BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G50950.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1 2636 0.0
Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1 1212 0.0
> Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1
Length=1776
Score = 2636 bits (1427), Expect = 0.0
Identities = 1675/1792 (93%), Gaps = 28/1792 (2%)
Strand=Plus/Plus
Query 1 TTTTCGTGTAGAGTTCCCATAGTTAAGCAAAGTGGGATCACGACGGCTTTAAGAACAAAA 60
|||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 TTTTTGTGAAGAGTTCCAATAGTTAAGGAAAGTGGGATCACGACGGCTTTAAGAACAGAA 60
Query 61 TCCTA-GATACAGAGATAGAGAAAGAGAGCTCATTGTCAAGATCTG--------tttttt 111
||| | || | | ||||||||| |||||||||| | |||||||||| ||||||
Sbjct 61 TCCGACGAGATACAGATAGAGAGAGAGAGCTCAATCTCAAGATCTGTTTTTTTTTTTTTT 120
Query 112 tCTT-TGTTAGAATCCTTTCTTCTTTGTTACAGCCATGGTTTCAACCTCCAAGATCAAGT 170
| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 121 TTTTCTGTTAGAATCCTTTCTTCTTTGTCACAGCCATGGTTTCAACCACCAAGATCAAGT 180
Query 171 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACTGAAGCATCTCTCTCTGGTGCTG 230
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACAGAAGCATCTCTCTCTGGTGCTG 240
Query 231 GATTATCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 290
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTGTCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 300
Query 291 ATTTGGCTATTAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 350
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTGGCAATCAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 360
Query 351 TAAACATTGATTTTAACATCAGCTTTCCTGCCCTCTCATGTGAATTCGCATCAGTTGACG 410
|| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 361 TAGACATTGATTTCAACATCAGCTTTCCTGCCCTCTCATGTGAATTTGCATCAGTTGATG 420
Query 411 TGAGTGACGTGTTTGGAACTCACAGGTTAAATATATCGAAAACGATTAGAAAAGTTCCAA 470
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 421 TGAGTGACGTGTTTGGAACTCACAGGTTGAATATAACGAAAACGATTAGAAAAGTTCCAA 480
Query 471 TTGATCCGCATTTAAGAGCCACTGCTGAGGAATTTCACTCCACCT-CTGATTTACATCTC 529
|||||||||||||||||||||||| || |||||||||||||| || | || |||||||||
Sbjct 481 TTGATCCGCATTTAAGAGCCACTGGTGCGGAATTTCACTCCAGCTCCGGA-TTACATCTC 539
Query 530 ATCAACCATGGAGACGAAGATCATGGTGACAATAGTACTTATGCGGATATACCCTTAACT 589
|||||||||||||| ||||| |||| |||||||||||||||||| |||||||| ||||||
Sbjct 540 ATCAACCATGGAGAGGAAGAGCATGATGACAATAGTACTTATGCTGATATACCATTAACT 599
Query 590 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 659
Query 650 CCATGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGTGAAAGCATCTCAAATAACG 709
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 CCGTGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGAGAAAGCATCTCAAATAACG 719
Query 710 AGAGAAAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 769
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAGAGAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 779
Query 770 GAAGAACCTACCCTATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTC 829
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 780 GAAGAACCTACTCTATGTAAGAGCAATCATATACAAGGCTACCCATCTATTCGAATTTTC 839
Query 830 CGCAGAGGCAGTGGTCTTAGGGAGGACCATGGGAACCACGAACATGAATCTTACTATGGA 889
|||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 CGCAAAGGCAGTGATCTTAGGGAGGACCATGGGAATCACGAACATGAATCTTACTATGGA 899
Query 890 GATCGGGACACAGATAGCTTAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAG 949
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 900 GATCGGGACACAGATAGCCTAGTCAAGATGGTAGAAGAACTGCTCAAACCTATAAAAAAG 959
Query 950 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTTTTAAAAAG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTATTAAAAAG 1019
Query 1010 GCACCAGTTAGTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGC 1069
||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1020 GCACCGGTTAGTGGAGGTTGTAGAATTGAAGGATATGTCCGTGCAAAGAAGGTTCCCGGC 1079
Query 1070 GAACTTGTAATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1129
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAACTTGTAATCTCGGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1139
Query 1130 TCTCATATTGTTACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTGTGGACTGAT 1189
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1140 TCGCATATTGTTACCCATCTCTCATTTGGTACAATGGTTTCAGAAAGGTTATGGACTGAT 1199
Query 1190 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTC 1249
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 1200 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCCATGACAGGCTGAATGGAAAATCTTTC 1259
Query 1250 ATCAATGAACGACAATTGGATGCTAATGTTACAATCGAACACTACTTGCAAATAATCAAA 1309
|| ||| ||||| |||| || ||||||||||| || |||||||||||||||||| |||||
Sbjct 1260 ATAAATCAACGAAAATTTGAAGCTAATGTTACCATAGAACACTACTTGCAAATAGTCAAA 1319
Query 1310 ACAGAGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATAT 1369
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 ACAGAGGTCATTTCAAGAAGATCCGGTAAAGAACACTCATTGATTGAGGAATATGAATAT 1379
Query 1370 ACGGCTCATAGCAGCGTAGCTCGTAGTTACCATTATCCTGAAGCAAAGTTTCACTTTGAG 1429
|||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1380 ACGGCTCATAGCAGCGTATCTCATAGTTACCATTATCCCGAAGCAAAGTTTCACTTTGAG 1439
Query 1430 CTCTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACA 1489
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 CTCTCTCCAATGCAGGTCTTAATAAGCGAGAATCCAAAGTCATTCTCGCACTTCATCACA 1499
Query 1490 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1559
Query 1550 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATA 1609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATG 1619
Query 1610 AGTGAGGTTAGATGTTAGTTTTTCCAATTTT-TTAAGATCTACAAAACCATAAAGAGACA 1668
|||||||||||||||||||||||| | |||| ||||||||||||| ||||||
Sbjct 1620 AGTGAGGTTAGATGTTAGTTTTTC-AGTTTTATTAAGATCTACAATACCATA-------- 1670
Query 1669 CCTCAATTTCTTATATAACTTGTAGACCTTGTTTATTTTCGAATAGCCGTTTGAAAGAGA 1728
| ||| ||| ||| |||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 1671 --T---TTT-TTACATACCTTGTAGACCCTGTTTATTTTCGAATAGCAGTTCGAAAGAGA 1724
Query 1729 GAATAGAGTAACAATCTTCTTTGCAGCGTCTTGACTTCTTCTTGATTCTTTG 1780
||||| || |||||| || |||||||| |||||||||| |||||||||||||
Sbjct 1725 GAATAAAGAAACAATTTTATTTGCAGCATCTTGACTTCCTCTTGATTCTTTG 1776
> Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1
Length=1750
Score = 1212 bits (656), Expect = 0.0
Identities = 1224/1492 (82%), Gaps = 63/1492 (4%)
Strand=Plus/Plus
Query 141 CAGCCATGGTTTCAACCTCCAAGA-TCAAGTCCGTTGATTTCTACAGGAAAATCCCAAGA 199
|||||||||||||| || |||| | ||||||||||||||||||||||||||||||| |||
Sbjct 135 CAGCCATGGTTTCATCCACCAA-ACTCAAGTCCGTTGATTTCTACAGGAAAATCCCGAGA 193
Query 200 GATTTGACTGAAGCATCTCTCTCTGGTGCTGGATTATCCATTGTAGCTGC-C-CTTGCTA 257
|||||||| || || ||||| || || ||||| ||||| ||||||||||| | ||| ||
Sbjct 194 GATTTGACGGAGGCGTCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTT--TA 251
Query 258 TGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGCTA-TTAACACTAGCACATCT 316
|| |||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 252 TGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGG-AAGTTAACACTACCACAGCT 310
Query 317 GTAATAGTTGACAAAAGCTCTGATGGGGACTTCTTAAACATTGATTTTAACATCAGCTTT 376
|||||||||||||| ||| |||||| ||||||||| ||||||||| |||||||| |||
Sbjct 311 GTAATAGTTGACAAGAGCAGTGATGGAGACTTCTTACGCATTGATTTCAACATCAGTTTT 370
Query 377 CCTGCCCTCTCATGTGAATTCGCATCAGTTGACGTGAGTGACGTGTTTGGAACTCACAGG 436
|||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | |||
Sbjct 371 CCTGCCCTTTCATGTGAATTTGCATCTGTTGATGTGAGCGACGTGTTGGGAACAAATAGG 430
Query 437 TTAAATATATCGAAAACGATTAGAAAAG-TTCCAATTGATCCGCATTTAAGAG-CCA-CT 493
|| |||||| | ||||| ||| | ||| |||||||||| ||||||||||| | ||| |
Sbjct 431 TTGAATATAACAAAAACAATTCG-CAAGTTTCCAATTGACCCGCATTTAAG-GTCCACCG 488
Query 494 GCTG-AGGAATTTCACTC-CACCTCTG-ATTTACATCTCATCAACCATGGAGACGAAGAT 550
|| | | ||||| ||||| ||| || | |||||| ||| ||||||||||| ||| |
Sbjct 489 GC-GCA-GAATTCCACTCTGGCCT-TGCA-TTACATAACATTAACCATGGAGAAGAA-A- 542
Query 551 C-ATGGTGACAATAGTACTTATGCG-GATATACCCTTAACTGGTGCT-GCTTTTG-AGAA 606
| | || | | | | || ||| | | |||||| ||||| ||||| | ||||| || |
Sbjct 543 CTAAGG-AAGAGT-TTCCTGATG-GTGCTATACCATTAACCAGTGCTAG-TTTTGAAGCA 598
Query 607 GTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCGCCATGGTGCTACTGGAG 666
| | ||||||| |||| ||| |||||||| || || |||| |||||||||||||||||
Sbjct 599 CTAT-CACATCACTTTCCAATATTGGTTGTCAACTTCAATGCACCATGGTGCTACTGGAG 657
Query 667 TAATCGCCTGAAACCAT-CTTGGGTGAAAGCATCTCAA-ATAACGAGAGAAAGATATAAT 724
|||||| |||||||| | | |||| |||||| || || |||| | | |||||||| ||
Sbjct 658 TAATCGTCTGAAACC-TGCATGGGAAAAAGCAGCT-AATATAATAAAACAAAGATATGAT 715
Query 725 CCTGGAA-CTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACAGAAGAACCTACCCT 783
||| ||| |||||| |||||||||| |||||| ||||||||||| ||||||||| | ||
Sbjct 716 CCT-GAAGCTGATGGTCGTGTTCTTCTAGGAAACGTTGATTGCACGGAAGAACCTGCGCT 774
Query 784 ATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTCCGCAGAGGCAGTGG 843
||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 775 ATGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGA 834
Query 844 TCTTAGGGAGGACCATGGGA-ACCACGAACATGAATCTTACTATGGAGATCGGGACACAG 902
||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 835 CCTTAGAGAGGACCAT-GGACACCACGAACATGAATCTTACTATGGAGATCGGGACACGG 893
Query 903 ATAGCT-TAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAGGAGGA-TCATAA 960
|||| | |||| ||||||||||| | |||| || |||||| | |||| | ||| ||
Sbjct 894 ATAG-TATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAG-ACTCACAA 951
Query 961 GTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCA-ACTTTTAAAAAGGCACCAGTTA 1019
| | ||||||||||||||||| || || | | | | | | ||||||||||||||||||
Sbjct 952 GGTAGCTTTGGATGGTAAATCCAATGATACCG-TAAAGAATCTTAAAAAGGCACCAGTTA 1010
Query 1020 GTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGCGAACTT-GTA 1078
||||||||| || ||||||| ||||| || | |||||||||||| || ||| | ||
Sbjct 1011 CAGGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGA-AACCTCGTT 1069
Query 1079 ATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATGTCTCATATT 1138
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||
Sbjct 1070 ATCTCAGCTCATTCAGGAGCTCATTCATTCGATTCTTCTCAAATGAACATGTCGCATGTT 1129
Query 1139 GT-TACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTG-TGGACTGATATGAAAC 1196
|| | ||||||| | ||||| | ||| |||| |||||| || || ||||||||||
Sbjct 1130 GTGT-CCCATCTTTCGTTTGGGAGGATGATTTCTCCTAGGTTGCTG-ACCGATATGAAAC 1187
Query 1197 GATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTCATCAATG 1256
| || |||| |||||||||| |||| |||| |||||| ||||||| | ||||| |||
Sbjct 1188 GGTTGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATC 1247
Query 1257 AACGACAA-TT-GGATGCTAATGTTACAATCGAACACTAC-TTGCAAATAATCAAAACAG 1313
||| | | || || ||| ||||| || |||||||||||| || |||||| |||||||||
Sbjct 1248 AAC-ATGAGTTTGG-TGCCAATGTCACTATCGAACACTACCTT-CAAATAGTCAAAACAG 1304
Query 1314 AGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATATACGG 1373
|||||||| ||||||||||||| |||||||| ||| |||| |||||||||||||| || |
Sbjct 1305 AGGTCATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCG 1364
Query 1374 CTCATAGCAGCGTAGCTC-GTAGTTACCA-TTATCCTGAAGCAAAGTTTCACTTTGAGCT 1431
|||| |||||||| |||| | | |||| | ||| || | || |||||||||||||||||
Sbjct 1365 CTCACAGCAGCGTGGCTCAG-ACTTACTACTTACCC-GTTGCGAAGTTTCACTTTGAGCT 1422
Query 1432 CTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACAAA 1491
|||||| |||||| || |||||| ||| ||||||||||| ||||| ||||||||||||||
Sbjct 1423 CTCTCCCATGCAGATCTTAATAACCGAAAACCCAAAGTCCTTCTCACACTTCATCACAAA 1482
Query 1492 TGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTTCA 1551
| | || ||||| || || |||||||| ||||| || |||||||| ||||| || ||||
Sbjct 1483 TCTGTGTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTTGATTCGAT-TTTCC 1541
Query 1552 A-AACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATC 1602
| || ||||| ||| || | |||||| ||||||| |||||||||||||||||
Sbjct 1542 ACAATACAGTAAGACTGATAAAAAAGGTCGAACTTGGGAAAAACATTTGATC 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5