BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G50950.1 Length=1782 Score E Sequences producing significant alignments: (Bits) Value Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1 2636 0.0 Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1 1212 0.0 > Ahg474215 jgi|Araly1|474215|fgenesh2_kg.1__4169__AT1G50950.1 Length=1776 Score = 2636 bits (1427), Expect = 0.0 Identities = 1675/1792 (93%), Gaps = 28/1792 (2%) Strand=Plus/Plus Query 1 TTTTCGTGTAGAGTTCCCATAGTTAAGCAAAGTGGGATCACGACGGCTTTAAGAACAAAA 60 |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| || Sbjct 1 TTTTTGTGAAGAGTTCCAATAGTTAAGGAAAGTGGGATCACGACGGCTTTAAGAACAGAA 60 Query 61 TCCTA-GATACAGAGATAGAGAAAGAGAGCTCATTGTCAAGATCTG--------tttttt 111 ||| | || | | ||||||||| |||||||||| | |||||||||| |||||| Sbjct 61 TCCGACGAGATACAGATAGAGAGAGAGAGCTCAATCTCAAGATCTGTTTTTTTTTTTTTT 120 Query 112 tCTT-TGTTAGAATCCTTTCTTCTTTGTTACAGCCATGGTTTCAACCTCCAAGATCAAGT 170 | || ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 121 TTTTCTGTTAGAATCCTTTCTTCTTTGTCACAGCCATGGTTTCAACCACCAAGATCAAGT 180 Query 171 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACTGAAGCATCTCTCTCTGGTGCTG 230 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 CCGTTGATTTCTACAGGAAAATCCCAAGAGATTTGACAGAAGCATCTCTCTCTGGTGCTG 240 Query 231 GATTATCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 290 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GTTTGTCCATTGTAGCTGCCCTTGCTATGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTT 300 Query 291 ATTTGGCTATTAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 350 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATTTGGCAATCAACACTAGCACATCTGTAATAGTTGACAAAAGCTCTGATGGGGACTTCT 360 Query 351 TAAACATTGATTTTAACATCAGCTTTCCTGCCCTCTCATGTGAATTCGCATCAGTTGACG 410 || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 361 TAGACATTGATTTCAACATCAGCTTTCCTGCCCTCTCATGTGAATTTGCATCAGTTGATG 420 Query 411 TGAGTGACGTGTTTGGAACTCACAGGTTAAATATATCGAAAACGATTAGAAAAGTTCCAA 470 |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 421 TGAGTGACGTGTTTGGAACTCACAGGTTGAATATAACGAAAACGATTAGAAAAGTTCCAA 480 Query 471 TTGATCCGCATTTAAGAGCCACTGCTGAGGAATTTCACTCCACCT-CTGATTTACATCTC 529 |||||||||||||||||||||||| || |||||||||||||| || | || ||||||||| Sbjct 481 TTGATCCGCATTTAAGAGCCACTGGTGCGGAATTTCACTCCAGCTCCGGA-TTACATCTC 539 Query 530 ATCAACCATGGAGACGAAGATCATGGTGACAATAGTACTTATGCGGATATACCCTTAACT 589 |||||||||||||| ||||| |||| |||||||||||||||||| |||||||| |||||| Sbjct 540 ATCAACCATGGAGAGGAAGAGCATGATGACAATAGTACTTATGCTGATATACCATTAACT 599 Query 590 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GGTGCTGCTTTTGAGAAGTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCG 659 Query 650 CCATGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGTGAAAGCATCTCAAATAACG 709 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 660 CCGTGGTGCTACTGGAGTAATCGCCTGAAACCATCTTGGGAGAAAGCATCTCAAATAACG 719 Query 710 AGAGAAAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 769 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGAGAGAGATATAATCCTGGAACTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACA 779 Query 770 GAAGAACCTACCCTATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTC 829 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 780 GAAGAACCTACTCTATGTAAGAGCAATCATATACAAGGCTACCCATCTATTCGAATTTTC 839 Query 830 CGCAGAGGCAGTGGTCTTAGGGAGGACCATGGGAACCACGAACATGAATCTTACTATGGA 889 |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 840 CGCAAAGGCAGTGATCTTAGGGAGGACCATGGGAATCACGAACATGAATCTTACTATGGA 899 Query 890 GATCGGGACACAGATAGCTTAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAG 949 |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| Sbjct 900 GATCGGGACACAGATAGCCTAGTCAAGATGGTAGAAGAACTGCTCAAACCTATAAAAAAG 959 Query 950 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTTTTAAAAAG 1009 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 GAGGATCATAAGTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCAACTATTAAAAAG 1019 Query 1010 GCACCAGTTAGTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGC 1069 ||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||| Sbjct 1020 GCACCGGTTAGTGGAGGTTGTAGAATTGAAGGATATGTCCGTGCAAAGAAGGTTCCCGGC 1079 Query 1070 GAACTTGTAATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1129 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GAACTTGTAATCTCGGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATG 1139 Query 1130 TCTCATATTGTTACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTGTGGACTGAT 1189 || ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1140 TCGCATATTGTTACCCATCTCTCATTTGGTACAATGGTTTCAGAAAGGTTATGGACTGAT 1199 Query 1190 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTC 1249 ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct 1200 ATGAAACGATTACTGCCTTATCTTGGCCAAAGCCATGACAGGCTGAATGGAAAATCTTTC 1259 Query 1250 ATCAATGAACGACAATTGGATGCTAATGTTACAATCGAACACTACTTGCAAATAATCAAA 1309 || ||| ||||| |||| || ||||||||||| || |||||||||||||||||| ||||| Sbjct 1260 ATAAATCAACGAAAATTTGAAGCTAATGTTACCATAGAACACTACTTGCAAATAGTCAAA 1319 Query 1310 ACAGAGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATAT 1369 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1320 ACAGAGGTCATTTCAAGAAGATCCGGTAAAGAACACTCATTGATTGAGGAATATGAATAT 1379 Query 1370 ACGGCTCATAGCAGCGTAGCTCGTAGTTACCATTATCCTGAAGCAAAGTTTCACTTTGAG 1429 |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1380 ACGGCTCATAGCAGCGTATCTCATAGTTACCATTATCCCGAAGCAAAGTTTCACTTTGAG 1439 Query 1430 CTCTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACA 1489 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1440 CTCTCTCCAATGCAGGTCTTAATAAGCGAGAATCCAAAGTCATTCTCGCACTTCATCACA 1499 Query 1490 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 AATGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTT 1559 Query 1550 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATA 1609 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 CAAAACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATCAGGAATG 1619 Query 1610 AGTGAGGTTAGATGTTAGTTTTTCCAATTTT-TTAAGATCTACAAAACCATAAAGAGACA 1668 |||||||||||||||||||||||| | |||| ||||||||||||| |||||| Sbjct 1620 AGTGAGGTTAGATGTTAGTTTTTC-AGTTTTATTAAGATCTACAATACCATA-------- 1670 Query 1669 CCTCAATTTCTTATATAACTTGTAGACCTTGTTTATTTTCGAATAGCCGTTTGAAAGAGA 1728 | ||| ||| ||| |||||||||| |||||||||||||||||| ||| |||||||| Sbjct 1671 --T---TTT-TTACATACCTTGTAGACCCTGTTTATTTTCGAATAGCAGTTCGAAAGAGA 1724 Query 1729 GAATAGAGTAACAATCTTCTTTGCAGCGTCTTGACTTCTTCTTGATTCTTTG 1780 ||||| || |||||| || |||||||| |||||||||| ||||||||||||| Sbjct 1725 GAATAAAGAAACAATTTTATTTGCAGCATCTTGACTTCCTCTTGATTCTTTG 1776 > Ahg479582 jgi|Araly1|479582|fgenesh2_kg.3__2283__AT3G20560.1 Length=1750 Score = 1212 bits (656), Expect = 0.0 Identities = 1224/1492 (82%), Gaps = 63/1492 (4%) Strand=Plus/Plus Query 141 CAGCCATGGTTTCAACCTCCAAGA-TCAAGTCCGTTGATTTCTACAGGAAAATCCCAAGA 199 |||||||||||||| || |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 135 CAGCCATGGTTTCATCCACCAA-ACTCAAGTCCGTTGATTTCTACAGGAAAATCCCGAGA 193 Query 200 GATTTGACTGAAGCATCTCTCTCTGGTGCTGGATTATCCATTGTAGCTGC-C-CTTGCTA 257 |||||||| || || ||||| || || ||||| ||||| ||||||||||| | ||| || Sbjct 194 GATTTGACGGAGGCGTCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTT--TA 251 Query 258 TGTTGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGCTA-TTAACACTAGCACATCT 316 || |||||||||||||||||||||||||||||||||||| | ||||||||| |||| || Sbjct 252 TGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGG-AAGTTAACACTACCACAGCT 310 Query 317 GTAATAGTTGACAAAAGCTCTGATGGGGACTTCTTAAACATTGATTTTAACATCAGCTTT 376 |||||||||||||| ||| |||||| ||||||||| ||||||||| |||||||| ||| Sbjct 311 GTAATAGTTGACAAGAGCAGTGATGGAGACTTCTTACGCATTGATTTCAACATCAGTTTT 370 Query 377 CCTGCCCTCTCATGTGAATTCGCATCAGTTGACGTGAGTGACGTGTTTGGAACTCACAGG 436 |||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| | ||| Sbjct 371 CCTGCCCTTTCATGTGAATTTGCATCTGTTGATGTGAGCGACGTGTTGGGAACAAATAGG 430 Query 437 TTAAATATATCGAAAACGATTAGAAAAG-TTCCAATTGATCCGCATTTAAGAG-CCA-CT 493 || |||||| | ||||| ||| | ||| |||||||||| ||||||||||| | ||| | Sbjct 431 TTGAATATAACAAAAACAATTCG-CAAGTTTCCAATTGACCCGCATTTAAG-GTCCACCG 488 Query 494 GCTG-AGGAATTTCACTC-CACCTCTG-ATTTACATCTCATCAACCATGGAGACGAAGAT 550 || | | ||||| ||||| ||| || | |||||| ||| ||||||||||| ||| | Sbjct 489 GC-GCA-GAATTCCACTCTGGCCT-TGCA-TTACATAACATTAACCATGGAGAAGAA-A- 542 Query 551 C-ATGGTGACAATAGTACTTATGCG-GATATACCCTTAACTGGTGCT-GCTTTTG-AGAA 606 | | || | | | | || ||| | | |||||| ||||| ||||| | ||||| || | Sbjct 543 CTAAGG-AAGAGT-TTCCTGATG-GTGCTATACCATTAACCAGTGCTAG-TTTTGAAGCA 598 Query 607 GTTTACACATCATTTTCAAATTTTGGTTGTTAATTTTTATGCGCCATGGTGCTACTGGAG 666 | | ||||||| |||| ||| |||||||| || || |||| ||||||||||||||||| Sbjct 599 CTAT-CACATCACTTTCCAATATTGGTTGTCAACTTCAATGCACCATGGTGCTACTGGAG 657 Query 667 TAATCGCCTGAAACCAT-CTTGGGTGAAAGCATCTCAA-ATAACGAGAGAAAGATATAAT 724 |||||| |||||||| | | |||| |||||| || || |||| | | |||||||| || Sbjct 658 TAATCGTCTGAAACC-TGCATGGGAAAAAGCAGCT-AATATAATAAAACAAAGATATGAT 715 Query 725 CCTGGAA-CTGATGATCGTGTTCTTTTAGGAAGTGTTGATTGCACAGAAGAACCTACCCT 783 ||| ||| |||||| |||||||||| |||||| ||||||||||| ||||||||| | || Sbjct 716 CCT-GAAGCTGATGGTCGTGTTCTTCTAGGAAACGTTGATTGCACGGAAGAACCTGCGCT 774 Query 784 ATGTAAGAGCAATCATATACAAGGCTATCCATCTATTCGGATTTTCCGCAGAGGCAGTGG 843 ||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| Sbjct 775 ATGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGA 834 Query 844 TCTTAGGGAGGACCATGGGA-ACCACGAACATGAATCTTACTATGGAGATCGGGACACAG 902 ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| | Sbjct 835 CCTTAGAGAGGACCAT-GGACACCACGAACATGAATCTTACTATGGAGATCGGGACACGG 893 Query 903 ATAGCT-TAGTCAAGATGGTGGAAGAACTGCTCAAACCTATTAAAAAGGAGGA-TCATAA 960 |||| | |||| ||||||||||| | |||| || |||||| | |||| | ||| || Sbjct 894 ATAG-TATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAG-ACTCACAA 951 Query 961 GTTGGCTTTGGATGGTAAATCTGATAATGCGGCTTCA-ACTTTTAAAAAGGCACCAGTTA 1019 | | ||||||||||||||||| || || | | | | | | |||||||||||||||||| Sbjct 952 GGTAGCTTTGGATGGTAAATCCAATGATACCG-TAAAGAATCTTAAAAAGGCACCAGTTA 1010 Query 1020 GTGGAGGTTGTCGAATTGAAGGATATGTTCGCGCAAAGAAGGTTCCCGGCGAACTT-GTA 1078 ||||||||| || ||||||| ||||| || | |||||||||||| || ||| | || Sbjct 1011 CAGGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGA-AACCTCGTT 1069 Query 1079 ATCTCAGCTCATTCAGGAGCTCATTCATTTGATGCTTCTCAAATGAACATGTCTCATATT 1138 ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| || Sbjct 1070 ATCTCAGCTCATTCAGGAGCTCATTCATTCGATTCTTCTCAAATGAACATGTCGCATGTT 1129 Query 1139 GT-TACCCATCTAACATTTGGTACAATGGTTTCAGAAAGGTTG-TGGACTGATATGAAAC 1196 || | ||||||| | ||||| | ||| |||| |||||| || || |||||||||| Sbjct 1130 GTGT-CCCATCTTTCGTTTGGGAGGATGATTTCTCCTAGGTTGCTG-ACCGATATGAAAC 1187 Query 1197 GATTACTGCCTTATCTTGGCCAAAGCTATGATAGGCTGAATGGAAAATCGTTCATCAATG 1256 | || |||| |||||||||| |||| |||| |||||| ||||||| | ||||| ||| Sbjct 1188 GGTTGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATC 1247 Query 1257 AACGACAA-TT-GGATGCTAATGTTACAATCGAACACTAC-TTGCAAATAATCAAAACAG 1313 ||| | | || || ||| ||||| || |||||||||||| || |||||| ||||||||| Sbjct 1248 AAC-ATGAGTTTGG-TGCCAATGTCACTATCGAACACTACCTT-CAAATAGTCAAAACAG 1304 Query 1314 AGGTCATTTCAAGAAGATCCGGCCAAGAACACTCATTGATTGAGGAATATGAATATACGG 1373 |||||||| ||||||||||||| |||||||| ||| |||| |||||||||||||| || | Sbjct 1305 AGGTCATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCG 1364 Query 1374 CTCATAGCAGCGTAGCTC-GTAGTTACCA-TTATCCTGAAGCAAAGTTTCACTTTGAGCT 1431 |||| |||||||| |||| | | |||| | ||| || | || ||||||||||||||||| Sbjct 1365 CTCACAGCAGCGTGGCTCAG-ACTTACTACTTACCC-GTTGCGAAGTTTCACTTTGAGCT 1422 Query 1432 CTCTCCAATGCAGGTCCTAATAAGCGAGAACCCAAAGTCATTCTCGCACTTCATCACAAA 1491 |||||| |||||| || |||||| ||| ||||||||||| ||||| |||||||||||||| Sbjct 1423 CTCTCCCATGCAGATCTTAATAACCGAAAACCCAAAGTCCTTCTCACACTTCATCACAAA 1482 Query 1492 TGTTTGCGCCATAATAGGAGGTGTTTTTACGGTCGCGGGAATACTAGATTCTATATTTCA 1551 | | || ||||| || || |||||||| ||||| || |||||||| ||||| || |||| Sbjct 1483 TCTGTGTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTTGATTCGAT-TTTCC 1541 Query 1552 A-AACACAGTTAGAATGGTGAAAAAGATCGAACTCGGGAAAAACATTTGATC 1602 | || ||||| ||| || | |||||| ||||||| ||||||||||||||||| Sbjct 1542 ACAATACAGTAAGACTGATAAAAAAGGTCGAACTTGGGAAAAACATTTGATC 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66886470220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5