BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50940.1 Length=1389 Score E Sequences producing significant alignments: (Bits) Value Ahg474214 jgi|Araly1|474214|fgenesh2_kg.1__4168__AT1G50940.1 1960 0.0 > Ahg474214 jgi|Araly1|474214|fgenesh2_kg.1__4168__AT1G50940.1 Length=1286 Score = 1960 bits (1061), Expect = 0.0 Identities = 1178/1234 (95%), Gaps = 10/1234 (1%) Strand=Plus/Plus Query 55 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAATAAGT 114 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 AATCAGAAGAGAAAACGATGACGAGAACTGTTCTACTGAGAGCTCTGACGAAGAACAAGT 60 Query 115 TCGTCGCCTCTAATGCTCCTCGATCTA--T--A--TCCATTTCCATCACCAGTCTCTCTA 168 |||||||||| |||||||||||||||| | | ||||| |||||||||| ||||||| Sbjct 61 TCGTCGCCTCGAATGCTCCTCGATCTATCTCCATCTCCATCTCCATCACCAATCTCTCTC 120 Query 169 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTACAATCAAACCTCAGACAG 228 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 121 GATGCATTAGCACTCTGATTCTAGCAGAACATGAGAGTGGTTCAATCAAACCTCAGACAG 180 Query 229 TGAGTACAGTAGTTGCAGCTAATTCATTAGGTGAGAGCTCTTCAATTTCTTTGTTATTGG 288 ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 181 TGAGTACAGTAGTTGCAGCTAATTCTTTAGGTGAGAATTCTTCAATTTCTTTGTTATTGG 240 Query 289 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTGGTTCTGGTTCTTCTCTTCAAGAAGCTGCTTCTCAAGCTGCCTCTTGTCATCCTTCTG 300 Query 349 TTTCCGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACTCTTTAGCTGAGCCTTGGG 408 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 301 TTTCAGAGGTACTTGTTGCTGATTCTGATAAATTTGAGTACCCTTTAGCTGAGCCTTGGG 360 Query 409 CTAAATTGGTTGACTTTGTTCGGCAACAAGGAGATTACTCACACATTCTTGCTTCCTCTA 468 |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| | Sbjct 361 CTAAATTGGTTGACTTTGTTCGTCTACAAGGAGATTACTCTCACATTCTTGCTTCCTCAA 420 Query 469 GTTCATTTGGCAAGAATATATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 528 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTCGTTTGGCAAGAATTTATTACCCCGTGTCGCTGCTCTTTTAGATGTTTCTCCTATTA 480 Query 529 CTGATGTTGTCAAAATCTTAGGATCTGACCAGTTTATCAGGCCTATTTATGCGGGAAACG 588 | ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| Sbjct 481 CCGATGTTGTCAAAATCTTAGGATCCGATCAGTTTGTCAGGCCTATTTATGCGGGAAACG 540 Query 589 CTTTGTGTACAGTTCGTTATACTGGTGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 648 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 541 CTTTGTGTACAGTTCGTTATACTGGGGCGGGTCCTTGTATGTTGACTATTAGATCTACAT 600 Query 649 CTTTTCCTGTCACCCCGATTACAGCAAACTCAGAGTCAAAGAAAGCTACTGTCTCTCAGA 708 ||||||||||| |||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 601 CTTTTCCTGTCGCCCCAATTACAGCAGACTCCGAGTCAAAGAAAGCTACTATCTCTCAGA 660 Query 709 TTGATCTCTCAAATTTTGAAGACGACTCTGTCAGCAAATCTAGATATGTGGGACGTTCAA 768 ||||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||| Sbjct 661 TTGATCTCTCAAACTTCAAAGAAGACTCTGTCAGTAAATCTAGATATGTGGGACGTTCAA 720 Query 769 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCACGTGTTGTGATCACTGGTGGAAGGG 828 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 721 CTCAGGATACAGAACGGCCTGATCTTGGAAGTGCTCGCGTTGTGATCACTGGTGGAAGGG 780 Query 829 CGTTGAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 888 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CGCTAAAGAGTGTTGAGAATTTTAAAATGATCGAAAAGCTTGCAGAAAAACTTGGTGGAG 840 Query 889 CAGTGGGCGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 948 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CAGTTGGTGCTACTCGTGCTGCTGTTGATGCTGGATATGTTCCTAATGATCTTCAGGTGG 900 Query 949 GGCAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 1008 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GACAAACAGGTAAAATAGTAGCACCAGAGCTATACATGGCATTTGGTGTTTCAGGAGCCA 960 Query 1009 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1068 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTCAACACTTAGCTGGAATTAAGGATTCTAAGGTGATTGTTGCGGTTAATAAAGACGCCG 1020 Query 1069 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTCGTTGGAGATCTTTTCGAGGTGATAC 1128 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1021 ATGCACCTATTTTCCAGGTAGCTGATTATGGACTTGTTGGAGATCTTTTCGAAGTGATAC 1080 Query 1129 CGGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGACCCCGAGAGACCGAAACTCGTCT 1188 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1081 CCGAGTTGCTGGAGAAGCTTCCAGAAAAGAAATGAGAAGCCGAGAGACCGAAACTCGTCT 1140 Query 1189 CTGTTTATCATCTCTTAAGCTCTCTGTATTTTGAGGTGCAGACCATAGTAAGTAGTGTAT 1248 |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1141 CTGTTTATCATCTCTTAAGCTCG--GTATTTTCAGGTGCAGACCATAGTAAGTAGTGTAT 1198 Query 1249 ATAGCAAAACTGTAATAAAAAA--CGGTCTGGAG 1280 |||||||||||||||||||||| |||||||||| Sbjct 1199 ATAGCAAAACTGTAATAAAAAAAACGGTCTGGAG 1232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51917003935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5