGAAGA 599
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 536 CAGACACAGGATCAAAGATAAAAGAAATTATGAACGAAGAATTCTCTGCAGAATTGAAAA 595
Query 600 AGAGAGGACTTTGTGTAGTTCCTTTATCCATGTTATCTAACtttattgcttgatgattct 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 596 AGAGAGGACTTTGTGTAGTTCCTTTATCCATGTTATCTAACCTTATTGCTTGATGATTCT 655
Query 660 tttattttactctctaagttttaactgttattattattttttattcttctgattctttGA 719
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTTATTTTATTTT-TAAGTTTTAACTGTTATTATTATTTTTTATTCTTCTGATTCTTTGA 714
Query 720 TGTAAAATTGTTACTATGATTGATTGACAAGTAAAATGTATAGAAAATCGAATTCTTATT 779
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 715 TGTAAAATTGTTACTATTATTGATTGACAAGTAAAATGTATAGAAAATTGAATTCTTATT 774
Query 780 GAGAGTT 786
|| ||||
Sbjct 775 GAAAGTT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29164031505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5