BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50940.1
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474214 jgi|Araly1|474214|fgenesh2_kg.1__4168__AT1G50940.1 1960 0.0
> Ahg474214 jgi|Araly1|474214|fgenesh2_kg.1__4168__AT1G50940.1
Length=1286
Score = 1960 bits (1061), Expect = 0.0
Identities = 1178/1234 (95%), Gaps = 10/1234 (1%)
Strand=Plus/Plus
Query 55 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAATAAGT 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAACAAGT 60
Query 115 TCGTCGCCTCTAATGCTCCTCGATCTA--T--A--TCCATTTCCATCACCAGTCTCTCTA 168
|||||||||| |||||||||||||||| | | ||||| |||||||||| |||||||
Sbjct 61 TCGTCGCCTCGAATGCTCCTCGATCTATCTCCATCTCCATCTCCATCACCAATCTCTCTC 120
Query 169 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTACAATCAAACCTCAGACAG 228
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTTCAATCAAACCTCAGACAG 180
Query 229 TGAGTACAGTAGTTGCAGCTAATTCATTAGGTGAGAGCTCTTCAATTTCTTTGTTATTGG 288
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 181 TGAGTACAGTAGTTGCAGCTAATTCTTTAGGTGAGAATTCTTCAATTTCTTTGTTATTGG 240
Query 289 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 300
Query 349 TTTCCGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACTCTTTAGCTGAGCCTTGGG 408
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTTCAGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACCCTTTAGCTGAGCCTTGGG 360
Query 409 CTAAATTGGTTGACTTTGTTCGGCAACAAGGAGATTACTCACACATTCTTGCTTCCTCTA 468
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
Sbjct 361 CTAAATTGGTTGACTTTGTTCGTCTACAAGGAGATTACTCTCACATTCTTGCTTCCTCAA 420
Query 469 GTTCATTTGGCAAGAATATATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 528
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCGTTTGGCAAGAATTTATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 480
Query 529 CTGATGTTGTCAAAATCTTAGGATCTGACCAGTTTATCAGGCCTATTTATGCGGGAAACG 588
| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 481 CCGATGTTGTCAAAATCTTAGGATCCGATCAGTTTGTCAGGCCTATTTATGCGGGAAACG 540
Query 589 CTTTGTGTACAGTTCGTTATACTGGTGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 648
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CTTTGTGTACAGTTCGTTATACTGGGGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 600
Query 649 CTTTTCCTGTCACCCCGATTACAGCAAACTCAGAGTCAAAGAAAGCTACTGTCTCTCAGA 708
||||||||||| |||| ||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 601 CTTTTCCTGTCGCCCCAATTACAGCAGACTCCGAGTCAAAGAAAGCTACTATCTCTCAGA 660
Query 709 TTGATCTCTCAAATTTTGAAGACGACTCTGTCAGCAAATCTAGATATGTGGGACGTTCAA 768
||||||||||||| || |||| ||||||||||| |||||||||||||||||||||||||
Sbjct 661 TTGATCTCTCAAACTTCAAAGAAGACTCTGTCAGTAAATCTAGATATGTGGGACGTTCAA 720
Query 769 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCACGTGTTGTGATCACTGGTGGAAGGG 828
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 721 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCTCGCGTTGTGATCACTGGTGGAAGGG 780
Query 829 CGTTGAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 888
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGCTAAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 840
Query 889 CAGTGGGCGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 948
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CAGTTGGTGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 900
Query 949 GGCAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 1008
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 960
Query 1009 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1020
Query 1069 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTCGTTGGAGATCTTTTCGAGGTGATAC 1128
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1021 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTTGTTGGAGATCTTTTCGAAGTGATAC 1080
Query 1129 CGGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGACCCCGAGAGACCGAAACTCGTCT 1188
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 CCGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGAAGCCGAGAGACCGAAACTCGTCT 1140
Query 1189 CTGTTTATCATCTCTTAAGCTCTCTGTATTTTGAGGTGCAGACCATAGTAAGTAGTGTAT 1248
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1141 CTGTTTATCATCTCTTAAGCTCG--GTATTTTCAGGTGCAGACCATAGTAAGTAGTGTAT 1198
Query 1249 ATAGCAAAACTGTAATAAAAAA--CGGTCTGGAG 1280
|||||||||||||||||||||| ||||||||||
Sbjct 1199 ATAGCAAAACTGTAATAAAAAAAACGGTCTGGAG 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51917003935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5